Sed0022412 (gene) Chayote v1

Overview
NameSed0022412
Typegene
OrganismSechium edule (Chayote v1)
Descriptionkeratin, type II cytoskeletal 3 isoform X1
LocationLG10: 33262770 .. 33267632 (-)
RNA-Seq ExpressionSed0022412
SyntenySed0022412
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCGGCCATTATTTTTTGACTTGGATTACTTAGATTATTTGAAGAGTTATTACAAATGAAAAATTGACAAATTTATTTATGTGAGTTTTTTTTTTTTTTTTAAAGGTTTGGCGATAATTTGTATGGTGAGTTTCCTCATTAAATCTTTGGATTCTTTCCGTGTAGTTACTGGTGACCAAAAGTGGAAGCAAGAGATGCCTCGAAATCCGAACGGAAACCGACGGGAAGATGAGAGTGGATTACTGTGGAAGCTACCACTTCTCAAATCTTCCACAATCGGGAAGCTAGGTCCCGCTTTCGGTCTCGGCGTCGGTTGCGGCGTCGGCTTTGCCGTCGGCCTCGTCGGAGGTTAATTCTTCTTCCTTTCTCTCTTTCCCCTCCTTTTTTGTTCGCTTAAAATGGATTAGATCGACGGAATCATTGTGTTTTAAGTCGCGTTCATCAGATCCTGTGATACTTAGCTTTAACTGAATTGAAATTTTCGCCCCCATGGATTTTTCTGCCCTGCAACTTGCCGATTGTATTGGTTAGGGTTAGAATTGACTGATTAGCCATTAACGATTAGAAATGAGTAATAAAGAGTGAGTGATTACAATAGCTTGTTTGATTGTGATTGTTTAAAAGGAATTGTAAAAGCTCCTTTGTAATTGCTCGTTATTTGCCTCTCCCTTAGGAGTGACACAATGGTTGAAGACTTGAGCTTTGAGGGTATGCTCCTCTCAAGGTTCCAGGTTCGAGACTCAGCTGTGACACAGACACTACTCTTTCGATGTCTCCCGGTGCCTGGCCTAGGGACGGGCGTGGTTACCCTTATTTAAAAAAAAAACAAACACCCCCTTATTGAATTAGAGGGTGCGTTAGGTTGGGTGGGGGTTTTCAGTTTGTTTTGGTCCAGGCTGATAATCGTTTCATGATGATTTTTATTGCATCTTAAATGTTTCTTGCACTATGGTTGAAAGAATTTGGGATTTTTATTGTTATTTTGATAGAATCTACCACACTTTTTATTAAACTACGATAATTCTCTCGAGAGGATCTTTCAAAGAGCCAGAGTACAAAGATGACAATTCAATGGATGAATAACAATCACCTAACATCTCCTATTTATAACCCTAAACCCTAATTTAACCTAATCAATAAAAGACTAATAATAGGCCCAAGCCCAATACAGGTAAAAGGACAATTAACTAATAATTAATAAATACTAATATTCCTAAAACTCCAATGGCCGGATCGTATCATATGTCTCCTGCTGAAATTCTGTGGTCTTACAATTTGTCTCTAGTTTAGTTTGCTTTTGATCAGTGTTTTGAAGTAGACCACATATGAGCTCAATTCTAGATCATGAAATTTCTATTTTTCAATAAAGTTATGATAAAATAATGCTTTGGTTAAAATATGTTTTAACACATTGCAGCGTATTATCCATAACATAACAACATATTTTATAAGCCTAGGAATTTTTTGTTTTCCAAATAGCCTTATAAGTCCGAGGTATAGGAGAAACCAATCCAAGTTGTCGCGTTAATGAACGAACCGAGTCGTACCAGAAGGCTCATGGGAATCATGGGATCATTATCTTTTATCTTCAGAAATCTCACCCAACCACCACTGTATTTAGAAGGCTTAACAAAGATTTCAGCTCCTTAATCTCATCATTGCCAACAAGAGTATAAGTCTTCTACAGTACACATTCCAAGCCTTCAACTTAGAGTCCTAAAATTCAGAAATAGACTTGTCAAGAGCTAGAAAGATGTTGAAAAGCCCTGAGAACCGAGACTTGATATTAATATCTCCAATCCAAATGTGATGCCATGCCAAAAGAATATACGAGTCCCATTACCCAATTTAAACGCAACAAAGGACACAAATCGGTTCAGCCAAGAACTTATGAGGCTCAACAATGTTTACAACTATGGGTCAGTCAAAAGTTTTTTTTTTTGGGAAAATAAACAATTTCATTGATAGATGAAAAAATGAGAGGACTTTGATCACCTAAAGGTTATTACAAGAAAGATCTTCAATTGGAGATGAAAACAATAAGCTAAAAAGATTCAATGGACAAACATGTTTGCACAAATATAGACATTAGAAAATACATTGTCAATCAAACGATCGAAGTTTAAGTAATCATCCTGAAAATTCTTTCGTTCCAACCAAATGTTCCATAAGAAAGCTCTAACCGTCCCGAGCCATATAGTCTTCTTTAGACCTTTGAAAGGATATCCCACCAAAATAGTAGAAAAGAAGTAAAAAAACATTTTGAAAGAGAGAGGCACCAACCACTCATTGGCCTCCAACAAGCATAAGGACAATGAACAAACAAATGACCTACAGTTTCAGAGTCAGATTTGCACATAACACAGACATGAGATAAATTCATATAAGACATTCTTGTTTGATTGATACAAATATAACCCACCAGACTAAGTTCTCAAAGAAATTTTTTAATCTTCTTTGGATAAGAACCCTTCCAGATGACGGTATATAAGAGAGCAAGGGTTTGAATTAAAACTTCCAACATGTTGTTGTCATACCAACAAACCCGTAAAGTGTCATCTACAAATTGTAGTCTCAAAACCTGACATTTTTCCCTTTCCGCTAGTACTCCTTCAAACAAGCCTTTAGTGCATATTCTTTACAAAGACACTTAACACGTCTGAAACAAAGGGAAAGAGGATCTCGTTGATGAATTCCTTTAGAAGCTATTCGTTCTTTAGGCCATCCATTAATGAAATTAAAAAAATTGTGGTTCCTTACACCTGCTAATCCATTGAATTGGTTAACACAGTTTTGTTTTTTAAGATATAGCATCTCTTCCCGGATGTCTCAGTCAACATTATCATTTATCAAAGGCCTTTACAATATCCAACTTTAAAACCCAACCCCTTTTCCTCTTGGATCTATAATCCTCCACAACCTCGTTCACTGTCAAGATTGGATCAAGAATTTTCCAATCTCCAATGAAAGCGCTTTGACAATGGAAATAATAGTAATTCTCTTTAATCTCTCTGCCAAGACCTTAGCAAGGACTTTATAAACAGATGAGGTCAAACTAATTATCATAAAATCCTTTATAGAAAAACATCTTTCTTTGAATAAGACAAATGAAGTTCTTCTTCAAAGCCGAATTGATATGCCTGTTAAATAGAACTCTTTGAATATCTGAACCATGCATGACTTCCTTCATTGGCAACTAAAAGAAGCTATCATGGATTTTGGGTTTCGATAAAAGCTAGGGCTTTAGTTTTGAACTAATAAATATTATCGTTGTGCAAATTTTGTTTTTAACTTTACACCGGTGTACTATATACCTGTTTTATGTAAACTACTTAAATATATGTATTTGCAAAAAAAATGTTCTCCACTCCAGGTGCTGGATTTGGTCCTGGAATTCCTGGCTTACAACTTGGCTTTGGTGTTGGTGCTGGATGTGGAATTGGCTTAGGATTTGGCTATGGCGTGGGCAGGGGCATTGCTCAAGATGACAAACGGAGATACTCTAATGTTGGGGATCTATTACATGGTCATCAAAGTATATTTTCTCAGTAAGTTCTGAAAACTCACTGGTTTTAGTTTGTGACTAACTGACCATCATGTTCTGTTGATGCATACATTATTACAAGGTAGGGAGGGATAAATGCCTTCTTAAGTTCTAATGTTGTTTTGGTCACATGGGTTTTCTAACCTGTTTCTAGCATATACCTTTCAAAAGCTAAATGTTTTTCAACATAAGTTTTAAACTCATGTTTTTTTTTAACAAGGGTAACAACGCCCGTCCCTATCTATCTCTCATGTTTTAAAACATTTTCCTTCAAACTCGGAGAAGTTGATCCATACAATCAAGATTGTCTGCGAGTTCTCATTTTGAAAAGGCTGACTTGCTCACCAAGTTCGAGCAAGTGCCGCATAGTCGTTGTTCCACTTCAAACGACGGTGACACTATTACCATTGTTACTATGAAGTAAAAGCTAACTATCATGGAGTGGCTCAATTGGTCAAAGAAGATCTTGGGGTACATAAGGTGATGGGTTCAATCCATGGTGGCCACCTACTAAGGAATTAATTTCCTATGGATTTCCTTGGCATTCAAATGTTGTAGGGTCAGGCGAGTATGTCCCTTGATATTAGTCAAGGTGCGCGTAAACTGGCCCGAACAGTCATAGATATCACAAAAAAAAAAAAAATGTAAAAGCAGGTTTACGAAGTTTGAAATCCATTGTTTTCCCCCTCAATGTGTTGTGTCCTCTTTCTGGTTCAGGTTCGACCAGGGGGGTGCTACTTTATCATCAAGAAGCGTTTCTGAATTTTCAATTTTACCTGATATCGATAGGGATGAGATTGGTGCGGTTGTTGACGAGCTTGTCCTCAATACAAGGAAGCTTATCCGAGCCACTTCAAAGGAGATCGACAAGTGGAAAAGATGAGATGACTTCATCTGTTTTTACTTTTTTCAAGTTCAATCCCCTCCCCCCATCATTAGAAACAACCATAATCCAAATCATAGAAGAAAAAACATGCTGGGTGTCTATATTGTGTTATTAGTCTGTGGCTTTAAATAGCCAAATTTCATGTACAATTGTTTCCAAAGATGAGGGTTTATGCGTTGGTAGAGAGCACCGAGTTTCTTTCAATTTTTCCTGCACTGTTTCCTGCCATAAGAAAATTTGTTTTTTGTTTTGTTTTTGGAACTTAACTAAGAATTTAAATGTTTTCTGAAGAGAAACAAAAAATTGTGGTAGACAAATTGAGAGAGAATATGCTTAATTTTTGTAATCCATAAATAAATAAATGAAATCCGTTTTATTTTGGGTTCTTCCACTTTTATCTTTAAACATCTCAGCTTTAAAAAATAAATAGC

mRNA sequence

ATTTCGGCCATTATTTTTTGACTTGGATTACTTAGATTATTTGAAGAGTTATTACAAATGAAAAATTGACAAATTTATTTATGTGAGTTTTTTTTTTTTTTTTAAAGGTTTGGCGATAATTTGTATGGTGAGTTTCCTCATTAAATCTTTGGATTCTTTCCGTGTAGTTACTGGTGACCAAAAGTGGAAGCAAGAGATGCCTCGAAATCCGAACGGAAACCGACGGGAAGATGAGAGTGGATTACTGTGGAAGCTACCACTTCTCAAATCTTCCACAATCGGGAAGCTAGGTCCCGCTTTCGGTCTCGGCGTCGGTTGCGGCGTCGGCTTTGCCGTCGGCCTCGTCGGAGGTGCTGGATTTGGTCCTGGAATTCCTGGCTTACAACTTGGCTTTGGTGTTGGTGCTGGATGTGGAATTGGCTTAGGATTTGGCTATGGCGTGGGCAGGGGCATTGCTCAAGATGACAAACGGAGATACTCTAATGTTGGGGATCTATTACATGGTCATCAAAGTATATTTTCTCAGGATGAGATTGGTGCGGTTGTTGACGAGCTTGTCCTCAATACAAGGAAGCTTATCCGAGCCACTTCAAAGGAGATCGACAAGTGGAAAAGATGAGATGACTTCATCTGTTTTTACTTTTTTCAAGTTCAATCCCCTCCCCCCATCATTAGAAACAACCATAATCCAAATCATAGAAGAAAAAACATGCTGGGTGTCTATATTGTGTTATTAGTCTGTGGCTTTAAATAGCCAAATTTCATGTACAATTGTTTCCAAAGATGAGGGTTTATGCGTTGGTAGAGAGCACCGAGTTTCTTTCAATTTTTCCTGCACTGTTTCCTGCCATAAGAAAATTTGTTTTTTGTTTTGTTTTTGGAACTTAACTAAGAATTTAAATGTTTTCTGAAGAGAAACAAAAAATTGTGGTAGACAAATTGAGAGAGAATATGCTTAATTTTTGTAATCCATAAATAAATAAATGAAATCCGTTTTATTTTGGGTTCTTCCACTTTTATCTTTAAACATCTCAGCTTTAAAAAATAAATAGC

Coding sequence (CDS)

ATGGTGAGTTTCCTCATTAAATCTTTGGATTCTTTCCGTGTAGTTACTGGTGACCAAAAGTGGAAGCAAGAGATGCCTCGAAATCCGAACGGAAACCGACGGGAAGATGAGAGTGGATTACTGTGGAAGCTACCACTTCTCAAATCTTCCACAATCGGGAAGCTAGGTCCCGCTTTCGGTCTCGGCGTCGGTTGCGGCGTCGGCTTTGCCGTCGGCCTCGTCGGAGGTGCTGGATTTGGTCCTGGAATTCCTGGCTTACAACTTGGCTTTGGTGTTGGTGCTGGATGTGGAATTGGCTTAGGATTTGGCTATGGCGTGGGCAGGGGCATTGCTCAAGATGACAAACGGAGATACTCTAATGTTGGGGATCTATTACATGGTCATCAAAGTATATTTTCTCAGGATGAGATTGGTGCGGTTGTTGACGAGCTTGTCCTCAATACAAGGAAGCTTATCCGAGCCACTTCAAAGGAGATCGACAAGTGGAAAAGATGA

Protein sequence

MVSFLIKSLDSFRVVTGDQKWKQEMPRNPNGNRREDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFSQDEIGAVVDELVLNTRKLIRATSKEIDKWKR
Homology
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BLAST of Sed0022412 vs. NCBI nr
Match: XP_023521209.1 (fibroin heavy chain isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.2 bits (622), Expect = 7.8e-61
Identity = 121/143 (84.62%), Postives = 133/143 (93.01%), Query Frame = 0 

Query: 25  MPRNPNGNR---REDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGP 84
           MPRN NG+R   REDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGP
Sbjct: 1   MPRNMNGSRHEGREDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 85  GIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFSQDEIGAVV 144
           GIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNVGDLL+GHQSIF QDEIGA+V
Sbjct: 61  GIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGHQSIFPQDEIGALV 120

Query: 145 DELVLNTRKLIRATSKEIDKWKR 165
           DEL LNT+KLIR T++EIDKWKR
Sbjct: 121 DELALNTKKLIRVTAREIDKWKR 143

[Close]
BLAST of Sed0022412 vs. NCBI nr
Match: XP_022974026.1 (keratin, type II cytoskeletal 3 isoform X2 [Cucurbita maxima])

HSP 1 Score: 241.9 bits (616), Expect = 3.9e-60
Identity = 121/143 (84.62%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 25  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGP 84
           MPRN NG+RR   EDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGP
Sbjct: 1   MPRNMNGSRREGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 85  GIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFSQDEIGAVV 144
           GIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNVGDLL+G QSIF QDEIGAVV
Sbjct: 61  GIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPQDEIGAVV 120

Query: 145 DELVLNTRKLIRATSKEIDKWKR 165
           DEL LNT+KLI+ T+KEIDKWKR
Sbjct: 121 DELALNTKKLIQVTAKEIDKWKR 143

[Close]
BLAST of Sed0022412 vs. NCBI nr
Match: XP_022932820.1 (keratin, type II cytoskeletal 2 epidermal isoform X2 [Cucurbita moschata])

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 119/143 (83.22%), Postives = 131/143 (91.61%), Query Frame = 0 

Query: 25  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGP 84
           MPRN NG+R    EDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGP
Sbjct: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 85  GIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFSQDEIGAVV 144
           GIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNVGDLL+G QSIF QDEIGA+V
Sbjct: 61  GIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPQDEIGALV 120

Query: 145 DELVLNTRKLIRATSKEIDKWKR 165
           DEL LNT+KLIR T++EIDKWKR
Sbjct: 121 DELALNTKKLIRVTAQEIDKWKR 143

[Close]
BLAST of Sed0022412 vs. NCBI nr
Match: XP_038889093.1 (ctenidin-1 isoform X1 [Benincasa hispida])

HSP 1 Score: 238.0 bits (606), Expect = 5.6e-59
Identity = 121/144 (84.03%), Postives = 131/144 (90.97%), Query Frame = 0 

Query: 25  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGP 84
           MPRN NGNR    EDE GLLW LP+LKSS  GKLGPAFGLGVGCGVGF +GLVGGAGFGP
Sbjct: 1   MPRNTNGNRHQGGEDEGGLLWNLPVLKSSRFGKLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 85  GIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFSQ-DEIGAV 144
           GIPGLQLGFG+GAGCG+GLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIF Q D+I A+
Sbjct: 61  GIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQKDDIVAL 120

Query: 145 VDELVLNTRKLIRATSKEIDKWKR 165
           VDELVLN+++LIRATS+EIDKWKR
Sbjct: 121 VDELVLNSKRLIRATSREIDKWKR 144

[Close]
BLAST of Sed0022412 vs. NCBI nr
Match: XP_023521208.1 (ATP-dependent RNA helicase glh-2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 5.6e-59
Identity = 120/144 (83.33%), Postives = 133/144 (92.36%), Query Frame = 0 

Query: 25  MPRNPNGNR---REDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGP 84
           MPRN NG+R   REDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGP
Sbjct: 1   MPRNMNGSRHEGREDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 85  GIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIF-SQDEIGAV 144
           GIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNVGDLL+GHQSIF  +DEIGA+
Sbjct: 61  GIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGHQSIFPHRDEIGAL 120

Query: 145 VDELVLNTRKLIRATSKEIDKWKR 165
           VDEL LNT+KLIR T++EIDKWKR
Sbjct: 121 VDELALNTKKLIRVTAREIDKWKR 144

[Close]
BLAST of Sed0022412 vs. ExPASy TrEMBL
Match: A0A6J1IA95 (keratin, type II cytoskeletal 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472645 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.9e-60
Identity = 121/143 (84.62%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 25  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGP 84
           MPRN NG+RR   EDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGP
Sbjct: 1   MPRNMNGSRREGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 85  GIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFSQDEIGAVV 144
           GIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNVGDLL+G QSIF QDEIGAVV
Sbjct: 61  GIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPQDEIGAVV 120

Query: 145 DELVLNTRKLIRATSKEIDKWKR 165
           DEL LNT+KLI+ T+KEIDKWKR
Sbjct: 121 DELALNTKKLIQVTAKEIDKWKR 143

[Close]
BLAST of Sed0022412 vs. ExPASy TrEMBL
Match: A0A6J1F360 (keratin, type II cytoskeletal 2 epidermal isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439279 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 119/143 (83.22%), Postives = 131/143 (91.61%), Query Frame = 0 

Query: 25  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGP 84
           MPRN NG+R    EDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGP
Sbjct: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 85  GIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFSQDEIGAVV 144
           GIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNVGDLL+G QSIF QDEIGA+V
Sbjct: 61  GIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPQDEIGALV 120

Query: 145 DELVLNTRKLIRATSKEIDKWKR 165
           DEL LNT+KLIR T++EIDKWKR
Sbjct: 121 DELALNTKKLIRVTAQEIDKWKR 143

[Close]
BLAST of Sed0022412 vs. ExPASy TrEMBL
Match: A0A6J1ICW2 (keratin, type II cytoskeletal 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472645 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 120/144 (83.33%), Postives = 132/144 (91.67%), Query Frame = 0 

Query: 25  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGP 84
           MPRN NG+RR   EDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGP
Sbjct: 1   MPRNMNGSRREGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 85  GIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIF-SQDEIGAV 144
           GIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNVGDLL+G QSIF  +DEIGAV
Sbjct: 61  GIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPHRDEIGAV 120

Query: 145 VDELVLNTRKLIRATSKEIDKWKR 165
           VDEL LNT+KLI+ T+KEIDKWKR
Sbjct: 121 VDELALNTKKLIQVTAKEIDKWKR 144

[Close]
BLAST of Sed0022412 vs. ExPASy TrEMBL
Match: A0A1S4E347 (glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103498610 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.3e-58
Identity = 119/144 (82.64%), Postives = 130/144 (90.28%), Query Frame = 0 

Query: 25  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGP 84
           MPRN NGNR    EDE GLLW LP+LKSS  G LGPAFGLGVGCGVGF +GLVGGAGFGP
Sbjct: 1   MPRNMNGNRNRDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 85  GIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIF-SQDEIGAV 144
           GIPGLQLGFG+GAGCG+GLGFGYGVGRGIAQDDKRRYSNVGD+L GHQSIF  QD+IGA+
Sbjct: 61  GIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDVLRGHQSIFPHQDDIGAL 120

Query: 145 VDELVLNTRKLIRATSKEIDKWKR 165
           VD+LVLNT++LIRATS+EIDKWKR
Sbjct: 121 VDDLVLNTKRLIRATSREIDKWKR 144

[Close]
BLAST of Sed0022412 vs. ExPASy TrEMBL
Match: A0A6J1DP59 (glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111023001 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 3.0e-58
Identity = 119/140 (85.00%), Postives = 131/140 (93.57%), Query Frame = 0 

Query: 30  NGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGL 89
           N NRR   EDE+GLLWKLP+LKS+ +GKLGPAFGLGVGCGVGF VGLVGGAGFGPGIPGL
Sbjct: 2   NRNRRDGGEDENGLLWKLPVLKSARLGKLGPAFGLGVGCGVGFGVGLVGGAGFGPGIPGL 61

Query: 90  QLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLH--GHQSIFSQDEIGAVVDEL 149
           Q GFG+GAGCG+GLGFGYGVGRGIAQDD+RRYSNVGDLLH  GHQSIFSQDEIGA+VDEL
Sbjct: 62  QFGFGLGAGCGVGLGFGYGVGRGIAQDDRRRYSNVGDLLHGQGHQSIFSQDEIGALVDEL 121

Query: 150 VLNTRKLIRATSKEIDKWKR 165
           V+NTR+LIRATS+EIDKW+R
Sbjct: 122 VVNTRRLIRATSREIDKWRR 141

[Close]
BLAST of Sed0022412 vs. TAIR 10
Match: AT4G10330.1 (glycine-rich protein )

HSP 1 Score: 159.5 bits (402), Expect = 2.4e-39
Identity = 81/134 (60.45%), Postives = 100/134 (74.63%), Query Frame = 0 

Query: 32  NRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQL 91
           NRR   +D+ GLLWKLP ++   IGK+GPAFGLGVGCG GF  GL+GG GFGPG+PGLQ 
Sbjct: 3   NRRRTGDDDKGLLWKLPQVRIRDIGKVGPAFGLGVGCGFGFGAGLIGGVGFGPGVPGLQF 62

Query: 92  GFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFSQDEIGAVVDELVLNT 151
           G G GAGCGIG+GFGYGVGRG A D  R Y NVG          S +E+ +++DELV++T
Sbjct: 63  GLGFGAGCGIGVGFGYGVGRGAAYDHSRSYYNVGKP--------SLNEVDSLIDELVVST 122

Query: 152 RKLIRATSKEIDKW 163
           +KL++AT+ EIDKW
Sbjct: 123 KKLVKATTNEIDKW 128

[Close]
BLAST of Sed0022412 vs. TAIR 10
Match: AT1G66820.1 (glycine-rich protein )

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-08
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 0 

Query: 47  LKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQ-----LGFGVGAGCGIGLG 106
           +K++T+   GP  G G+GCG G  +GL GG G G    GL      LGFG+G G G G G
Sbjct: 34  IKTTTV---GPGIGGGIGCGAGIGIGLSGGLGIGAS-EGLDHSNVVLGFGIGCGIGFGFG 93

Query: 107 FGYGVGRGIAQDD-KRRY 119
           +G+GVG G + DD K R+
Sbjct: 94  YGFGVGGGYSFDDIKERF 107

[Close]
BLAST of Sed0022412 vs. TAIR 10
Match: AT1G27695.1 (glycine-rich protein )

HSP 1 Score: 41.6 bits (96), Expect = 7.2e-04
Identity = 28/53 (52.83%), Postives = 32/53 (60.38%), Query Frame = 0 

Query: 55  LGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVG 108
           +G  FG GVGCG G       G GFG G+P   LG G G GCG+GLG G+G G
Sbjct: 9   VGVGFGFGVGCGFGV------GWGFG-GMPMNILGVGAGGGCGVGLGLGWGFG 54

[Close]
BLAST of Sed0022412 vs. TAIR 10
Match: AT1G27695.2 (glycine-rich protein )

HSP 1 Score: 41.6 bits (96), Expect = 7.2e-04
Identity = 28/53 (52.83%), Postives = 32/53 (60.38%), Query Frame = 0 

Query: 55  LGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVG 108
           +G  FG GVGCG G       G GFG G+P   LG G G GCG+GLG G+G G
Sbjct: 9   VGVGFGFGVGCGFGV------GWGFG-GMPMNILGVGAGGGCGVGLGLGWGFG 54

The following BLAST results are available for this feature:
BLAST of Sed0022412 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023521209.17.8e-6184.62fibroin heavy chain isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022974026.13.9e-6084.62keratin, type II cytoskeletal 3 isoform X2 [Cucurbita maxima][more]
XP_022932820.13.3e-5983.22keratin, type II cytoskeletal 2 epidermal isoform X2 [Cucurbita moschata][more]
XP_038889093.15.6e-5984.03ctenidin-1 isoform X1 [Benincasa hispida][more]
XP_023521208.15.6e-5983.33ATP-dependent RNA helicase glh-2 isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Sed0022412 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0022412 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IA951.9e-6084.62keratin, type II cytoskeletal 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1F3601.6e-5983.22keratin, type II cytoskeletal 2 epidermal isoform X2 OS=Cucurbita moschata OX=36... [more]
A0A6J1ICW21.3e-5883.33keratin, type II cytoskeletal 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A1S4E3472.3e-5882.64glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103498... [more]
A0A6J1DP593.0e-5885.00glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of Sed0022412 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G10330.12.4e-3960.45glycine-rich protein [more]
AT1G66820.16.3e-0846.15glycine-rich protein [more]
AT1G27695.17.2e-0452.83glycine-rich protein [more]
AT1G27695.27.2e-0452.83glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34201:SF1GLYCINE-RICH PROTEINcoord: 157..188
NoneNo IPR availablePANTHERPTHR34201GLYCINE-RICH PROTEINcoord: 157..188
NoneNo IPR availablePANTHERPTHR34201GLYCINE-RICH PROTEINcoord: 30..134
NoneNo IPR availablePANTHERPTHR34201:SF1GLYCINE-RICH PROTEINcoord: 30..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022412.1Sed0022412.1mRNA
Sed0022412.2Sed0022412.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004386 helicase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003724 RNA helicase activity