Sed0022338 (gene) Chayote v1

Overview


Name	Sed0022338
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like
Location	LG08: 35607368 .. 35611801 (+)
RNA-Seq Expression	Sed0022338
Synteny	Sed0022338

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTCTGAACAGAGCCTTTCAATCACACAGAGAGAGGCCATGGAAGCTGCAATTGGCGGTCGACTTCCTCTTTCACCCACCCATTTCTTCAATCCGGCCAGCCCAGGTATTCTAAACTTCTACCATTTTGCGCCTCTTCATTTTCTTTGTAAATCAATTTGCCTCTAAATTCTTTCGGCTGAGATTTCTGTGTCCTTAATCCTAATCTACAGGAAATGTTTTTTTTTTTTTTTGAGAAATTATTGTTCGTTGTTGAATGTTTACATGATTTCTGGCATTGTGGAGGTAGAAACTGCGTGTCATGTGCTTGTAGAATGATAATTTTCTTGTTTGGATGAATTTTAGTTTTCTAGAAGTGGGAAATTAAACCCTTGAAGAATTAAGAGGTGATGATTTTTAACTATAATTAATTTGGTATGAGTTTCCTTGTGGGATTGGTGGTATGTCATGCGATAATAGTTGAGGTGCCGCAAGTTAGCCTGGACAATGATGAATAAGAGGGAAATGAAGTGTTGCATTATTGGGAAAGCTACCAATGGAACGAAATTGAAATTTAGTAAAATTTTGTTTGTATGTGTGACATGAGTATATATATGTTGAAAAGGAGTACTCGAGATTCATGTAACTATTCTCTAACTTTTCATTGAGTGTCATTAAGATAGAGGAAACCGAATGGGTTAGTGGTGCAATGGTTTCATTGTTTGGTTGTAAATCAGTTCAACACCAGCGTCACAGGTTCGATCCCAAAAATCGGTATTTGTCCCTGTCCTTCAATATGATTAATTCAGGTTTTGTGGATGCAACGGTACACCCTTATTAGGCCTGTCCTGCATTTTTTTTTTTTTTTTTGAAAAGTTTTACTTCATATCTGCAGGCTAAAAATTTAGGCCCTGGGATAACTATTTTGGTTTTTTGAAAATCGTGCTTGCTTTCTCTACTTTGAGCCATCTTTCTTAAAAGCATTTTAATTCTTGGTGTAATATTATGAAAACAAAAACTAGTTTCTGAAAACTATTTTTTAGTTTTCTAAACCTGACTTGGTTTTTGTAAAACGGTAAAAAGTAGATACAAATCAAGTATGCTTAGAGGTGATACTAGTATTTACAAACTTAACTTTCAAAAAATAGAAAAAAAAATCAAATATTTATCAAACGGGGTCTTATTAACCTACAATCTTAAGTCCCGTTTGATAACCATTTCGTTTTTTGTTTTTTGTTTTTCATTTTTGGTTTTTAGTTTTAAAAAATAAAAACAGATATGTTTGATAATTTATTTTAGTTTTATGTTTTTTAAAAACTAAAAATAAAAAAACATGTTTGATAACTTTTTTTTTGTTTTCAAACATCACATTTTGTTTTGGTTTTTTTAGTTTTTACTATTTATTCTTGATTTGTTCATACTTTTTTTAAAAAAAAAACAAAAAACTATTTGTAAAAGCAATTTTTTTTAGTTTTTAGAATTTCTTTAATATTTTTTAATTTTTAGAAACAAAATTTAAAACTGGTTATCAAAATGAAATGGTTATGAAACGGAGTCTTAATTATTTCATGGAGTTGAAAAGCATCCTAGAATTAGTGAGGTGGGTTACGAGCATAATGTGAGGAGTTAAACAACCCCGGTTATGAGAAAGAAAGAAACAATGACTAAACCTAGCATCTTGTAAATACTACATGCTTTCAACATTTTTATCATGGTGAATTAATATCTCAATATATAGGGATCAACATCAGATTAGCAAAAAAGCTCAATGACTAAGCAGTATTTTTAGAAGGAACGATCAAAACGAATAGGGGAAGTTGTAGTTTAGCTACCAACATAATAGCTCAACCATCTATTGATGGGAGTCCTGAGACAAATATATGAATTCCAGAATTTACTAGAACTGCTATGAGGATTGCTACTTGGCAAATAGTTTGTATATTATCCATGAAGGTCGTTTAAGCTCAAATTTCATACTGTTGTTGTTTATTTATAGTCTATTGATGACCTTGGTATTCTATCGATTTATTGATAATATGTACACTGGATCTTATACCTACACAACCTACAGTGCATTTAAGGCCTATGAAATTATGATGGATTAAACACTCATAAGAGATTTAAATGCTGAGTTTGGTGATTCTTTGAACAGCTGTAATATCATTTATAAACTTTTCAAAAGAAAAACTAGCTTGCGAAAATATTTGGTGAATCATCCTTTCTTTTACAACTGGGCGGGGCACAATTTGGTGAATCATCCAAATGGTTTTCTTCAAACGAAAAAGAGTTCGTTTGAAGAAGTAAAATTGCAAGGATATTGAGATCCTCTTTATATATGTGTGGGTACTAGTATGAGATAGGTGGGGGATTAGTAGAATATCAATAAGGGATGTAGTAGTAACTAGTAATTAGTTAGAGGTGCTGTGGTTATAAATAGAAGTCCTATAAATATGCATGTTTATACTCTCATATAAGTCACCATTGAAGGAAGTATTGTCGATATCAACCTATCTTACCTTCCAATTGTGAGAGACTGCAAGTCTTGGGATTTACTCAAATGGTAGATGGGTTTAATAACTTGAGTGAAATTGTGTATGAATTAAGGCCTCAATATTGGGGTAATCTTTTTGCTTCAAGTTGAGCCTTATATTTAGATATTGAGCCATTTGGATTTGTTTTTTACTCATAAAACCTATTTATTTCCGGCTCAAGTTTGGTCGAAAGTGGGTGGTACCAAGGTCCATGTCTTACTCTTTTAGAGCATTGTGCTCCACAACCATTGCTGATTGCCATTAAGGTAAGGGATATAGTATTAATTAGTTAGATGTGTCTATAGGAGTGTTAGGAACTTTAGAGGATGTAGATCATTTTATTGGAGTGTCCATTGTGGGACTTGGAAGAGATATCCCTCTCGAAAGGCTAGTGTTATATTTGTAATTCCTTTTTGATATTGCAATATCTTGATGTGTTTTTCTGTGTTTGGATACCTAATAATATACTTCTCAAAAAACCTTTAAATTTCTAGTTCAAGTTAAATATAATTGGCCTATTTGAAACGTTATAATCTAGAATCATCTTAGATAGCAAACTGATGGTGATTGTTAAATTTTACCTGTTCATAAACCGATAGTGTAAGAATTTAGAGTCTAGGTTGTATTTAGCTCAAAATTTCTTACTAAAACACATGGAGAAAAAAGGAACACTGAGGAGTGGATCCTGAGTCAGCTTTGGGCTTCAATTTTCATTACCATCGTACATTTTTTTTCAAGCAAAAGTGTTGTGGCTGTTTCTATATTGTTTGTTTGAACTTAGACTTTGAAGGTGTGCTCCCCTCAAGGTCTCAGGTTCGAGACTCGCCTGTGACATTAATTTGTGGACATCTCCCGTGTCTTCATTCCTTTGATGTCTCTCAGTGCCTGACTAAGGGACAAGCGTGGTTATCCCAGATTTTGTGGAATGAAACTCCAATTTCTCGGTTTCAAAAAAAAAATCAATATTCATTTGAACTTGCTTGACAATTGACATGTTTATACAGTGCTACCCATTGATTATTGTTATCTGTATCACAGGGGTCAAATACTATTGTTATAAACCAAGTAGAAACCGGAACATCTTAATGATGTTATCAGTTGCTGAGCTCGGAAAAGCTGGAGGGTTGGCAGAAAAGCCAACCATAGAGAAGACAACACCTGGTCGTGAATCTGAGTTTGATGTCAGGTACACAACAATTCTCCTCTGAATCTCACATATAAGCAACTAAAGATCTGTATGAATTAGATTATACTCAGGCAAAAAAAGAGCATAGTTTCAGTAACATGCTGTTTGGCCTAGTAACCAAGAGGTTACGGCCTAACGGCTTCAAAACCTCAGCCTAAATGTTATTGAATTAAAAAAAAAAAAAGAATTAGAGAAAGCTGAGCTTCCAAAATGATTTTGATCTTCAGGAAATCAAGGAAAACTTCTCCACCTTACCGAGTGTTGCTCCATAACGACAGTTACAATAAGCGAGAATATGTTGTGCAAGTTCTGATGAAGGTGATCCCCGGTATGACCGTCGACATTGCTGTCAACATAATGCAGGAGGCACATTACAATGGCATGTCGGTGGTAATTATCTGCGCCCAAGTTGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAGTGGTCTTCTGAGTTCAATTGAGCCTGCAAGTGATGGCTGTTGAATAGGAAAAATAGACTGTAATGTACTCTTTTGCCCCTTAGTTATCAGCCATATTAAAATTGCATGTTCTCAACTGCTACAATATTGCAAGTTGCACCTATGTACATAAGTAGAGATACTTTATAAAGAAATACACTTCAATTTACGAATACATATTCACTACCTATTCATCTGTGTCGATTTTGGGTACACTTGTTGCAGTTGTAGTTTGATCTTGTTCAATTGGATTGGATTCCTTCTTGTAGTTAGG

mRNA sequence

ATCTCTGAACAGAGCCTTTCAATCACACAGAGAGAGGCCATGGAAGCTGCAATTGGCGGTCGACTTCCTCTTTCACCCACCCATTTCTTCAATCCGGCCAGCCCAGGGGTCAAATACTATTGTTATAAACCAAGTAGAAACCGGAACATCTTAATGATGTTATCAGTTGCTGAGCTCGGAAAAGCTGGAGGGTTGGCAGAAAAGCCAACCATAGAGAAGACAACACCTGGTCGTGAATCTGAGTTTGATGTCAGGAAATCAAGGAAAACTTCTCCACCTTACCGAGTGTTGCTCCATAACGACAGTTACAATAAGCGAGAATATGTTGTGCAAGTTCTGATGAAGGTGATCCCCGGTATGACCGTCGACATTGCTGTCAACATAATGCAGGAGGCACATTACAATGGCATGTCGGTGGTAATTATCTGCGCCCAAGTTGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAGTGGTCTTCTGAGTTCAATTGAGCCTGCAAGTGATGGCTGTTGAATAGGAAAAATAGACTGTAATGTACTCTTTTGCCCCTTAGTTATCAGCCATATTAAAATTGCATGTTCTCAACTGCTACAATATTGCAAGTTGCACCTATGTACATAAGTAGAGATACTTTATAAAGAAATACACTTCAATTTACGAATACATATTCACTACCTATTCATCTGTGTCGATTTTGGGTACACTTGTTGCAGTTGTAGTTTGATCTTGTTCAATTGGATTGGATTCCTTCTTGTAGTTAGG

Coding sequence (CDS)

ATGGAAGCTGCAATTGGCGGTCGACTTCCTCTTTCACCCACCCATTTCTTCAATCCGGCCAGCCCAGGGGTCAAATACTATTGTTATAAACCAAGTAGAAACCGGAACATCTTAATGATGTTATCAGTTGCTGAGCTCGGAAAAGCTGGAGGGTTGGCAGAAAAGCCAACCATAGAGAAGACAACACCTGGTCGTGAATCTGAGTTTGATGTCAGGAAATCAAGGAAAACTTCTCCACCTTACCGAGTGTTGCTCCATAACGACAGTTACAATAAGCGAGAATATGTTGTGCAAGTTCTGATGAAGGTGATCCCCGGTATGACCGTCGACATTGCTGTCAACATAATGCAGGAGGCACATTACAATGGCATGTCGGTGGTAATTATCTGCGCCCAAGTTGATGCAGAAGATCACTGTATGCAGCTGAGAGGCAGTGGTCTTCTGAGTTCAATTGAGCCTGCAAGTGATGGCTGTTGA

Protein sequence

MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSVAELGKAGGLAEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC

Homology

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BLAST of Sed0022338 vs. NCBI nr
Match: XP_022136971.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 278.9 bits (712), Expect = 2.8e-71
Identity = 138/158 (87.34%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSVAELGKAGGLAEKPTIEK 60
           MEAAI GR+PLSP HFFN   PG KYY +K  RNR+ LMMLSVAELGK GGL EKPTIEK
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHND+YNKREYVVQVLMKVIPGMT+D AVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           YNGMSVVIICAQVDAEDHCMQLRG+GLLSSIEPASDGC
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0022338 vs. NCBI nr
Match: XP_038894047.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida] >XP_038894048.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-69
Identity = 135/158 (85.44%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSVAELGKAGGLAEKPTIEK 60
           MEAAI GR+ LSP HFF+   PG KYY +K  RNR++LMMLSVAELGK GGL EKPTIEK
Sbjct: 1   MEAAICGRVSLSPNHFFSSTKPGDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAH 120
           TTPGRESEFDVRK RKTSPPYRVLLHND+YNKREYVVQVLMKVIPGMT+D AVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKLRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRG+GLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0022338 vs. NCBI nr
Match: XP_008456997.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 4.4e-69
Identity = 134/158 (84.81%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSVAELGKAGGLAEKPTIEK 60
           MEAAI GR+PLSP  FF    PG KYY +K  RNR+ LMM+SVAELGK GGL EKPTIEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAH 120
           TTPGRESEFDVRKSRKTSPPYRVLLHND++NKREYVVQVLMKVIPGMT+D AVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRG+GLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0022338 vs. NCBI nr
Match: XP_022994956.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 270.8 bits (691), Expect = 7.5e-69
Identity = 135/158 (85.44%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSVAELGKAGGLAEKPTIEK 60
           MEAAI GRLPLSP HFFN   PG KYY +K  RNR+IL MLSVAELGK GGL EKPT EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAH 120
           TTPGRESEF+VRKSRK +PPYRVLLHND++NKREYVVQVLMKVIPGMTVD AVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRG+GLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0022338 vs. NCBI nr
Match: XP_004137466.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus] >KGN64109.1 hypothetical protein Csa_014084 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 1.7e-68
Identity = 133/158 (84.18%), Postives = 142/158 (89.87%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSVAELGKAGGLAEKPTIEK 60
           MEAAI GR+PLSP  FF    PG KYY +K  RNR+ LMM+SVAELGK GGL EKP IEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAH 120
           TTPGRESEFDVRKSRKTSPPYRVLLHND++NKREYVVQVLMKVIPGMT+D AVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRG+GLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0022338 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.2e-55
Identity = 110/159 (69.18%), Postives = 126/159 (79.25%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSV-AELGKAGGLAEKPTIE 60
           ME AI GRL L+P+  FN  S         P  NR+ILM LS  A LGK GG+ +KP IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KTTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEA 120
           KTTPGRESEFD+RKS+K +PPYRV+LHND++NKREYVVQVLMKVIPGMTVD AVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 121 HYNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           H NG++VVI+CAQ DAE HCMQLRG+GLLSS+EP   GC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Sed0022338 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.1e-20
Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 50  GGLAEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTV 109
           GG+ + PT   TT  ++    V +S+K  P Y+VLLHND+YNKREYVV+VL+KV+  +TV
Sbjct: 61  GGVMDAPT---TT--QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 110 DIAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           D AV  MQEAH  G+++V+ C Q +AE +C  LR +GL S+IEP   GC
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEPG--GC 162

[Close]

BLAST of Sed0022338 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 75  RKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAHYNGMSVVIICAQVD 134
           RK +P YRVLLHND +N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGSGLLSSIEP 154
           AE +C QL+  GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

[Close]

BLAST of Sed0022338 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 75  RKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAHYNGMSVVIICAQVD 134
           RK +P YRVLLHND +N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGSGL 148
           AE +C QL+  GL
Sbjct: 75  AEFYCEQLKSHGL 87

[Close]

BLAST of Sed0022338 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.1e-13
Identity = 44/102 (43.14%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 54  EKPTIEKTTPGRESEFD--VRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDI 113
           E PT    +PG  +  D    + RK SP Y+VLLHND  N  EYV+  L +V+P ++   
Sbjct: 4   ETPT---RSPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQD 63

Query: 114 AVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEP 154
           A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSIEP
Sbjct: 64  AMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

[Close]

BLAST of Sed0022338 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 138/158 (87.34%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSVAELGKAGGLAEKPTIEK 60
           MEAAI GR+PLSP HFFN   PG KYY +K  RNR+ LMMLSVAELGK GGL EKPTIEK
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHND+YNKREYVVQVLMKVIPGMT+D AVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           YNGMSVVIICAQVDAEDHCMQLRG+GLLSSIEPASDGC
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0022338 vs. ExPASy TrEMBL
Match: A0A1S3C561 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496767 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.1e-69
Identity = 134/158 (84.81%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSVAELGKAGGLAEKPTIEK 60
           MEAAI GR+PLSP  FF    PG KYY +K  RNR+ LMM+SVAELGK GGL EKPTIEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAH 120
           TTPGRESEFDVRKSRKTSPPYRVLLHND++NKREYVVQVLMKVIPGMT+D AVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRG+GLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0022338 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.6e-69
Identity = 135/158 (85.44%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSVAELGKAGGLAEKPTIEK 60
           MEAAI GRLPLSP HFFN   PG KYY +K  RNR+IL MLSVAELGK GGL EKPT EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAH 120
           TTPGRESEF+VRKSRK +PPYRVLLHND++NKREYVVQVLMKVIPGMTVD AVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRG+GLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0022338 vs. ExPASy TrEMBL
Match: A0A0A0LSY6 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.1e-69
Identity = 133/158 (84.18%), Postives = 142/158 (89.87%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSVAELGKAGGLAEKPTIEK 60
           MEAAI GR+PLSP  FF    PG KYY +K  RNR+ LMM+SVAELGK GGL EKP IEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAH 120
           TTPGRESEFDVRKSRKTSPPYRVLLHND++NKREYVVQVLMKVIPGMT+D AVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRG+GLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0022338 vs. ExPASy TrEMBL
Match: A0A6J1GS56 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457001 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.4e-68
Identity = 134/158 (84.81%), Postives = 142/158 (89.87%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSVAELGKAGGLAEKPTIEK 60
           MEAAI GRLPLSP HFFN   PG KYY +K  RNR+IL MLSVAELGK GGL EKP  EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEAH 120
           TTPGRESEF+VRKSRK +PPYRVLLHND++NKREYVVQVLMKVIPGMTVD AVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRG+GLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Sed0022338 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-56
Identity = 110/159 (69.18%), Postives = 126/159 (79.25%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSV-AELGKAGGLAEKPTIE 60
           ME AI GRL L+P+  FN  S         P  NR+ILM LS  A LGK GG+ +KP IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KTTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEA 120
           KTTPGRESEFD+RKS+K +PPYRV+LHND++NKREYVVQVLMKVIPGMTVD AVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 121 HYNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
           H NG++VVI+CAQ DAE HCMQLRG+GLLSS+EP   GC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Sed0022338 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 152.1 bits (383), Expect = 3.6e-37
Identity = 85/159 (53.46%), Postives = 98/159 (61.64%), Query Frame = 0


Query: 1   MEAAIGGRLPLSPTHFFNPASPGVKYYCYKPSRNRNILMMLSV-AELGKAGGLAEKPTIE 60
           ME AI GRL L+P+  FN  S         P  NR+ILM LS  A LGK GG+ +KP IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KTTPGRESEFDVRKSRKTSPPYRVLLHNDSYNKREYVVQVLMKVIPGMTVDIAVNIMQEA 120
           KTTPGRESEFD+RKS+K +PPYRV+LHND++NKREYVVQVLMK                 
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK----------------- 120

Query: 121 HYNGMSVVIICAQVDAEDHCMQLRGSGLLSSIEPASDGC 159
                         DAE HCMQLRG+GLLSS+EP   GC
Sbjct: 121 -------------ADAEQHCMQLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of Sed0022338 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136971.1	2.8e-71	87.34	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
XP_038894047.1	1.2e-69	85.44	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa ...	[more]
XP_008456997.1	4.4e-69	84.81	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_022994956.1	7.5e-69	85.44	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]
XP_004137466.1	1.7e-68	84.18	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]

BLAST of Sed0022338 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	2.2e-55	69.18	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	5.1e-20	51.38	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	1.2e-16	56.96	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	4.2e-14	54.79	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	6.1e-13	43.14	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of Sed0022338 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C511	1.3e-71	87.34	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A1S3C561	2.1e-69	84.81	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis ...	[more]
A0A6J1K0P0	3.6e-69	85.44	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A0A0LSY6	8.1e-69	84.18	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 S...	[more]
A0A6J1GS56	1.4e-68	84.81	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita mos...	[more]

BLAST of Sed0022338 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	1.6e-56	69.18	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	3.6e-37	53.46	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 75..153 e-value: 2.1E-20 score: 74.4
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 75..152
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 77..144 e-value: 2.9E-17 score: 62.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..73
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 1..158
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022338.1	Sed0022338.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity