Sed0022420 (gene) Chayote v1

Overview


Name	Sed0022420
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic
Location	LG06: 40709700 .. 40714117 (+)
RNA-Seq Expression	Sed0022420
Synteny	Sed0022420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAAGAATAATTTTGTTAAGTATTCAAACAAAAAAAAAAAAGAATATTTTTGTTAATGTGCATGTAATATCAACACGGATAAATATTTTTGAAAAAATTACTAAAATTAAAATATTGGAATTTTACACTGTATAACAACTTTTTTACCACAGTTTACAATTATAGTACATTTTAAAAAACAATTTATTTATAGCAAATTCTGCCATTTTTTATAAATAAATTTATTTAACTTTTTTATGAGGGAAGTCTATCAATTTCATTAGTAATTGATTCTGTCAGTTCTTATTGATAAAATGTTATGGAAATCTATCAATTAATCGATTCTATCGGCCTCTATCAATAGAATTTTTCAATATGGAAGCCTATCCATTTACTTTTTTTTTTTTGTATATATAAATATTTTTATTATCATACTATTCATGAAATATTTTAACTATTTTGTAATATAAATCCAAAAGTCCCTAAAATATTTATGAATTTTCACAAATTACTTAAAACAACTAAAAAAAAACATAGGTTGAAATTTTAGAAAGTAACTATTTTCTTACTTTCTTCTTCTTCTTCTTCTCCGTCACTGCAATTCCGTGGAGTTCCAATTTCATCCCTCAGTGAAGTTACAGAGCGCCGAAGCCTTCTTCTAGGGATTCCCAAAATCGGCGATTCCGTTCGGAGTTTCCCCATTTACGTCGGAGCAATTTCTCTCTTCATCGTCCTCTTTCAACGACGATCCCACCAGGTTCACCGCTCAATTTTTTAACTAATTTGTCGATTTTTGTTTGTTTCCACAACTCGGTCAATACGTATTGTTTATTCTGGAATGTAATAGATGCAATAACTACAATGAGTAGTGAATTAAGAGAATAAATCAACTATTTGTTGACGGGAGGGTGGAATTTCTATCTTCGATTACTACGTTTTCCTATTTTGGCAGCGTGATCCTGCAACTAACATTCGATTTGAGCATTGATTCATCGTAGTTATTTGTTATATTTGTATCCATGAACAACTATAAATGATTTGTTCAATTAACCCTTGGCCTAGCTGTTGTGAATGTCGAGGAGGTTTCTATTCTAGTTCCTTTTGATTTTTCCCCCTGACTTTTGTTTCTCCTATCAGGTAAATCCATAAGGGGTGATATGTGAGAGGTTAAGCTCGAGATATGTAGTGGGGGTGAAGCTCCAATTTCCCGATTATCGAAGAAAAAAAACACTTGTGAATTTGATCAAGTATTGAAGGCGGTTAAGATCGAGCAATACTTAGGTTAGGGTGGGTAAGTATACCCTTAGAACGACATATTTTTACTTTTTTGTATTTCTCTCTCCATCAATCAAAGCCAATTTTTTTTTTTAAAAAAAGTAAAAATAAGTGGCTACCCACCCTTACCTAAGTATTGCTCGTTAAGATCATTGAAAATCACTTGGGATAGGGTGATTTGTTTGACTTGGTTTATGGAGGTAGATGAGTGAAATTTAGATAGCGTGTTTGAGAGTAATGTGTTTGTTTCTATTAGTTTCTCCATTGTCTTAAAAGAATTTTAATATCCATCTCCTCATTGTCGTATGTTCATGGAAATGCTTTGTATCTGATAAATTACCTTTTATATTTGGCGCTAAGGATGCTTAGGGGAGAAAGGGATAAATCCAGGACTATAAGGTTGATGGTTACTTTTTGCTGCCTATTCTTAGGGTATGGAAGTCTCTGTCAGAAGTGTCATGCTGCAGTTCTCTGGTTGTTGTTTATGATGGTATGTGTTTATTTCAAGTTGGTGTTGCTGCTGAATCAGCTGAAGCCTGAAGGTGATGGTGAGGTCGAACACGTGGAAACTAGTAAATTGATGCGGGGATCGCTCTATCAAGGAATTCTCAAATCTCGAAGTCGTGTGTAGTAAATGACCTGTGCACAGAGACCATAACACAATGTACTACTTGATTGTGGTGCAATTATAAATATCTACAACTATTTGTTTCGAGAGAGTATCTTTCCTATTTTGCAGAGACCTACTTGGCCAATCTATCTCTTCCATCAAATACTCAGGTATATTGATTAATACTATTCAGGTTGTTGTTAGATTTGTTCCTTTTTTCTGGTATATATAACTGGCAGATAGTTTTCTACAGTTGCGTTTTTCTTGGGTATTGTCCACTCTTAATAGCTGGTTGGCATATAATCGAGTAAACTCGTTTAGTTAATCTATGTATCAGTATGAATGAAGCTTGAGTTTGAAGCTTCATGTGGTGCACTTGAAGAGTAATTTGGATGTTAGCAACTTAGCACGTGTTATTAGCTATTGCATTTCTACATATTCTCTTTCAGAAACTTGCGAGTTTTTCTCCTGTCTGCTGTCTAAAAAGAGTGTCTCCTTTGTGGATACTGAGACTGTACTTATTCTCTGAAACCAGATTCTGCTATTTGGCAAAACAGGGAGGAATGTGATGAAATTTTCAATTTGTATTGTAATTTATTTTAGGTTCTATCAAATAAATAGGATTTGATTCTTCACCTGTCTACTTTATGTGCTTCCTTATTTAGAAGATGGTTGCTAATTCAACACCTGAAGATGGTTGTTTTTTAATCTAAGAGACTGGTACTAGTCTATAATTTTTTCTTTTGAACTGAAAACAAAACTTTTCATAAAATGCTAATGCTCAAAAGAAACTTTTCATAAAATGCTAACTGAAGCATGTGACAATACTTCAGTGAATATGTGGAGATAAACTCCATTTTCATAGCAAAGGGAACCAATCAAACCGGAAGTTTCCAATGGCTAAATACTTGAAACAGCAAGTGAGCCAACCTTTAAAGGAGAATCACATGACCAAAAGGCATTCCAGACTCGCCAAAGACACCACATTCTCCCAACTAATGATTTTTGAAAACCATGTGGATTTGATGAATCTCTTGACAAAAGAGCCAACCTTTGTTTTGAGAAAAAATCAAAGGAATACCTTCTGCCAAGGCACTTTAAACAATGCATTTGAGGACTGGGTGAAGGAATCTCCTGCAACTGAAGACCACTAATTGCAATAAGGGATGAAAACTTGCTAGGTATTGTATAACTTTTTTTCTAAAAATTGTTCCCAAGGGGTGGCACATTGGTTGAAAAGATTTGGGCTTTGAGCTTTTAGGGTATGCTCCCCTCAAGGTCCCGGGTTCGAGACTCACTTGTGATATTACTCATTCGATGTCTTCAGTGTCTGGCCTAGAGACGGGCGTGATTATCTTGTTTTAAAAAAAAACTTTTTTTTCTAAAAACAACTGAGTTACTGTATGCTTAAATGTCCCTGCTCATCAGCACATATGGGTGAAGGAGGAATAATTTTATTTCTTCTATTAGAAAAAGGGACAACAAATTAAAAAAGATAACAAAGGAGAAAAAGTGCATGGAAAAAGTAGCATTAGAGAAATATTTACCCAATCATAATTTTACTAGTTCTTCATCCAAAAAAATAATTTTACTAGTTTTTTTTTCCAAAAAGAACAAAAACTGTTAAAAATTCAAGTTCTATATAACACATAACATCTCTCTCTTGTATGCTTAGATAGTATTTGATTGTAAGAATTCCAATGAGCTACTTTTTTCCGCCTCCAACCTCATCAACATGCTTTACATCACTGCTTGTTTGGAGGGTAATTTTAAAATTTTCGTATTGGCACAGATTTGTACTACTACTACTATCAAATGAACACCGAACGAGTGAATTTGTTACCGTTAGTTTGTGCTCACTGCATCATACTCATGCTTGATAGGCAGGTATTTAAAATAAAATTGAAACCACAGCTTTCTAAGACAAATCTGCTCTTCTAGGCTGTAATTTTGCAACCACTGGGGGAGAAGGGTATCGCTATAATTGGTGGCAACACAATAAGAGGTTTCACAACCTCTGATCAGGTACTTGTTCTTAATCCTCTCGGCTCTTTTCTTATTGGGACTCTTGTTAATATATGTAGTTTTATTTTCCTGAGGAGGGCACTTGTTTGGTGCCACATATTGTTTCTATTCTTTTGCAAAGATTTAATAAATAGAACTGCAGTTCTCTGTCTATCTGTCTGTTTTCCTAAAGCCCCAAGTTCAACTAATTTGCCAAGCACCGGAAAGGTTGAAAAATTGGTGCTGGATATTGTTCTATTTTTGCTTCAGTTTGCTGCATATTGCCTAGTAGTACCCCTCCATTCCACTCTTCCTCCCTCCCCCTGGAAGGGATGAAATGAATGTTGTGGTAGTTTCTATTATCTGAATATTGATAGTGACAACCTTTTTCTTTTTTCTTTCTATGGCATAATTACAATTTCTTGCTTCAAATTCAAAATGTAAACAGGCAGGGATTGCACTAGCGAAGAGAAGCTGGATGCTACTCAGTTAAAGTATTTGAATAATTTTGAGACAGCAGTAAATTTGACCTCGAAGGATAACTGA

mRNA sequence

ATGAAAGTAACTATTTTCTTACTTTCTTCTTCTTCTTCTTCTCCGTCACTGCAATTCCGTGGAGTTCCAATTTCATCCCTCAGTGAAGTTACAGAGCGCCGAAGCCTTCTTCTAGGGATTCCCAAAATCGGCGATTCCGTTCGGAGTTTCCCCATTTACGTCGGAGCAATTTCTCTCTTCATCGTCCTCTTTCAACGACGATCCCACCAGGTTGATGGTTACTTTTTGCTGCCTATTCTTAGGGTATGGAAGTCTCTGTCAGAAGTGTCATGCTGCAGTTCTCTGGTTGTTGTTTATGATGGTATGTGTTTATTTCAAGTTGGTGATGGTGAGGTCGAACACGTGGAAACTAGTAAATTGATGCGGGGATCGCTCTATCAAGGAATTCTCAAATCTCGAAGTCAGACCTACTTGGCCAATCTATCTCTTCCATCAAATACTCAGGCTGTAATTTTGCAACCACTGGGGGAGAAGGGTATCGCTATAATTGGTGGCAACACAATAAGAGGTTTCACAACCTCTGATCAGAAGCTGGATGCTACTCAGTTAAAGTATTTGAATAATTTTGAGACAGCAGTAAATTTGACCTCGAAGGATAACTGA

Coding sequence (CDS)

ATGAAAGTAACTATTTTCTTACTTTCTTCTTCTTCTTCTTCTCCGTCACTGCAATTCCGTGGAGTTCCAATTTCATCCCTCAGTGAAGTTACAGAGCGCCGAAGCCTTCTTCTAGGGATTCCCAAAATCGGCGATTCCGTTCGGAGTTTCCCCATTTACGTCGGAGCAATTTCTCTCTTCATCGTCCTCTTTCAACGACGATCCCACCAGGTTGATGGTTACTTTTTGCTGCCTATTCTTAGGGTATGGAAGTCTCTGTCAGAAGTGTCATGCTGCAGTTCTCTGGTTGTTGTTTATGATGGTATGTGTTTATTTCAAGTTGGTGATGGTGAGGTCGAACACGTGGAAACTAGTAAATTGATGCGGGGATCGCTCTATCAAGGAATTCTCAAATCTCGAAGTCAGACCTACTTGGCCAATCTATCTCTTCCATCAAATACTCAGGCTGTAATTTTGCAACCACTGGGGGAGAAGGGTATCGCTATAATTGGTGGCAACACAATAAGAGGTTTCACAACCTCTGATCAGAAGCTGGATGCTACTCAGTTAAAGTATTTGAATAATTTTGAGACAGCAGTAAATTTGACCTCGAAGGATAACTGA

Protein sequence

MKVTIFLLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRRSHQVDGYFLLPILRVWKSLSEVSCCSSLVVVYDGMCLFQVGDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLSLPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQKLDATQLKYLNNFETAVNLTSKDN

Homology

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BLAST of Sed0022420 vs. NCBI nr
Match: XP_022956789.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita moschata] >KAG6601389.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.5 bits (467), Expect = 9.0e-43
Identity = 127/274 (46.35%), Postives = 148/274 (54.01%), Query Frame = 0


Query: 7   LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQR 66
           ++ +SS +    +RG P  S   V E       + K  D+VRS PIYVG ISL +VLF R
Sbjct: 32  IIRASSLNSQASYRG-PKPSTDWVAE------WVSKNNDAVRSLPIYVGGISLLVVLFNR 91

Query: 67  R--------------------------SHQVDGYFLLPI--------------------- 126
                                      ++ + G   L I                     
Sbjct: 92  AVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVWLSIRPKSITPVNPQGVECERICSS 151

Query: 127 ---------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMR 186
                    L VWKSLSEV+CC SLVVVYDGMC+FQV        GDGE EHVE SKLM+
Sbjct: 152 LPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQVGFAAESAEGDGEAEHVEASKLMQ 211

Query: 187 GSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFT 199
           GSLY+GILKS++Q+YLANLS          LPSNTQAVILQPLGEKGIAIIGGNTIRGFT
Sbjct: 212 GSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQAVILQPLGEKGIAIIGGNTIRGFT 271

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BLAST of Sed0022420 vs. NCBI nr
Match: KAG7032167.1 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-42
Identity = 127/275 (46.18%), Postives = 147/275 (53.45%), Query Frame = 0


Query: 7   LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQR 66
           ++ +SS +    +RG P  S   V E       + K  D VRS PIYVG ISL +VLF R
Sbjct: 32  IIRASSLNSQASYRG-PKPSTDWVAE------WVSKNNDGVRSLPIYVGGISLLVVLFNR 91

Query: 67  R--------------------------SHQVDGYFLLPI--------------------- 126
                                      ++ + G   L I                     
Sbjct: 92  AVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVWLSIRPKSITPVNPQGVECERICSS 151

Query: 127 ---------LRVWKSLSEVSCCSSLVVVYDGMCLFQV---------GDGEVEHVETSKLM 186
                    L VWKSLSEV+CC SLVVVYDGMC+FQV         GDGE EHVE SKLM
Sbjct: 152 LPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQVGFAAAESAEGDGEAEHVEASKLM 211

Query: 187 RGSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGNTIRGF 199
           +GSLY+GILKS++Q+YLANLS          LPSNTQAVILQPLGEKGIAIIGGNTIRGF
Sbjct: 212 QGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQAVILQPLGEKGIAIIGGNTIRGF 271

[Close]

BLAST of Sed0022420 vs. NCBI nr
Match: XP_022984820.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 181.8 bits (460), Expect = 5.8e-42
Identity = 126/274 (45.99%), Postives = 147/274 (53.65%), Query Frame = 0


Query: 7   LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQR 66
           ++ +SS +    +RG P  S   V E       + K  D+VRS PIYVG ISL +VLF R
Sbjct: 32  IIRASSLNSQASYRG-PKPSRDWVAE------WVSKNNDAVRSLPIYVGGISLLVVLFNR 91

Query: 67  R--------------------------SHQVDGYFLLPI--------------------- 126
                                      ++ + G   L I                     
Sbjct: 92  AVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVWLSIRPKSITPVNPQGVECERICSS 151

Query: 127 ---------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMR 186
                    L VWKSLSEV+CC SLVVVYDGMC+FQV        GDGE EHVE SKLM+
Sbjct: 152 LPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQVGFAAESAEGDGEAEHVEASKLMQ 211

Query: 187 GSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFT 199
           G LY+GILKS++Q+YLANLS          LPSNTQAVILQPLGEKGIAIIGGNTIRGFT
Sbjct: 212 GLLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQAVILQPLGEKGIAIIGGNTIRGFT 271

[Close]

BLAST of Sed0022420 vs. NCBI nr
Match: XP_022151122.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 181.0 bits (458), Expect = 9.9e-42
Identity = 127/274 (46.35%), Postives = 151/274 (55.11%), Query Frame = 0


Query: 9   SSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR- 68
           SSSSSSP  ++RG P  +   V +       + +  D+VRS PI+VG ISL +VLF R  
Sbjct: 45  SSSSSSPG-RYRG-PKPTRDWVAD------WVTQNDDAVRSLPIFVGGISLLVVLFNRAV 104

Query: 69  -------------------------SHQVDGYFLLPI----------------------- 128
                                    ++ + G   L I                       
Sbjct: 105 SGIAPVADASSSQSRADLLTLGLAVTNVLAGLVWLSIRPKSITPVNTQGVACKRMCSSLP 164

Query: 129 -------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGS 188
                  L VW+SLSEV+CC SLVVVYDGMCLFQV        GDGE EHV+ S+LM+GS
Sbjct: 165 DLVTFELLWVWESLSEVTCCRSLVVVYDGMCLFQVGFAAESVEGDGEAEHVDASELMQGS 224

Query: 189 LYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTS 201
           LYQGI KSR+Q+YLANLS          LPSNTQAVILQPLG+KGIA+IGGNTIRGFTTS
Sbjct: 225 LYQGIRKSRAQSYLANLSLYPGKSELPFLPSNTQAVILQPLGDKGIAVIGGNTIRGFTTS 284

[Close]

BLAST of Sed0022420 vs. NCBI nr
Match: XP_023513804.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.9 bits (455), Expect = 2.2e-41
Identity = 124/274 (45.26%), Postives = 147/274 (53.65%), Query Frame = 0


Query: 7   LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQR 66
           ++ +SS +    +RG P  S   V E       + K  D+VRS PIYVG ISL +VLF R
Sbjct: 32  IIRASSLNSQASYRG-PKPSTDWVAE------WVSKNNDAVRSLPIYVGGISLLVVLFNR 91

Query: 67  R--------------------------SHQVDGYFLLPI--------------------- 126
                                      ++ + G   L I                     
Sbjct: 92  AVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVWLSIRPKSITPVNPQGVECERICSS 151

Query: 127 ---------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMR 186
                    L VWKSLSEV+CC SLV+VYDGMC+FQV        GDG+ EHVE  KLM+
Sbjct: 152 LPDLVTSELLWVWKSLSEVTCCRSLVIVYDGMCIFQVGFAAESAEGDGDGEHVEACKLMQ 211

Query: 187 GSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFT 199
           GSLY+GILKS++Q+YLANLS          LPSNTQAVILQPLGEKGIAIIGGNTIRGFT
Sbjct: 212 GSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQAVILQPLGEKGIAIIGGNTIRGFT 271

[Close]

BLAST of Sed0022420 vs. ExPASy Swiss-Prot
Match: Q6NQK9 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB4 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-30
Identity = 91/227 (40.09%), Postives = 115/227 (50.66%), Query Frame = 0


Query: 40  IPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDG 99
           I K  D VRS PIYVG  SL  VLF R                           ++ + G
Sbjct: 59  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 118

Query: 100 YFLLPI------------------------------LRVWKSLSEVSCCSSLVVVYDGMC 159
              L I                              L  W+SL   +CC SLV+VY+G+C
Sbjct: 119 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 178

Query: 160 LFQVG-------DGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS----------LPSN 186
           L Q+G       D +   V+T KLM+GS+Y+G++KS++Q+YLANLS          LP+N
Sbjct: 179 LIQIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPAN 238

[Close]

BLAST of Sed0022420 vs. ExPASy TrEMBL
Match: A0A6J1H029 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458387 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 4.4e-43
Identity = 127/274 (46.35%), Postives = 148/274 (54.01%), Query Frame = 0


Query: 7   LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQR 66
           ++ +SS +    +RG P  S   V E       + K  D+VRS PIYVG ISL +VLF R
Sbjct: 32  IIRASSLNSQASYRG-PKPSTDWVAE------WVSKNNDAVRSLPIYVGGISLLVVLFNR 91

Query: 67  R--------------------------SHQVDGYFLLPI--------------------- 126
                                      ++ + G   L I                     
Sbjct: 92  AVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVWLSIRPKSITPVNPQGVECERICSS 151

Query: 127 ---------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMR 186
                    L VWKSLSEV+CC SLVVVYDGMC+FQV        GDGE EHVE SKLM+
Sbjct: 152 LPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQVGFAAESAEGDGEAEHVEASKLMQ 211

Query: 187 GSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFT 199
           GSLY+GILKS++Q+YLANLS          LPSNTQAVILQPLGEKGIAIIGGNTIRGFT
Sbjct: 212 GSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQAVILQPLGEKGIAIIGGNTIRGFT 271

[Close]

BLAST of Sed0022420 vs. ExPASy TrEMBL
Match: A0A6J1J9M5 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482990 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.8e-42
Identity = 126/274 (45.99%), Postives = 147/274 (53.65%), Query Frame = 0


Query: 7   LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQR 66
           ++ +SS +    +RG P  S   V E       + K  D+VRS PIYVG ISL +VLF R
Sbjct: 32  IIRASSLNSQASYRG-PKPSRDWVAE------WVSKNNDAVRSLPIYVGGISLLVVLFNR 91

Query: 67  R--------------------------SHQVDGYFLLPI--------------------- 126
                                      ++ + G   L I                     
Sbjct: 92  AVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVWLSIRPKSITPVNPQGVECERICSS 151

Query: 127 ---------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMR 186
                    L VWKSLSEV+CC SLVVVYDGMC+FQV        GDGE EHVE SKLM+
Sbjct: 152 LPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQVGFAAESAEGDGEAEHVEASKLMQ 211

Query: 187 GSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFT 199
           G LY+GILKS++Q+YLANLS          LPSNTQAVILQPLGEKGIAIIGGNTIRGFT
Sbjct: 212 GLLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQAVILQPLGEKGIAIIGGNTIRGFT 271

[Close]

BLAST of Sed0022420 vs. ExPASy TrEMBL
Match: A0A6J1DCN6 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019127 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 4.8e-42
Identity = 127/274 (46.35%), Postives = 151/274 (55.11%), Query Frame = 0


Query: 9   SSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR- 68
           SSSSSSP  ++RG P  +   V +       + +  D+VRS PI+VG ISL +VLF R  
Sbjct: 45  SSSSSSPG-RYRG-PKPTRDWVAD------WVTQNDDAVRSLPIFVGGISLLVVLFNRAV 104

Query: 69  -------------------------SHQVDGYFLLPI----------------------- 128
                                    ++ + G   L I                       
Sbjct: 105 SGIAPVADASSSQSRADLLTLGLAVTNVLAGLVWLSIRPKSITPVNTQGVACKRMCSSLP 164

Query: 129 -------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGS 188
                  L VW+SLSEV+CC SLVVVYDGMCLFQV        GDGE EHV+ S+LM+GS
Sbjct: 165 DLVTFELLWVWESLSEVTCCRSLVVVYDGMCLFQVGFAAESVEGDGEAEHVDASELMQGS 224

Query: 189 LYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTS 201
           LYQGI KSR+Q+YLANLS          LPSNTQAVILQPLG+KGIA+IGGNTIRGFTTS
Sbjct: 225 LYQGIRKSRAQSYLANLSLYPGKSELPFLPSNTQAVILQPLGDKGIAVIGGNTIRGFTTS 284

[Close]

BLAST of Sed0022420 vs. ExPASy TrEMBL
Match: A0A0A0KQF1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603980 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 125/276 (45.29%), Postives = 148/276 (53.62%), Query Frame = 0


Query: 7   LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQR 66
           ++ +SSS+    +RG P  S + V +       +    D+VRS PIYVG ISL IVLF R
Sbjct: 32  IVRASSSTSQRSYRG-PKPSTNLVAD------WVSNNDDTVRSLPIYVGGISLLIVLFNR 91

Query: 67  R--------------------------SHQVDGYFLLPI--------------------- 126
                                      ++ + G   L I                     
Sbjct: 92  AVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVWLSIRPKSITPVNPLGVENERICSS 151

Query: 127 ---------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMR 186
                    L VWKSLSEV+CC SLVVVYDG C+FQV        G+GE EHVE  KLM+
Sbjct: 152 LPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQVGFAAESAEGNGEAEHVEAGKLMQ 211

Query: 187 GSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFT 201
           GSLY+G+LKS++Q+YLANLS          LPSNTQAVILQPLGEKGIAIIGGNTIRGFT
Sbjct: 212 GSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQAVILQPLGEKGIAIIGGNTIRGFT 271

[Close]

BLAST of Sed0022420 vs. ExPASy TrEMBL
Match: A0A6J1DBC0 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019127 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-40
Identity = 124/267 (46.44%), Postives = 146/267 (54.68%), Query Frame = 0


Query: 9   SSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR- 68
           SSSSSSP  ++RG P  +   V +       + +  D+VRS PI+VG ISL +VLF R  
Sbjct: 45  SSSSSSPG-RYRG-PKPTRDWVAD------WVTQNDDAVRSLPIFVGGISLLVVLFNRAV 104

Query: 69  -------------------------SHQVDGYFLLPI----------------------- 128
                                    ++ + G   L I                       
Sbjct: 105 SGIAPVADASSSQSRADLLTLGLAVTNVLAGLVWLSIRPKSITPVNTQGVACKRMCSSLP 164

Query: 129 -------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGS 188
                  L VW+SLSEV+CC SLVVVYDGMCLFQV        GDGE EHV+ S+LM+GS
Sbjct: 165 DLVTFELLWVWESLSEVTCCRSLVVVYDGMCLFQVGFAAESVEGDGEAEHVDASELMQGS 224

Query: 189 LYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTS 194
           LYQGI KSR+Q+YLANLS          LPSNTQAVILQPLG+KGIA+IGGNTIRGFTTS
Sbjct: 225 LYQGIRKSRAQSYLANLSLYPGKSELPFLPSNTQAVILQPLGDKGIAVIGGNTIRGFTTS 284

[Close]

BLAST of Sed0022420 vs. TAIR 10
Match: AT1G59840.1 (cofactor assembly of complex C )

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-31
Identity = 91/227 (40.09%), Postives = 115/227 (50.66%), Query Frame = 0


Query: 40  IPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDG 99
           I K  D VRS PIYVG  SL  VLF R                           ++ + G
Sbjct: 59  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 118

Query: 100 YFLLPI------------------------------LRVWKSLSEVSCCSSLVVVYDGMC 159
              L I                              L  W+SL   +CC SLV+VY+G+C
Sbjct: 119 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 178

Query: 160 LFQVG-------DGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS----------LPSN 186
           L Q+G       D +   V+T KLM+GS+Y+G++KS++Q+YLANLS          LP+N
Sbjct: 179 LIQIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPAN 238

[Close]

BLAST of Sed0022420 vs. TAIR 10
Match: AT1G59840.2 (cofactor assembly of complex C )

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-31
Identity = 91/227 (40.09%), Postives = 115/227 (50.66%), Query Frame = 0


Query: 40  IPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDG 99
           I K  D VRS PIYVG  SL  VLF R                           ++ + G
Sbjct: 59  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 118

Query: 100 YFLLPI------------------------------LRVWKSLSEVSCCSSLVVVYDGMC 159
              L I                              L  W+SL   +CC SLV+VY+G+C
Sbjct: 119 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 178

Query: 160 LFQVG-------DGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS----------LPSN 186
           L Q+G       D +   V+T KLM+GS+Y+G++KS++Q+YLANLS          LP+N
Sbjct: 179 LIQIGMVAESPEDKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPAN 238

The following BLAST results are available for this feature:

BLAST of Sed0022420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956789.1	9.0e-43	46.35	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ...	[more]
KAG7032167.1	1.5e-42	46.18	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ...	[more]
XP_022984820.1	5.8e-42	45.99	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ...	[more]
XP_022151122.1	9.9e-42	46.35	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 ...	[more]
XP_023513804.1	2.2e-41	45.26	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ...	[more]

BLAST of Sed0022420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQK9	1.8e-30	40.09	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidop...	[more]

BLAST of Sed0022420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H029	4.4e-43	46.35	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbit...	[more]
A0A6J1J9M5	2.8e-42	45.99	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbit...	[more]
A0A6J1DCN6	4.8e-42	46.35	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 ...	[more]
A0A0A0KQF1	1.4e-41	45.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603980 PE=4 SV=1	[more]
A0A6J1DBC0	1.5e-40	46.44	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X2 ...	[more]

BLAST of Sed0022420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G59840.1	1.3e-31	40.09	cofactor assembly of complex C	[more]
AT1G59840.2	1.3e-31	40.09	cofactor assembly of complex C	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021325	Cofactor assembly of complex C subunit B, CCB2/CCB4	PFAM	PF11152	CCB2_CCB4	coord: 82..177 e-value: 2.0E-15 score: 56.7
IPR044705	COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4	PANTHER	PTHR34943	FAMILY NOT NAMED	coord: 73..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022420.1	Sed0022420.1	mRNA