Sed0022335 (gene) Chayote v1

Overview


Name	Sed0022335
Type	gene
Organism	Sechium edule (Chayote v1)
Description	zinc finger CCHC domain-containing protein 10
Location	LG09: 2245420 .. 2247830 (+)
RNA-Seq Expression	Sed0022335
Synteny	Sed0022335

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATATTTTCATCCATTCCAGATCGCCTCCTCATTCCGATCTTCATCTTCGATCTGCACGGTATGTTCTTACAGCGATTCTCTACATTTTGTACTGATTTCATGTGTTTAGTTACTTCAAACTTGGCCTAATTTCTCTCCATTTTTCCATTTTCCCATTTTCCCCTTTTTCTTACGAACCAGATGCATTACAAGTCGCCGTTCTATTTCGATTACGAATCCATGTTCTGTGATTATCTTCTTTAGGCTCAAATTTGATCTGATTTTCATCTATTTTTTTCGCCTTTTATGGTAACTCGTAGAAACCCTAATACTTCTTCAATTTTTGGTTCTTTGCTGTTTTTAGTTTAGTTGATATAATTAAATTTACCCCAATTTATAAGCATGATTTTTTAATTTGATGGGTGATTTAACATAATTCGAAGTAGCATAGAGTATGAAGTCCTACGTCGAGTTGTTTCATTTCTGAATTAATTTTTTCCTATGTTCAAATCCATAAGGGAGAGAAGTGTGTAGTTGATATAATTAAATTTACCTCATATTATAAGCTTAAGTTTTTGAGTTGAGGGGTGATTTAAAATGGGATGACGTGGTAGTCGAAGACTTGAGCTTTGAATGTGTGCTTCCTTTACGGTCTCGGTTCAAGACTCGCTTATGATATTAATTTGTTGACACATTTTGTGTCTCCTTTCCTTCAATGTCTCCCGGTGTTGGGACGAGCGTGGTTACTTCCGGAACAGTAGAATAGAACTTCAAATTTTCGGTTCCCAAAAAAAAATAATTATGTATCTCGCTAGGCTCACCAACCAACTTGGACTTTGATTTTGATTATTCTATCACAACCATAAGGATTGTTTTCTGGGGATCTTTTACGATCTTATTTTTTCCATTTATTTTTTTCCGTTTGGGTATCTTTACATTCACATTTTGAAGTCACATGTTCTTGTGTTCTCAAAGGGTGGGCAGAGTGGTTGAAGACTTGAGCTTTGAAGGTATGCTCCCCTCAAGGTCTTAGGTTCGAGACTCAACTGTGACATTCATCCTTTGATGTCTTCCGGTGCTTGGCCTGGGGACGGGCGTGGTTACCCTTGTTTCAAAAAAAAAAAAAAAGTCACATGTTCTTGTAAGAAGGAAAGCTGATGCTTTAGCCTTTGTTTTTATGTTATCTTCTATTTTCATAATGTCTATTGGCTTTTAAATTTGGAGTTATGTTGCGATCTTATTCTTAGTTTTCCTTTTGTTCCTTACCAGTGTGTTTAGATTCAGACATTGAAACAAAAGAATGTCTAGTAAGAAGGAAGAGAAGTCGCAGGCGGCGGCCGAAAAGATCAAGGCTGCAACTCTTACGGCTGCAAAAGGCCTTAGTCGAGCACAGGCCGAACGAGCAGCTACGGCAGCTGCTCGGAATGTGAATGCTTATGGGCAGAAGGAAGAAGGCCCGAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAAGCAGTCAGATTGGGTGTAAGAAAGGACCTTAAGGCCTCTATGTCTAGTGCTGGTGGAGCTGCTGCACAATGCCAGAAATGTTATCAGCTGGGACACTGGACATACGAATGCAAAAACGATCGCGTTTACATATCCCGACCATCTCGAACTCAACAACTGAAAAATCCCAAGTTGAGGATGAAGATGGCAGCCTCATATGAGTTGGACAACCCAGATTCCGATGAGGAGAAGAAAACTGAAAAGCATTCGAAGAAGAAAAGCAAACGAAAGCATCGGTCCAATGCGAAATCTGACAGCGATAGTGAGGCCTCTGTTTTTGAGACTGATAGTGGGTCATCATCAGCTTCTGGATCTGATGATTCTTCAGAAGAAAGCAGTTCTTCATCTGAATCAGAAGCAGAAAGGAGAAGGAGAAGAAAAAAGAAGCAAAAGAGGGGCAGAAGAAAGAGGAGGTCTAGCTCATCTTCTGAATCTTCTGATTCGGACTCGGGTTCTGAATCAGAATCTGATTCTGAAGATGAACGTATTAGGAGGAGAAGCCGAAGGCACAGCAGAAGGCGCTAGGAGAATCGACCTAATTGGAGTGAATTACGGGTCAATATATTTGCAACTATTGTCAGTCTAGAGATTTGGATTCATTTAGTTTCTTGTTATTAGTTGTTCAACCTAAACCAAGGACACTCTGAAATTTGCATTGTGTACAACTGAATCATGAGCATTTTGTTCTTGTTTTCATCTTATTGAGCTTAGCAATCTTCTCCCTTTACACTCTTCTTATGAATGTATAAATGATTGACATCTTTGTGGCACTCGCCCCTTGGCCACCTCTCTTTTTTCAGACTTCAGATCTTAAGGAATATTGTTTGTGTTTTACTTCTAATAATAAAAGATCTCTCTTTTTTAGATTGTTCA

mRNA sequence

GATATTTTCATCCATTCCAGATCGCCTCCTCATTCCGATCTTCATCTTCGATCTGCACGTGTGTTTAGATTCAGACATTGAAACAAAAGAATGTCTAGTAAGAAGGAAGAGAAGTCGCAGGCGGCGGCCGAAAAGATCAAGGCTGCAACTCTTACGGCTGCAAAAGGCCTTAGTCGAGCACAGGCCGAACGAGCAGCTACGGCAGCTGCTCGGAATGTGAATGCTTATGGGCAGAAGGAAGAAGGCCCGAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAAGCAGTCAGATTGGGTGTAAGAAAGGACCTTAAGGCCTCTATGTCTAGTGCTGGTGGAGCTGCTGCACAATGCCAGAAATGTTATCAGCTGGGACACTGGACATACGAATGCAAAAACGATCGCGTTTACATATCCCGACCATCTCGAACTCAACAACTGAAAAATCCCAAGTTGAGGATGAAGATGGCAGCCTCATATGAGTTGGACAACCCAGATTCCGATGAGGAGAAGAAAACTGAAAAGCATTCGAAGAAGAAAAGCAAACGAAAGCATCGGTCCAATGCGAAATCTGACAGCGATAGTGAGGCCTCTGTTTTTGAGACTGATAGTGGGTCATCATCAGCTTCTGGATCTGATGATTCTTCAGAAGAAAGCAGTTCTTCATCTGAATCAGAAGCAGAAAGGAGAAGGAGAAGAAAAAAGAAGCAAAAGAGGGGCAGAAGAAAGAGGAGGTCTAGCTCATCTTCTGAATCTTCTGATTCGGACTCGGGTTCTGAATCAGAATCTGATTCTGAAGATGAACGTATTAGGAGGAGAAGCCGAAGGCACAGCAGAAGGCGCTAGGAGAATCGACCTAATTGGAGTGAATTACGGGTCAATATATTTGCAACTATTGTCAGTCTAGAGATTTGGATTCATTTAGTTTCTTGTTATTAGTTGTTCAACCTAAACCAAGGACACTCTGAAATTTGCATTGTGTACAACTGAATCATGAGCATTTTGTTCTTGTTTTCATCTTATTGAGCTTAGCAATCTTCTCCCTTTACACTCTTCTTATGAATGTATAAATGATTGACATCTTTGTGGCACTCGCCCCTTGGCCACCTCTCTTTTTTCAGACTTCAGATCTTAAGGAATATTGTTTGTGTTTTACTTCTAATAATAAAAGATCTCTCTTTTTTAGATTGTTCA

Coding sequence (CDS)

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAGGCGGCGGCCGAAAAGATCAAGGCTGCAACTCTTACGGCTGCAAAAGGCCTTAGTCGAGCACAGGCCGAACGAGCAGCTACGGCAGCTGCTCGGAATGTGAATGCTTATGGGCAGAAGGAAGAAGGCCCGAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAAGCAGTCAGATTGGGTGTAAGAAAGGACCTTAAGGCCTCTATGTCTAGTGCTGGTGGAGCTGCTGCACAATGCCAGAAATGTTATCAGCTGGGACACTGGACATACGAATGCAAAAACGATCGCGTTTACATATCCCGACCATCTCGAACTCAACAACTGAAAAATCCCAAGTTGAGGATGAAGATGGCAGCCTCATATGAGTTGGACAACCCAGATTCCGATGAGGAGAAGAAAACTGAAAAGCATTCGAAGAAGAAAAGCAAACGAAAGCATCGGTCCAATGCGAAATCTGACAGCGATAGTGAGGCCTCTGTTTTTGAGACTGATAGTGGGTCATCATCAGCTTCTGGATCTGATGATTCTTCAGAAGAAAGCAGTTCTTCATCTGAATCAGAAGCAGAAAGGAGAAGGAGAAGAAAAAAGAAGCAAAAGAGGGGCAGAAGAAAGAGGAGGTCTAGCTCATCTTCTGAATCTTCTGATTCGGACTCGGGTTCTGAATCAGAATCTGATTCTGAAGATGAACGTATTAGGAGGAGAAGCCGAAGGCACAGCAGAAGGCGCTAG

Protein sequence

MSSKKEEKSQAAAEKIKAATLTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVRLGVRKDLKASMSSAGGAAAQCQKCYQLGHWTYECKNDRVYISRPSRTQQLKNPKLRMKMAASYELDNPDSDEEKKTEKHSKKKSKRKHRSNAKSDSDSEASVFETDSGSSSASGSDDSSEESSSSSESEAERRRRRKKKQKRGRRKRRSSSSSESSDSDSGSESESDSEDERIRRRSRRHSRRR

Homology

[Close]

BLAST of Sed0022335 vs. NCBI nr
Match: XP_022138805.1 (zinc finger CCHC domain-containing protein 10 [Momordica charantia])

HSP 1 Score: 370.9 bits (951), Expect = 8.8e-99
Identity = 236/266 (88.72%), Postives = 249/266 (93.61%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAEKIKAATLTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAE+IKAA L+AAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGVRKDLKASMSSAGGAAAQCQKCYQLGHWTYECKNDRVYISRP 120
           EAKRQMYLMSTEKAVRLG RKDLKASMSSAGGAAAQCQKCYQ+GHWTYECKN+RVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSAGGAAAQCQKCYQVGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAASYELDNPDS-DEEKKTEKHSKKKSKRKHRSNAKSDSDSEASVF 180
           SRTQQLKNPKLRMKM+ SYELDNPDS  E+KKTEKHS KKSKRKHRSNAKS SDSEASVF
Sbjct: 121 SRTQQLKNPKLRMKMSESYELDNPDSGKEKKKTEKHS-KKSKRKHRSNAKSGSDSEASVF 180

Query: 181 ETDSGSSSASGSDDSSEES----SSSSESEAERR-RRRKKKQKRGRRKRRSSSSSESSDS 240
           ETDSGSSS +GSDDSSE S    SSSSESE+ERR RRR+KKQK+GRRKRR SSSSESSDS
Sbjct: 181 ETDSGSSSVTGSDDSSEGSSSDYSSSSESESERRSRRRRKKQKKGRRKRRYSSSSESSDS 240

Query: 241 DSGSESESDSEDERIRRRSRRHSRRR 261
           DSGSESESDS+DER +R+SRRHSRRR
Sbjct: 241 DSGSESESDSDDERSKRKSRRHSRRR 265

[Close]

BLAST of Sed0022335 vs. NCBI nr
Match: XP_008460988.2 (PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis melo] >XP_008460989.1 PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis melo] >KAA0045615.1 zinc finger CCHC domain-containing protein 10 [Cucumis melo var. makuwa])

HSP 1 Score: 368.6 bits (945), Expect = 4.4e-98
Identity = 229/264 (86.74%), Postives = 242/264 (91.67%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAEKIKAATLTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAE+IKAA L+AAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGVRKDLKASMSSAGGAAAQCQKCYQLGHWTYECKNDRVYISRP 120
           EAKRQMYLMSTEKAVRLG RKD+K SMSSAGGAAAQCQKCYQ+GHWTYECKN+RVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAASYELDNPDSDEEKKTEKHSKKKSKRKHRSNAKSDSDSEASVFE 180
           SRTQQLKNPKLRMKM  S ELDNPD  EE+K +KHSK KSKRKHRSNAKSDSDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEEKPKKHSKNKSKRKHRSNAKSDSDSEASVFE 180

Query: 181 TDSGSSSASGSDDSSEES----SSSSESEAERRRRRKKKQKRGRRKRRSSSSSESSDSDS 240
           TDSGSSS + SDDSSEES    SSSSESE ER RRR+KKQKRGRRKRR SSSS+SSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESECERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDSEDERIRRRSRRHSRRR 261
            SESESDS++ER RR+SRRHSRRR
Sbjct: 241 RSESESDSDNERSRRKSRRHSRRR 264

[Close]

BLAST of Sed0022335 vs. NCBI nr
Match: XP_011649249.1 (zinc finger CCHC domain-containing protein 10 [Cucumis sativus] >KGN61833.1 hypothetical protein Csa_006617 [Cucumis sativus])

HSP 1 Score: 367.9 bits (943), Expect = 7.5e-98
Identity = 228/264 (86.36%), Postives = 243/264 (92.05%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAEKIKAATLTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAE+IKAA L+AAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGVRKDLKASMSSAGGAAAQCQKCYQLGHWTYECKNDRVYISRP 120
           EAKRQMYLMSTEKAVRLG RKD+K SMS AGGAAAQCQKCYQ+GHWTYECKN+RVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAASYELDNPDSDEEKKTEKHSKKKSKRKHRSNAKSDSDSEASVFE 180
           SRTQQLKNPKLRMKM  S ELDNPD  EEKK +KHSKKKSKRKHRSNAKS+SDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEKKPKKHSKKKSKRKHRSNAKSNSDSEASVFE 180

Query: 181 TDSGSSSASGSDDSSEES----SSSSESEAERRRRRKKKQKRGRRKRRSSSSSESSDSDS 240
           TDSGSSS + SDDSSEES    SSSSESE+ER RRR+KKQKRGRRKRR SSSS+SSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDSEDERIRRRSRRHSRRR 261
            SESESDS++ER RR+SRRHSR+R
Sbjct: 241 RSESESDSDNERSRRKSRRHSRKR 264

[Close]

BLAST of Sed0022335 vs. NCBI nr
Match: XP_022959515.1 (zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata])

HSP 1 Score: 362.8 bits (930), Expect = 2.4e-96
Identity = 231/268 (86.19%), Postives = 243/268 (90.67%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAEKIKAATLTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAE+IKAA L+AAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGVRKDLKASMSSAGGAAAQCQKCYQLGHWTYECKNDRVYISRP 120
           EAKRQMYLMSTEKAVRLG RKD+K SMSSAGGAAAQCQKCYQ GHWTYECKN+RVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAASYELDNPDS-DEEKKTEKHS-KKKSKRKHRSNAKSDSDSEASV 180
           SRTQQLKNPKLRMKMA S ELDNPDS DEEKKT+K   KKKSKRKHRS  KS+SDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSASGSDDSSEE------SSSSSESEAERRRRRKKKQKRGRRKRRSSSSSESS 240
           FETDSGSSS +GSDDSSEE      SSS SESE  RRRRR+KKQKRGRRKRR SSSS+SS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDSEDERIRRRSRRHSRRR 261
           DSDSGSESESDS+ ER RR+SRRHSR+R
Sbjct: 241 DSDSGSESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of Sed0022335 vs. NCBI nr
Match: KAG7013679.1 (Zinc finger CCHC domain-containing protein 10 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.8 bits (922), Expect = 2.0e-95
Identity = 230/268 (85.82%), Postives = 242/268 (90.30%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAEKIKAATLTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAE+IKAA L+AAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGVRKDLKASMSSAGGAAAQCQKCYQLGHWTYECKNDRVYISRP 120
           EAKRQMYLMSTEKAVRLG RKD+K SMSSAGGAAAQCQKCYQ GHWTYECKN+RVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAASYELDNPDS-DEEKKTEKHS-KKKSKRKHRSNAKSDSDSEASV 180
           SRTQQLKNPKLRMKMA S ELDNPDS DEEKKT+K   KKKSKRKHRS  KS+SDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSASGSDDSSEE------SSSSSESEAERRRRRKKKQKRGRRKRRSSSSSESS 240
           FETDSGSSS +GSDDSSEE      SSS SESE  RRRRR+KKQKRGRRKRR SSSS+SS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDSEDERIRRRSRRHSRRR 261
           DSDS SESESDS+ ER RR+SRRHSR+R
Sbjct: 241 DSDSESESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of Sed0022335 vs. ExPASy Swiss-Prot
Match: Q5EB97 (Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus OX=10116 GN=Zcchc10 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 9.1e-06
Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 0


Query: 96  QCQKCYQLGHWTYECKNDRVYISRPSRTQQLKNPKLRMKMAASYELDNPDSDEEKKTEKH 155
           +CQKC + GHWTYECK  R Y+ RPSRT +LK   L+ K     +    +++ E+KT   
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELKK-ALKEKENRLLQQSMGETNTERKT--- 81

Query: 156 SKKKSKRKHRSNAKSDSDSEASVFETDSGSSSASGSDDSSEESSSSSESEAERRRRRKKK 215
             KK +R     + S SDS AS   ++S +S++S S+DS  + S SS S +         
Sbjct: 82  --KKKRRPKSVTSTSSSDSSASESSSESETSASSSSEDSDADGSLSSSSSSSAYSSSSSS 141

Query: 216 QKRGRRKRRSSSSSESSDSDSGSESESDSEDERIRRR 253
                     S SS SS S S SES SD E  + R++
Sbjct: 142 SSSSSSSSSDSDSSSSSSSSSSSESSSDDEPPKKRKK 172

[Close]

BLAST of Sed0022335 vs. ExPASy Swiss-Prot
Match: Q8TBK6 (Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens OX=9606 GN=ZCCHC10 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.5e-05
Identity = 66/177 (37.29%), Postives = 91/177 (51.41%), Query Frame = 0


Query: 87  MSSAGGAAAQCQKCYQLGHWTYECKNDRVYISRPSRTQQLKNPKLRMKMAASYELDNPDS 146
           +S A     +CQKC + GHWTYEC   R Y+ RPSRT +LK   L+ K      L    S
Sbjct: 35  ISEANKQHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKK-ALKEK---ENRLLLQQS 94

Query: 147 DEEKKTEKHSKKKSKRKHRSNAKSDSDSEA--SVFETDSGSSSASGSDDSSEESSSSSES 206
             E   E+ +KKK  +   S++ S SDS A  S  E++  S+S+S  D  ++ESSSSS S
Sbjct: 95  IGETNVERKAKKKRSKSVTSSSSSSSDSSASDSSSESEETSTSSSSEDSDTDESSSSSSS 154

Query: 207 EAERRRRRKKKQKRGRRKRRSSSSSESSDSDSGSES------ESDSEDERIRRRSRR 256
            A                  +SSSS  SDSDS S S      +S S+DE  +++ ++
Sbjct: 155 SA---------------SSTTSSSSSDSDSDSSSSSSSSTSTDSSSDDEPPKKKKKK 192

[Close]

BLAST of Sed0022335 vs. ExPASy Swiss-Prot
Match: Q9CX48 (Zinc finger CCHC domain-containing protein 10 OS=Mus musculus OX=10090 GN=Zcchc10 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.5e-05
Identity = 60/160 (37.50%), Postives = 86/160 (53.75%), Query Frame = 0


Query: 96  QCQKCYQLGHWTYECKNDRVYISRPSRTQQLKNPKLRMKMAASYELDNPDSDEEKKTEKH 155
           +CQKC + GHWTYECK  R Y+ RPSRT +LK   L+ K          +++ EKK +  
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELKK-ALKEKENRLLLQSIGETNIEKKIK-- 81

Query: 156 SKKKSKRKHRSNAKSDSDSEASVFETDSGSSSASGSDDSSEESSSSSESEAERRRRRKKK 215
            KKK  +   S++ S SDS AS   ++S +S++S S+DS  + S SS S +         
Sbjct: 82  -KKKRSKSVTSSSTSSSDSSASESSSESETSASSSSEDSDSDESLSSSSSSSSSSACSSS 141

Query: 216 QKRGRRKRRSSSSSESSDSDSGSESESDSEDERIRRRSRR 256
                    S S S SS S S S SES S+DE  +++ ++
Sbjct: 142 SSSSSSSSSSDSDSSSSSSSSSSSSESSSDDEPQKKKKKK 177

[Close]

BLAST of Sed0022335 vs. ExPASy TrEMBL
Match: A0A6J1CAJ2 (zinc finger CCHC domain-containing protein 10 OS=Momordica charantia OX=3673 GN=LOC111009881 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 4.3e-99
Identity = 236/266 (88.72%), Postives = 249/266 (93.61%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAEKIKAATLTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAE+IKAA L+AAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGVRKDLKASMSSAGGAAAQCQKCYQLGHWTYECKNDRVYISRP 120
           EAKRQMYLMSTEKAVRLG RKDLKASMSSAGGAAAQCQKCYQ+GHWTYECKN+RVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSAGGAAAQCQKCYQVGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAASYELDNPDS-DEEKKTEKHSKKKSKRKHRSNAKSDSDSEASVF 180
           SRTQQLKNPKLRMKM+ SYELDNPDS  E+KKTEKHS KKSKRKHRSNAKS SDSEASVF
Sbjct: 121 SRTQQLKNPKLRMKMSESYELDNPDSGKEKKKTEKHS-KKSKRKHRSNAKSGSDSEASVF 180

Query: 181 ETDSGSSSASGSDDSSEES----SSSSESEAERR-RRRKKKQKRGRRKRRSSSSSESSDS 240
           ETDSGSSS +GSDDSSE S    SSSSESE+ERR RRR+KKQK+GRRKRR SSSSESSDS
Sbjct: 181 ETDSGSSSVTGSDDSSEGSSSDYSSSSESESERRSRRRRKKQKKGRRKRRYSSSSESSDS 240

Query: 241 DSGSESESDSEDERIRRRSRRHSRRR 261
           DSGSESESDS+DER +R+SRRHSRRR
Sbjct: 241 DSGSESESDSDDERSKRKSRRHSRRR 265

[Close]

BLAST of Sed0022335 vs. ExPASy TrEMBL
Match: A0A1S3CDQ2 (zinc finger CCHC domain-containing protein 10 OS=Cucumis melo OX=3656 GN=LOC103499707 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 2.1e-98
Identity = 229/264 (86.74%), Postives = 242/264 (91.67%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAEKIKAATLTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAE+IKAA L+AAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGVRKDLKASMSSAGGAAAQCQKCYQLGHWTYECKNDRVYISRP 120
           EAKRQMYLMSTEKAVRLG RKD+K SMSSAGGAAAQCQKCYQ+GHWTYECKN+RVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAASYELDNPDSDEEKKTEKHSKKKSKRKHRSNAKSDSDSEASVFE 180
           SRTQQLKNPKLRMKM  S ELDNPD  EE+K +KHSK KSKRKHRSNAKSDSDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEEKPKKHSKNKSKRKHRSNAKSDSDSEASVFE 180

Query: 181 TDSGSSSASGSDDSSEES----SSSSESEAERRRRRKKKQKRGRRKRRSSSSSESSDSDS 240
           TDSGSSS + SDDSSEES    SSSSESE ER RRR+KKQKRGRRKRR SSSS+SSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESECERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDSEDERIRRRSRRHSRRR 261
            SESESDS++ER RR+SRRHSRRR
Sbjct: 241 RSESESDSDNERSRRKSRRHSRRR 264

[Close]

BLAST of Sed0022335 vs. ExPASy TrEMBL
Match: A0A5A7TW64 (Zinc finger CCHC domain-containing protein 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001260 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 2.1e-98
Identity = 229/264 (86.74%), Postives = 242/264 (91.67%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAEKIKAATLTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAE+IKAA L+AAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGVRKDLKASMSSAGGAAAQCQKCYQLGHWTYECKNDRVYISRP 120
           EAKRQMYLMSTEKAVRLG RKD+K SMSSAGGAAAQCQKCYQ+GHWTYECKN+RVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAASYELDNPDSDEEKKTEKHSKKKSKRKHRSNAKSDSDSEASVFE 180
           SRTQQLKNPKLRMKM  S ELDNPD  EE+K +KHSK KSKRKHRSNAKSDSDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEEKPKKHSKNKSKRKHRSNAKSDSDSEASVFE 180

Query: 181 TDSGSSSASGSDDSSEES----SSSSESEAERRRRRKKKQKRGRRKRRSSSSSESSDSDS 240
           TDSGSSS + SDDSSEES    SSSSESE ER RRR+KKQKRGRRKRR SSSS+SSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESECERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDSEDERIRRRSRRHSRRR 261
            SESESDS++ER RR+SRRHSRRR
Sbjct: 241 RSESESDSDNERSRRKSRRHSRRR 264

[Close]

BLAST of Sed0022335 vs. ExPASy TrEMBL
Match: A0A0A0LJ33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249870 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.6e-98
Identity = 228/264 (86.36%), Postives = 243/264 (92.05%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAEKIKAATLTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAE+IKAA L+AAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGVRKDLKASMSSAGGAAAQCQKCYQLGHWTYECKNDRVYISRP 120
           EAKRQMYLMSTEKAVRLG RKD+K SMS AGGAAAQCQKCYQ+GHWTYECKN+RVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAASYELDNPDSDEEKKTEKHSKKKSKRKHRSNAKSDSDSEASVFE 180
           SRTQQLKNPKLRMKM  S ELDNPD  EEKK +KHSKKKSKRKHRSNAKS+SDSEASVFE
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEKKPKKHSKKKSKRKHRSNAKSNSDSEASVFE 180

Query: 181 TDSGSSSASGSDDSSEES----SSSSESEAERRRRRKKKQKRGRRKRRSSSSSESSDSDS 240
           TDSGSSS + SDDSSEES    SSSSESE+ER RRR+KKQKRGRRKRR SSSS+SSDSDS
Sbjct: 181 TDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDS 240

Query: 241 GSESESDSEDERIRRRSRRHSRRR 261
            SESESDS++ER RR+SRRHSR+R
Sbjct: 241 RSESESDSDNERSRRKSRRHSRKR 264

[Close]

BLAST of Sed0022335 vs. ExPASy TrEMBL
Match: A0A6J1H6H5 (zinc finger CCHC domain-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111460472 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 1.2e-96
Identity = 231/268 (86.19%), Postives = 243/268 (90.67%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAEKIKAATLTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAE+IKAA L+AAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGVRKDLKASMSSAGGAAAQCQKCYQLGHWTYECKNDRVYISRP 120
           EAKRQMYLMSTEKAVRLG RKD+K SMSSAGGAAAQCQKCYQ GHWTYECKN+RVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAASYELDNPDS-DEEKKTEKHS-KKKSKRKHRSNAKSDSDSEASV 180
           SRTQQLKNPKLRMKMA S ELDNPDS DEEKKT+K   KKKSKRKHRS  KS+SDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSASGSDDSSEE------SSSSSESEAERRRRRKKKQKRGRRKRRSSSSSESS 240
           FETDSGSSS +GSDDSSEE      SSS SESE  RRRRR+KKQKRGRRKRR SSSS+SS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDSEDERIRRRSRRHSRRR 261
           DSDSGSESESDS+ ER RR+SRRHSR+R
Sbjct: 241 DSDSGSESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of Sed0022335 vs. TAIR 10
Match: AT5G49400.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 263.1 bits (671), Expect = 2.4e-70
Identity = 185/280 (66.07%), Postives = 216/280 (77.14%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAEKIKAATLTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MS+ K+EKSQ AA++IKAATLTAAKGLSR QAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSNSKDEKSQDAADRIKAATLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGVRKDLKASMSSAG---GAAAQCQKCYQLGHWTYECKNDRVYI 120
           E KRQMYLMSTEKAVRLG RKD   S S+ G    AA+QCQKC+Q GHWTYECKN+RVYI
Sbjct: 61  ELKRQMYLMSTEKAVRLGERKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYI 120

Query: 121 SRPSRTQQLKNPKLRMKMAASYELDNPDSDEEK----------KTEKHSKKKSKRKHRSN 180
           SRPSRTQQLKNPKLR K +   +LD  D D+E+          + EK S KKSKRKHRS 
Sbjct: 121 SRPSRTQQLKNPKLRTKPSVD-DLDGSDDDDEEERPDATNGKAEVEKRS-KKSKRKHRSK 180

Query: 181 AKSDSDSEASVFETDSGSSSASGSDDSSEESSSSSESEAERRRRR-------KKKQKRGR 240
           + S+SDSEASVFETDS  SS     +SS E SSSS+SE ERRRRR       K+KQ++ R
Sbjct: 181 SDSESDSEASVFETDSDGSSG----ESSSEYSSSSDSEDERRRRRKAKKSKKKQKQRKER 240

Query: 241 RKRRSSSSSESSDSDSGSESESDSEDERIRRRSRRHSRRR 261
           R+R SSSSSESS+S+S S+S+SD +  R +++S+RHS +R
Sbjct: 241 RRRYSSSSSESSESESASDSDSDEDRSRRKKKSKRHSNKR 274

The following BLAST results are available for this feature:

BLAST of Sed0022335 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138805.1	8.8e-99	88.72	zinc finger CCHC domain-containing protein 10 [Momordica charantia]	[more]
XP_008460988.2	4.4e-98	86.74	PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis melo] >XP_0084...	[more]
XP_011649249.1	7.5e-98	86.36	zinc finger CCHC domain-containing protein 10 [Cucumis sativus] >KGN61833.1 hypo...	[more]
XP_022959515.1	2.4e-96	86.19	zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata]	[more]
KAG7013679.1	2.0e-95	85.82	Zinc finger CCHC domain-containing protein 10 [Cucurbita argyrosperma subsp. arg...	[more]

BLAST of Sed0022335 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EB97	9.1e-06	37.58	Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus OX=10116 GN=Z...	[more]
Q8TBK6	3.5e-05	37.29	Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens OX=9606 GN=ZCCHC10...	[more]
Q9CX48	3.5e-05	37.50	Zinc finger CCHC domain-containing protein 10 OS=Mus musculus OX=10090 GN=Zcchc1...	[more]

BLAST of Sed0022335 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CAJ2	4.3e-99	88.72	zinc finger CCHC domain-containing protein 10 OS=Momordica charantia OX=3673 GN=...	[more]
A0A1S3CDQ2	2.1e-98	86.74	zinc finger CCHC domain-containing protein 10 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5A7TW64	2.1e-98	86.74	Zinc finger CCHC domain-containing protein 10 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A0A0LJ33	3.6e-98	86.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249870 PE=4 SV=1	[more]
A0A6J1H6H5	1.2e-96	86.19	zinc finger CCHC domain-containing protein 10-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of Sed0022335 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49400.1	2.4e-70	66.07	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13917	zf-CCHC_3	coord: 92..129 e-value: 1.7E-19 score: 69.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..260
IPR039715	Zinc finger CCHC domain-containing protein 10	PANTHER	PTHR13491	ZCCHC10 PROTEIN	coord: 1..244
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 91..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022335.3	Sed0022335.3	mRNA
Sed0022335.1	Sed0022335.1	mRNA
Sed0022335.2	Sed0022335.2	mRNA
Sed0022335.4	Sed0022335.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding