Sed0022622 (gene) Chayote v1

Overview


Name	Sed0022622
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	LG07: 21938777 .. 21940710 (-)
RNA-Seq Expression	Sed0022622
Synteny	Sed0022622

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACAAAAAGGAAAGTTTGTGGCTGCCAAAAGAGTAGAGGTCGAGAGCTCCAATACTAAAAAGAATGAAGTTTCAAAGGAGGTAAGGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGATTTGGGCACATGAGCAAGGAATGTGTTAATAAAAGAGTTATGGTGATAAGAAATGGTGTAATTGATTCGGATGATGATTGTGAGGAGCATGATGAAGAACTTGAGGCAGAATATGGAGCACATGATGATGAGTACATTGAAGAAGGTAACTTAATTTCTTTTATCACAAGAAGGGTACTTAATGTGCAAATTAAAGAAGAAAAAGTTGAAGATCAAAGGGAAAACTTGTTTCATACAAGATGCTTGGTTAAAGGAAACCCATGTAGTGTGGTAATTGATAGTGGAAGTTGTACAAATGTGGTGAGTAGCTTTCTTGTTAAAAGACTCCAACTAACTACTCGTCCACATTCGAAACCATACAAGCTTCAATGGTTGACCAACAAAGGAGAGCTTAAGGTAAACTCTCAAGCTCTTATTCCTTTTACTTTGGGAAGATATAAAGATGAAGTTCTTTGTGATGTTGTACCTATGCATGCGGGGGATATTTTGTTAGGCCGACCTTGGCAATATGATAGAGAGGTCACTTTTGATGGATTGAGAAATAAGTATATTTTTACTTTGAGTGGAAATTTTTTTACTTTACTTCCATTGTCACCATATGAAGTACATTGTGATCAATTGAAATTAGAAAAGAAAAGAAAAGAATTTGAAGAACAAGAGAGGAGAGAAGAAAGTAAGGTAAGAGAGAAGAGTGAAAAAAGAGAGAAAAGTGAGGGACAAAAGGTGAGTGAAAATAAAGAGAGAAAAAAGAGTGATTTTGATGAAAAAAGAAAGAATGTGAGTTTGGTTATACAAAAAAGGGAAGTGAGGAAAGTTTTAGCTCAAGAACCAAAATTCGTACTTATGTGCCTGGATGTGTTTGATAAATGAGCCCAAATCTGAAAATGTTTTGCCAAGTATTTTTAAGTCTCTTTTGCAGGAATTTAATGACATGTTTCCACATGAAGATGCACCTATGGGATTACCCCCTCTAAGAGGAATTGAGCACCAAATTGACTTCATTTCCGGAGCAACTCTTCCAAACATGGCTGCCTATAGGACATATCCAACCGAAACCAAGGAGATTCAAAGGCAAGTGGAGGAACTCATGGATAAAGGCTATGTTAGGGAAAGCATGAGTCCTTGTTCGGTTCCAGTTATTTTAGTACCAAAGAAAGATGGCACTTGGAGGATGTGTGTTGATTGTCGAGCTATCAACAAGATAACGGTAAAGTATCGACATCCCATTCCTAGATTAGATGATATGCTAGATGAATTACATGGTGCAAACTTGTTTTCAAAAATAGATCTTAAGAGTGGTTATCATCAAATTAGAATGCATGTAGGAGATGAGTGGAAAACTGCTTTTAAAACAAAGTTTGGGCTTTATCAGTGGCTTGTTATGCCATTGGGCCTTACTAATGCACCAAGTACTTTTATGCGATTAATGAATCATGTTTTGAGAGAATACATTGGAAAATTTGTTGTCGTATACTTTGATAACATCCTTGTTTACTCAAAAAGCTTGAATGATCATGTTTTGCATGTTAAGACAATTTTACTTAAACTTAGAGAAGAGAAACTTTATGCGAACTTCAAAAAGTGTAGTTTTTGTCTAGACCAAGTTAATTTCCTAGGATTCATTGTTGGAAAGAATGGAGTGCAAGTTGATGAAGAAAAGGTTAAGGCTATTCGAGAATGGCCAACACCCACGAATGCAACCGAGGTAAGATCTTTTCATGGTTTGGCTAGTTTCTATAGGAGGTTTATTAAGGATTTCAGTAGCATAGCCTCACCATTGAATGAACTTGTTAGGAAGAATGTGA

mRNA sequence

ATGCAACAAAAAGGAAAGTTTGTGGCTGCCAAAAGAGTAGAGGTCGAGAGCTCCAATACTAAAAAGAATGAAGTTTCAAAGGAGGTAAGGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGATTTGGGCACATGAGCAAGGAATGTGTTAATAAAAGAGTTATGGTGATAAGAAATGGTGTAATTGATTCGGATGATGATTGTGAGGAGCATGATGAAGAACTTGAGGCAGAATATGGAGCACATGATGATGAGTACATTGAAGAAGGAAGAATGTGA

Coding sequence (CDS)

ATGCAACAAAAAGGAAAGTTTGTGGCTGCCAAAAGAGTAGAGGTCGAGAGCTCCAATACTAAAAAGAATGAAGTTTCAAAGGAGGTAAGGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGATTTGGGCACATGAGCAAGGAATGTGTTAATAAAAGAGTTATGGTGATAAGAAATGGTGTAATTGATTCGGATGATGATTGTGAGGAGCATGATGAAGAACTTGAGGCAGAATATGGAGCACATGATGATGAGTACATTGAAGAAGGAAGAATGTGA

Protein sequence

MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAHDDEYIEEGRM

Homology

[Close]

BLAST of Sed0022622 vs. NCBI nr
Match: XP_022158838.1 (uncharacterized protein LOC111025303 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-30
Identity = 74/92 (80.43%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1   MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIR 60
           MQ KGKFVAAKR+E ESSNTKKNE  KEVRE +SSIQCWKCKGFGHMSK+CVNKRVMVIR
Sbjct: 262 MQPKGKFVAAKRMEGESSNTKKNEAPKEVRENTSSIQCWKCKGFGHMSKDCVNKRVMVIR 321

Query: 61  NGVIDSDDDCEEHDEELEAEYGAHDDEYIEEG 93
           NGV+DSDDDCEEHDE  E      D+EYIEEG
Sbjct: 322 NGVVDSDDDCEEHDEXFE----ERDEEYIEEG 349

[Close]

BLAST of Sed0022622 vs. NCBI nr
Match: TYK22420.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 4.1e-30
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIR 60
           MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+R
Sbjct: 298 MQSRGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVR 357

Query: 61  NGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG 93
           NGVIDS+D+CEE+D +LE EY    DDEYIEEG
Sbjct: 358 NGVIDSEDECEENDAQLEEEYETPVDDEYIEEG 390

[Close]

BLAST of Sed0022622 vs. NCBI nr
Match: XP_022153198.1 (uncharacterized protein LOC111020753 [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 4.1e-30
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1   MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIR 60
           +Q K KFVAAKR+E ESSNTK+NE  KEVREK+SSIQCWKCKGFGHMSK+CVNKRVMVIR
Sbjct: 296 LQPKEKFVAAKRMEGESSNTKRNEAPKEVREKTSSIQCWKCKGFGHMSKDCVNKRVMVIR 355

Query: 61  NGVIDSDDDCEEHDEELEAEYGAHDDEYIEEG 93
           NGV+DSDDDCEEHDEE E      D+EYIEEG
Sbjct: 356 NGVVDSDDDCEEHDEEFE----ERDEEYIEEG 383

[Close]

BLAST of Sed0022622 vs. NCBI nr
Match: TYK26105.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 4.1e-30
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIR 60
           MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+R
Sbjct: 298 MQSRGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVR 357

Query: 61  NGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG 93
           NGVIDS+D+CEE+D +LE EY    DDEYIEEG
Sbjct: 358 NGVIDSEDECEENDAQLEEEYETPVDDEYIEEG 390

[Close]

BLAST of Sed0022622 vs. NCBI nr
Match: TYK02449.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 4.1e-30
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIR 60
           MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+R
Sbjct: 298 MQSRGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVR 357

Query: 61  NGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG 93
           NGVIDS+D+CEE+D +LE EY    DDEYIEEG
Sbjct: 358 NGVIDSEDECEENDAQLEEEYETPVDDEYIEEG 390

[Close]

BLAST of Sed0022622 vs. ExPASy TrEMBL
Match: A0A6J1DX75 (uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025303 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.9e-31
Identity = 74/92 (80.43%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1   MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIR 60
           MQ KGKFVAAKR+E ESSNTKKNE  KEVRE +SSIQCWKCKGFGHMSK+CVNKRVMVIR
Sbjct: 262 MQPKGKFVAAKRMEGESSNTKKNEAPKEVRENTSSIQCWKCKGFGHMSKDCVNKRVMVIR 321

Query: 61  NGVIDSDDDCEEHDEELEAEYGAHDDEYIEEG 93
           NGV+DSDDDCEEHDE  E      D+EYIEEG
Sbjct: 322 NGVVDSDDDCEEHDEXFE----ERDEEYIEEG 349

[Close]

BLAST of Sed0022622 vs. ExPASy TrEMBL
Match: A0A5A7UEI2 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003620 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIR 60
          MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+R
Sbjct: 1  MQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVR 60

Query: 61 NGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG 93
          NGVIDS+D+CEE+D +LE EY    DDEYIEEG
Sbjct: 61 NGVIDSEDECEENDAQLEEEYETPVDDEYIEEG 93

[Close]

BLAST of Sed0022622 vs. ExPASy TrEMBL
Match: A0A5D3C8C6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002620 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIR 60
           MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+R
Sbjct: 274 MQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVR 333

Query: 61  NGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG 93
           NGVIDS+D+CEE+D +LE EY    DDEYIEEG
Sbjct: 334 NGVIDSEDECEENDAQLEEEYETPVDDEYIEEG 366

[Close]

BLAST of Sed0022622 vs. ExPASy TrEMBL
Match: A0A5D3DRJ1 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIR 60
           MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+R
Sbjct: 298 MQSRGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVR 357

Query: 61  NGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG 93
           NGVIDS+D+CEE+D +LE EY    DDEYIEEG
Sbjct: 358 NGVIDSEDECEENDAQLEEEYETPVDDEYIEEG 390

[Close]

BLAST of Sed0022622 vs. ExPASy TrEMBL
Match: A0A5D3C3D3 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1   MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIR 60
           MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+R
Sbjct: 298 MQSRGKFVAAQKVETESSNTKKFEASKEVREKTSSIQCWKCKGFGHMSKDCINKRVMVVR 357

Query: 61  NGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG 93
           NGVIDS+D+CEE+D +LE EY    DDEYIEEG
Sbjct: 358 NGVIDSEDECEENDAQLEEEYETPVDDEYIEEG 390

The following BLAST results are available for this feature:

BLAST of Sed0022622 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158838.1	1.8e-30	80.43	uncharacterized protein LOC111025303 [Momordica charantia]	[more]
TYK22420.1	4.1e-30	77.42	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
XP_022153198.1	4.1e-30	79.35	uncharacterized protein LOC111020753 [Momordica charantia]	[more]
TYK26105.1	4.1e-30	77.42	F15O4.13 [Cucumis melo var. makuwa]	[more]
TYK02449.1	4.1e-30	77.42	F15O4.13 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0022622 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0022622 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX75	8.9e-31	80.43	uncharacterized protein LOC111025303 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5A7UEI2	2.0e-30	77.42	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3C8C6	2.0e-30	77.42	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3DRJ1	2.0e-30	77.42	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 ...	[more]
A0A5D3C3D3	2.0e-30	77.42	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4...	[more]

BLAST of Sed0022622 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 37..53 e-value: 0.0061 score: 24.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 37..51 e-value: 2.4E-4 score: 21.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 38..51 score: 8.845061
None	No IPR available	GENE3D	4.10.60.10		coord: 13..58 e-value: 2.2E-6 score: 29.4
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 24..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022622.1	Sed0022622.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding