Sed0022517 (gene) Chayote v1

Overview


Name	Sed0022517
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Auxin-responsive family protein
Location	LG05: 36468256 .. 36468720 (+)
RNA-Seq Expression	Sed0022517
Synteny	Sed0022517

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGATAATTTCCCTATTGAGGAAATGCAAGAGCCTCTCAAGGCAATTGGGAAGATCCTCTTCTTATAGAAGCTTGAGGTCCAAATCCACAAAAGAAGATCTTTGGATTTGTGAAAGAAAAATGGAAGAACAAGAAGAAGATTTTGGTGATCATCATCAGCAGCTTGAAAAGGTCAGTGGCAATAATGTAATTATATATGTTGGAAGCACAAGGAAGAGATATGCAATATGTTCAAAGTACTTGAGCCATCCTTTGTTAAATGCTCTGATTGACAAATCAAAGCCAAAGGCTGATGAAGATTGTGATAATAATAATAATGTAATTTTTGTGAGATGTGAAGTTGTTCTCTTTGATCATCTCTTATGGATGTTGGAAAATTCTGATCCAAATATCAGTTTTTATTCAAATTTTGAAGAATTGGCTGAGCTTTATGTGTGTTATAATCTATTATATATATAA

mRNA sequence

ATGAAGAAGATAATTTCCCTATTGAGGAAATGCAAGAGCCTCTCAAGGCAATTGGGAAGATCCTCTTCTTATAGAAGCTTGAGGTCCAAATCCACAAAAGAAGATCTTTGGATTTGTGAAAGAAAAATGGAAGAACAAGAAGAAGATTTTGGTGATCATCATCAGCAGCTTGAAAAGGTCAGTGGCAATAATGTAATTATATATGTTGGAATTGTTCTCTTTGATCATCTCTTATGGATGTTGGAAAATTCTGATCCAAATATCAGTTTTTATTCAAATTTTGAAGAATTGGCTGAGCTTTATGTGTGTTATAATCTATTATATATATAA

Coding sequence (CDS)

ATGAAGAAGATAATTTCCCTATTGAGGAAATGCAAGAGCCTCTCAAGGCAATTGGGAAGATCCTCTTCTTATAGAAGCTTGAGGTCCAAATCCACAAAAGAAGATCTTTGGATTTGTGAAAGAAAAATGGAAGAACAAGAAGAAGATTTTGGTGATCATCATCAGCAGCTTGAAAAGGTCAGTGGCAATAATGTAATTATATATGTTGGAATTGTTCTCTTTGATCATCTCTTATGGATGTTGGAAAATTCTGATCCAAATATCAGTTTTTATTCAAATTTTGAAGAATTGGCTGAGCTTTATGTGTGTTATAATCTATTATATATATAA

Protein sequence

MKKIISLLRKCKSLSRQLGRSSSYRSLRSKSTKEDLWICERKMEEQEEDFGDHHQQLEKVSGNNVIIYVGIVLFDHLLWMLENSDPNISFYSNFEELAELYVCYNLLYI

Homology

[Close]

BLAST of Sed0022517 vs. NCBI nr
Match: XP_038899559.1 (auxin-responsive protein SAUR78 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 84/149 (56.38%), Postives = 89/149 (59.73%), Query Frame = 0


Query: 1   MKKIISLLRKCKSLSRQLGRSSSYRSLRSKSTKEDLWICERKMEEQEEDFGDHHQQLEKV 60
           MKKI  LLRKCKSLSRQLGRSSSY SLRSKST+EDLW+C  KME  EEDF    QQLEKV
Sbjct: 1   MKKINYLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCGTKME--EEDFEQQKQQLEKV 60

Query: 61  SGNNVIIYVG-----------------------------------------------IVL 103
           SGN+VI+YVG                                               +VL
Sbjct: 61  SGNDVILYVGSTRKRYAISSKYLSHPLLNALIDKSKSKKLLANDDDEEEDCISVRCEVVL 120

[Close]

BLAST of Sed0022517 vs. NCBI nr
Match: XP_022135446.1 (uncharacterized protein LOC111007398 [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 9.9e-28
Identity = 84/148 (56.76%), Postives = 92/148 (62.16%), Query Frame = 0


Query: 1   MKKIISLLRKCKSLSRQLGRSSSYRSLRSKSTKEDLW-ICERKMEEQEEDFGDH-HQQLE 60
           MKKI SLLRKCKSLSRQLGRSSSY SLRSKST+EDLW IC  KMEE+EE+  DH  QQLE
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEEDHQQQQLE 60

Query: 61  KVSGNNVIIYVG--------------------------------------------IVLF 103
           KV G+NVI+YVG                                            +VLF
Sbjct: 61  KVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLF 120

[Close]

BLAST of Sed0022517 vs. NCBI nr
Match: XP_023536060.1 (auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 80/151 (52.98%), Postives = 89/151 (58.94%), Query Frame = 0


Query: 1   MKKIISLLRKCKSLSRQLGRSSSYRSLRSKSTKEDLWICERKMEEQEE----DFGDHHQQ 60
           M K+ SLLRKCKSLSRQLGRSSSY SLRSKST+EDLW+C+R MEE EE    +  + H+ 
Sbjct: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCDRTMEEHEEREEHEEREEHEG 60

Query: 61  LEKVSGNNVIIYVG---------------------------------------------I 103
            EKVSG+NVIIYVG                                             +
Sbjct: 61  FEKVSGSNVIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDECISVRCEV 120

[Close]

BLAST of Sed0022517 vs. NCBI nr
Match: KAG7024703.1 (hypothetical protein SDJN02_13521, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.0 bits (323), Expect = 2.4e-26
Identity = 81/155 (52.26%), Postives = 91/155 (58.71%), Query Frame = 0


Query: 1   MKKIISLLRKCKSLSRQLGRSSSYRSLRSKSTKEDLWICERKMEEQE-----EDFGDHHQ 60
           M K+ SLLRKCKSLSRQLGRSSSY SLRSKST+EDLW+CER MEE E     E+ G+H +
Sbjct: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEE 60

Query: 61  Q--LEKVSGNNVIIYVG------------------------------------------- 103
           +   E+VSG+NVIIYVG                                           
Sbjct: 61  REGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISV 120

[Close]

BLAST of Sed0022517 vs. NCBI nr
Match: XP_011653970.1 (auxin-responsive protein SAUR78 [Cucumis sativus] >KAE8649782.1 hypothetical protein Csa_012026 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 4.6e-25
Identity = 82/156 (52.56%), Postives = 90/156 (57.69%), Query Frame = 0


Query: 1   MKKIISLLRKCKSLSRQLGRSSSYRSLRSKSTKEDLWICERKMEEQEEDFGDHHQQLE-K 60
           MKKI SLLRKCKSLSRQLGRSSSY SLRSKST+EDLW+CE+    QEEDF    QQ+E K
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEK----QEEDF---EQQIEQK 60

Query: 61  VSGNNVIIYVG------------------------------------------------- 103
           VSG+NVI+YVG                                                 
Sbjct: 61  VSGSNVILYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDDGHEDDEECIL 120

[Close]

BLAST of Sed0022517 vs. ExPASy TrEMBL
Match: A0A0A0L464 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G607030 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.5e-33
Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MKKIISLLRKCKSLSRQLGRSSSYRSLRSKSTKEDLWICERKMEEQEEDFGDHHQQLE-K 60
           MKKI SLLRKCKSLSRQLGRSSSY SLRSKST+EDLW+CE+    QEEDF    QQ+E K
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEK----QEEDF---EQQIEQK 60

Query: 61  VSGNNVIIYVGIVLFDHLLWMLENSDPNISFYSNFEELAELYV 103
           VSG+NVI+YVGIVLFDHLLWMLENSDPNI+F SN EELAELYV
Sbjct: 61  VSGSNVILYVGIVLFDHLLWMLENSDPNITFDSNLEELAELYV 96

[Close]

BLAST of Sed0022517 vs. ExPASy TrEMBL
Match: A0A6J1C0S4 (uncharacterized protein LOC111007398 OS=Momordica charantia OX=3673 GN=LOC111007398 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.8e-28
Identity = 84/148 (56.76%), Postives = 92/148 (62.16%), Query Frame = 0


Query: 1   MKKIISLLRKCKSLSRQLGRSSSYRSLRSKSTKEDLW-ICERKMEEQEEDFGDH-HQQLE 60
           MKKI SLLRKCKSLSRQLGRSSSY SLRSKST+EDLW IC  KMEE+EE+  DH  QQLE
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEEDHQQQQLE 60

Query: 61  KVSGNNVIIYVG--------------------------------------------IVLF 103
           KV G+NVI+YVG                                            +VLF
Sbjct: 61  KVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLF 120

[Close]

BLAST of Sed0022517 vs. ExPASy TrEMBL
Match: A0A1S3B9J9 (uncharacterized protein LOC103487659 OS=Cucumis melo OX=3656 GN=LOC103487659 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.5e-24
Identity = 80/158 (50.63%), Postives = 87/158 (55.06%), Query Frame = 0


Query: 1   MKKIISLLRKCKSLSRQLGRSSSYRSLRSKSTKEDLWICERKMEEQEEDFGDHHQQLEKV 60
           MKKI SLLRKCKSLSRQLGRSSSY SLRSKST+EDLW+CE+    QEEDF     Q  KV
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEK----QEEDFEQQFDQ--KV 60

Query: 61  SG-NNVIIYVG------------------------------------------------- 103
           SG NNV++YVG                                                 
Sbjct: 61  SGNNNVVLYVGSTRKKYAINSKYLGHPLLNALIDKSKSKKLVDDHDDEHEEHDDGDDEDC 120

[Close]

BLAST of Sed0022517 vs. ExPASy TrEMBL
Match: B9RI47 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1576420 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 60/125 (48.00%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 1   MKKIISLLRKCKSLSRQLGRSSSYRSLRSKSTKEDLWICERKMEEQEED----------- 60
           MKKI  +LRKCKSLSRQLGRSSSY SLRSKST+E+LW   ++ +E+ +            
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREELWGDHKEEDEEHQSTLFVGSTRKRY 60

Query: 61  -----FGDHH------QQLEKVSGNNV-IIYVGIVLFDHLLWMLENSDPNISFYSNFEEL 103
                +  H       Q+ ++  G  + ++   +VLFDHLLWMLEN+DPN+SF  + EEL
Sbjct: 61  VISSKYLSHPLVNALIQKSKQRQGEEILVVKCEVVLFDHLLWMLENADPNLSF-DSLEEL 120

[Close]

BLAST of Sed0022517 vs. ExPASy TrEMBL
Match: C6T0R1 (Uncharacterized protein OS=Glycine max OX=3847 GN=100500162 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-16
Identity = 65/130 (50.00%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 1   MKKIISLLRKCKSLSRQLGRSSSYRSLRSKSTKEDLWICERKMEEQE------------- 60
           MKKI  LLRKCKSLSRQLGRSSSY SLRSKSTKED+W     M+E E             
Sbjct: 1   MKKINLLLRKCKSLSRQLGRSSSYSSLRSKSTKEDIWGGRHGMQEDENCETIFVGSTRKR 60

Query: 61  ----EDFGDH---------HQQLEKVSGNNVIIYVG--IVLFDHLLWMLENSDPNISFYS 103
               + + +H          +Q++K S  + ++ V   +VLFDHLLWMLEN+DP  S  S
Sbjct: 61  YIISKKYLNHPLLNALINKSKQIKKDSDESSVLVVNCEVVLFDHLLWMLENADPKFSSES 120

[Close]

BLAST of Sed0022517 vs. TAIR 10
Match: AT3G12955.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 48.1 bits (113), Expect = 5.1e-06
Identity = 40/133 (30.08%), Postives = 61/133 (45.86%), Query Frame = 0


Query: 3   KIISLLRKCKSLSRQLGRSSSYRSLRSKS----------------------------TKE 62
           +++ +LR+CKS+S QLGRS SY SLRSKS                            TK+
Sbjct: 6   RLMMMLRRCKSVSTQLGRSYSYTSLRSKSARRDPQDHLQDVDQSPTPSMYQTVLVGRTKK 65

Query: 63  DLWICERKMEEQEEDFGDHHQQLEKVSGNN-----VIIYVGIVLFDHLLWMLENSDPNIS 103
              I ++ ++    +     QQ  +   N      + +   +VLFDHLLWMLE  D  + 
Sbjct: 66  PYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVVLFDHLLWMLEYGD-EVH 125

The following BLAST results are available for this feature:

BLAST of Sed0022517 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899559.1	2.0e-28	56.38	auxin-responsive protein SAUR78 [Benincasa hispida]	[more]
XP_022135446.1	9.9e-28	56.76	uncharacterized protein LOC111007398 [Momordica charantia]	[more]
XP_023536060.1	1.1e-26	52.98	auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo]	[more]
KAG7024703.1	2.4e-26	52.26	hypothetical protein SDJN02_13521, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_011653970.1	4.6e-25	52.56	auxin-responsive protein SAUR78 [Cucumis sativus] >KAE8649782.1 hypothetical pro...	[more]

BLAST of Sed0022517 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0022517 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L464	6.5e-33	80.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G607030 PE=4 SV=1	[more]
A0A6J1C0S4	4.8e-28	56.76	uncharacterized protein LOC111007398 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A1S3B9J9	5.5e-24	50.63	uncharacterized protein LOC103487659 OS=Cucumis melo OX=3656 GN=LOC103487659 PE=...	[more]
B9RI47	2.5e-16	48.00	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1576420 PE=3 SV=1	[more]
C6T0R1	3.2e-16	50.00	Uncharacterized protein OS=Glycine max OX=3847 GN=100500162 PE=2 SV=1	[more]

BLAST of Sed0022517 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12955.1	5.1e-06	30.08	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 61..103
None	No IPR available	PANTHER	PTHR31374:SF195	EXPRESSED PROTEIN	coord: 61..103
None	No IPR available	PANTHER	PTHR31374:SF195	EXPRESSED PROTEIN	coord: 6..70
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 6..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022517.1	Sed0022517.1	mRNA