Sed0022618 (gene) Chayote v1

Overview
NameSed0022618
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG10: 6666297 .. 6667539 (-)
RNA-Seq ExpressionSed0022618
SyntenySed0022618
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGGAAGCCGTTGGTGAAGAAGTAAAAAGGGGAAAATAAAAGGACCAAAGGGAAAATTGAGGAGAACCCACAGCTGTCCATCGAAGATGATTGGGCAGGTTAAAACGCGGTACTTTTAGCGAGCTTACGACGCTGCCCGATCTGCCCGATACCGGTCTGGGAAATTACGGGCAGTCGGTCTGGTTTCTCTCACTTCCCCCTCACCCTACTCCCCCTTCCCTCCCATCCTTCTCTGTGAGCCGCCGATTATTCTACACCCACCTTTCTCTCGATCTCGATCGGACGGTCCAGAATGAACGCTGCTTCTCGCCCTTCTTTTCTTCAGTTTTAGATCCCGATTCCTCCAGATCTACCATCTCCCTGCTCTGATTTCTCTTCTCGGTATGTTTTTTTTTCTCTAAATCCTTTGTTGTTTTCTCCATGAATCTGTTCCTGCTTGATTTCTTCCATTTCAGCTCTCTCTTATCCTGTTTTCCGCGTTTTGCTTCAATTTCCTTGCCTTTTCTTCACTCCGCTAGTGTTCTAAGGTCGTTTCTCGATGATTTAGCTGTTTTTTTCTGCGTTTTATGGCTGTTCGATTCCTTGTATACCTGTGGTTTTAGTCGTTTTTGTGATGGATTCACCGTTGACTTCATGGAACACTGAAATTAAAACTTCCGCTGCTGCTTTTTTTACTCTTGTTTTTAGAAGAAGAAATATTGTGTAGATGGAGCCTCTTTTTTGTATTTTATAGTCCGAGGTCAAACCTCGAGGATAGGCGGTTGAAAATTGCCAAATCAATTACGGCTGAGTGACTGACAGAATTTCCGGTGGAGTGGGTGTTTTGTTATGTAAAATTAGTTTGTTTTTTTTTTAACGGATGTTTGAATTTTTGGGACAGATCTGACGGCGGCCGTGCGAATGGAGATGTCAAATGGTTCGGCAGGTGTGATGCTTGGTGATGGCTCGCTCGTTTGCGCCACTCATGGTTTAGCTTCGGCTCTGGCTCTGGCTCTGCTCAACACCCAGCTCATGGCTCAGGCATGTCACTCTCTAACTTTCTTGTTCTTTGTTTTTATTACCAAGTTTAATCTGCCTAGTTAATCAGAATTTCTGGTTGGTCGCTTCATTTGCTACAACTATGTTTTGGCTGTGTGCTTTTTCTTAGAGGGGGAAATTATATTTTTACCTGTTTTTACTGGATTTTTTTGGTTTGTTTTCTTTAATTATTGCTCCCAATTTCGTTCGGCTGAGGTAA

mRNA sequence

ATGGGAAAGGAAGCCGTTGGTGAAGAAATCCCGATTCCTCCAGATCTACCATCTCCCTGCTCTGATTTCTCTTCTCGCTCTCTCTTATCCTGTTTTCCGCGTTTTGCTTCAATTTCCTTGCCTTTTCTTCACTCCGCTAGTGTTCTAAGGTCGTTTCTCGATGATTTAGCTGTTTTTTTCTGCGTTTTATGGCTGTTCGATTCCTTGTATACCTGTGGTTTTAGTCGTTTTTATCTGACGGCGGCCGTGCGAATGGAGATGTCAAATGGTTCGGCAGGTGTGATGCTTGGTGATGGCTCGCTCGTTTGCGCCACTCATGGTTTAGCTTCGGCTCTGGCTCTGGCTCTGCTCAACACCCAGCTCATGGCTCAGGCATGTCACTCTCTAACTTTCTTGTTCTTTAGGGGGAAATTATATTTTTACCTGTTTTTACTGGATTTTTTTGGTTTGTTTTCTTTAATTATTGCTCCCAATTTCGTTCGGCTGAGGTAA

Coding sequence (CDS)

ATGGGAAAGGAAGCCGTTGGTGAAGAAATCCCGATTCCTCCAGATCTACCATCTCCCTGCTCTGATTTCTCTTCTCGCTCTCTCTTATCCTGTTTTCCGCGTTTTGCTTCAATTTCCTTGCCTTTTCTTCACTCCGCTAGTGTTCTAAGGTCGTTTCTCGATGATTTAGCTGTTTTTTTCTGCGTTTTATGGCTGTTCGATTCCTTGTATACCTGTGGTTTTAGTCGTTTTTATCTGACGGCGGCCGTGCGAATGGAGATGTCAAATGGTTCGGCAGGTGTGATGCTTGGTGATGGCTCGCTCGTTTGCGCCACTCATGGTTTAGCTTCGGCTCTGGCTCTGGCTCTGCTCAACACCCAGCTCATGGCTCAGGCATGTCACTCTCTAACTTTCTTGTTCTTTAGGGGGAAATTATATTTTTACCTGTTTTTACTGGATTTTTTTGGTTTGTTTTCTTTAATTATTGCTCCCAATTTCGTTCGGCTGAGGTAA

Protein sequence

MGKEAVGEEIPIPPDLPSPCSDFSSRSLLSCFPRFASISLPFLHSASVLRSFLDDLAVFFCVLWLFDSLYTCGFSRFYLTAAVRMEMSNGSAGVMLGDGSLVCATHGLASALALALLNTQLMAQACHSLTFLFFRGKLYFYLFLLDFFGLFSLIIAPNFVRLR
Homology
[Close]
BLAST of Sed0022618 vs. NCBI nr
Match: KAG6594852.1 (hypothetical protein SDJN03_11405, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 7.7e-08
Identity = 47/123 (38.21%), Postives = 54/123 (43.90%), Query Frame = 0 

Query: 2   GKEAVGEEIPIPPDLPSPCSDFSSRSLLSCFPRFASISLPFLHSASVLRSFLDDLAVFFC 61
           G E  G+ IPI PDLPSPCSD SSR                                   
Sbjct: 72  GLENYGQSIPIRPDLPSPCSDLSSRE---------------------------------- 131

Query: 62  VLWLFDSLYTCGFSRFYLTAAVRMEMSNGSAGVMLGDGSLVCATHGLASALALALLNTQL 121
                               A RME++N SAGV  G GSL CA+HGLA+ LA AL+NTQL
Sbjct: 132 ------------------QVAARMEITNASAGVTFGAGSLACASHGLAALLASALVNTQL 142

Query: 122 MAQ 125
           +AQ
Sbjct: 192 LAQ 142

[Close]
BLAST of Sed0022618 vs. NCBI nr
Match: XP_038881735.1 (nucleolin [Benincasa hispida] >XP_038881737.1 nucleolin [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-04
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 85  MEMSNGSAGVMLGDGSLVCATHGLASALALALLNTQLMAQ 125
           ME++NGS GV LGDGSL CA+HGLA+ LA AL+NTQ +AQ
Sbjct: 1   MEIANGSVGVTLGDGSLACASHGLAALLASALVNTQRLAQ 40

The following BLAST results are available for this feature:
BLAST of Sed0022618 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6594852.17.7e-0838.21hypothetical protein SDJN03_11405, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038881735.13.0e-0470.00nucleolin [Benincasa hispida] >XP_038881737.1 nucleolin [Benincasa hispida][more]
BLAST of Sed0022618 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0022618 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0022618 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022618.1Sed0022618.1mRNA