Sed0022313 (gene) Chayote v1

Overview
NameSed0022313
Typegene
OrganismSechium edule (Chayote v1)
Descriptionprotein CURVATURE THYLAKOID 1C, chloroplastic
LocationLG07: 11249388 .. 11252847 (-)
RNA-Seq ExpressionSed0022313
SyntenySed0022313
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCGTACTTGAAAAAAAAGTACAGGTTCGTCAATCCGAAACGATGAATTCCTATTGATTTGATAATTTCGGCTTAATTTTTGATTTGGGATTATAAATGTGCACTCAAAGTTCATTCATTTCCCATCCATTTCACTAATCATGGCTTCCATTGTTGCTACTCTTCCTCCGCCATTGTTGAGCCCCGCCAAAAGCTTCACCCTTCTCAATACTTCTCACAAGCTCTCTGTTTTTCCCATTATTGCAAGTAAGTTCATCTCTCCAATAGAGTTCCTATTTAGTCCGTTCGATCGTGTTTATTGAGCTCCATTTCTCCATGTTTATTTAGTTTGATTTTTGTTAGCGTAGTTTTTAGACATGGCCTTGAAATTATGGAAGTTGGGAAAAGGGTGTAGGTTTATAGGTTTGAAACTTTGGAATCTTACAGAGTTTTGTATAATTGATGGTTGATGTTGAAGGGTTGAAAAACAATTTGAATTTTTGAAGATTCACATTGGAAAGAGGGAGAAACCTCCAACATTAATAAGATAGGGGATTACTCATCTTAAATAATCTAATATGATATCGAAACTTATTAAATAAAAAAATGAAAGAATAAACCGACTTAGAAAAAAAGAACCACGGGAAAGGAGTGATGACATTAGATTTTGTAATTGTGCCTATCAAAATGTAGCCTTCAACACGACCTTACTTGAACAAGATCTTTTCTATAGATTGTACTATGGTGTCTTTGAGTTCTAAGGAGATAAGAACCTAAGTCTGTTGGATTAACCACTGCTTTGCGACTAGAAACGGCTTACGGGCTCAACTCCTGAAGCTGTAGATGATCGTTCTCGGCAGACTTGCCCTGTTGGGATGGTCGTAAGGAAGTCTGACAGACTTCTAAGTTCTAACAATTTAAAAAATATAGCCTCCACCACAACTTTCTCTTCCTAATGAATTTCTTCTTTTCTCTAAAATGGTTTCTCTCCTCATTCCAAATTACACTAAATAGGAACGAATGTAAATAATAAAGGGCTTAGAAGGAATGAGTTCGAGCTGGTTATCAACTTGAGAATATTTAATATTTTACAAGTTTCATTGACAACAAAATACCATAAGGTCATTGGTACGTTCTTTAGCAAGGGATATATAGTAATTATTCTAAGGAGTTAGTTAGAGCTTTGGTTATAAATAGAGTGGAAGAAAATGGAGAAGGTAGGCAATATTTTGGTGAATGGTTTAGGGCTTGAGAGAATGTTCTCAAGAGAGAGGGTCTAACCATTTTATATTTCAGTCTAGATTGGTTCATATCAGTCGTGTCTGTAAGAACTTTACAAGTTGGCATGAATATCAAGAAGAGAGGTAAAAAATACTCTGTATTATGTATGTTGTTCTGGCATACCTGTTTGATTGTGTGCAACTAATTGAAGCTCTCCTCATCTCGTTTATCATACCACTTATTATGAGTACATAATTCTTCAAAACCGCAGAGGGGCCTTCTGCCAATGTTCTTGTAAAGGCTATTGGGGACAGCTCTGGGTCTTCTACTTCCATCAATATTATTAAGTCTGTTCAAAATGTTGTAAGATCTTTCTTTCTTTTTTAAGCCTTCTTCTACAGTTTTAAGTTTTCCTTTCATATGGCTGTTTGATTGAAACCATCCTGGGATGATTTGGTCGTCAAATAAGGACATTGTATATGACAAAATGTTTAGAGATTATGAGTTCAATCCATAGTAGATATGTAACTAAAAATTAATGAATTAATTACCTTGACAACCAAGTAGGATCGGACAATTGTTCTATGAAAACGTTGAGGTGTGCACAAGCAAGCCCAAACACTCACAAAAAAAATATATTTAAAAATGTACATATTAGAGATCCTTACTTTATCTCACATTGAAAAGTTGAGGAGCTCTCAAAACCATATAAATATGTGAGCTACTCTCCTATCACCAACTGATTCTGAGGTAGAACTCCACTGTATTTAATATGGTACCAGAATATGATCCATAAATTCGGGTCCGACCCAAGTGGGTAAAACTAAGCGGGTATTTGAACCATAATTCGGATCCAATTCAAGCGCTTAAAGCTTAAGCTGGTATTTTATCCCAAACTTTGAATCCAGTCCAAGTGTGTATTTGATTCCTTTGTTTAAGTGATGTTTTCTTGTTTTTTTTGAAACAAGGGTAATCACGCCCATCCCTAAACCAAACACCAAGTGACATCGAAGGAATAATGTGTGAGTCTTGAACCTGGGACCTTGAAGGGAGCATACCTTCAAAACCCAAGTCTTAAACCACTGTGTCACCTCTTGGGGATGTGATGTTTTCTTGTTGAGGAAAGAATACTAGAAAACCGTGGCGATTCTTTCCTCCAAATTTATTGGTTCTCTTTTGTTACAATTAGCAAATTTCTCATTCTATAGGAAGTAAAATTTCACCTTAATCTTACAAGTATCTGTATCTTTCTGGCTAACTTGAGACAGTGGGATCAACCTGAAGATCGAATTGCACTTGTTGGTCTGGGATTAGCAGCTGTAGCTGGCGTATGGACAGCAACAAATCTTATTACGGTAATTGAAAAACAATGACCCACTTAGACAAAGGAGTCATTCTTTTTGCTTTGTTCCTTTCATCTTCAATGCATTAACTTGTTCGTTCTCAATTGCGTGTAGGCTATTGACAAGCTACCACTGCTTCCAGGTGTTTTAGAATTAATAGGAATACTGGTTTCTTCGGTAAGTAACAAGAAATCTCAGAACTTCATTATGCCATTTGGCAAGCTTGAACTCTGAAGCCATGGTTTTCCCTGGAAAATTCTATTGCTGACCCATGTTTCTGTTCTCCCCTGTCAATTCCAGTGGTTCGTGTATCGTTACCTCTTGTTCAAACCAAACCGGTACGTCGAAATTCATTAGATTTTTCACTTGGTTCACATGTGAAGGCCTCTCAGACCTGTATTTTCTACATATTTGTTGAATTATGTTAAATCATCGATCAACCTAAAAGTTTAAGCAGATGGATTAGCAAAAAATTTTGAACTGGCTTCTCTATCATTCACTGTAGGGGAGAGCTTTTGGAGATAATCAACAAGTCAGTAGCTGATGTATTGGGACAGTAAGTTGTTCTTGTTGTTAAAGGCCCTATTTGGTCCAAACTGGCTTCTCTATCATTCACTGCTGGTTGGTTTCTGAAATTTATTCAACAGTCCAGTGTGAATTGTAACCAAGATTGGTGTTTGATTCATCAATGCATTCCAATGTGAAATCTTCAATCCTTTAGTTTATGCATATATCGGTTTATGTTCAAAATTTTCTGTTATATTGGCTGTCTGAATCAGCTTACACAAACTTCAACTATTCTCTCAAAACAACCTGTCTGAACGTGCAACATTTGGATGTCAAAGAATTATGTAAGACATTAATTCTTACATATGTCATGACCATGAATTGATCTCATAACCTTTTGATTTCTCAA

mRNA sequence

GTTCGTACTTGAAAAAAAAGTACAGGTTCGTCAATCCGAAACGATGAATTCCTATTGATTTGATAATTTCGGCTTAATTTTTGATTTGGGATTATAAATGTGCACTCAAAGTTCATTCATTTCCCATCCATTTCACTAATCATGGCTTCCATTGTTGCTACTCTTCCTCCGCCATTGTTGAGCCCCGCCAAAAGCTTCACCCTTCTCAATACTTCTCACAAGCTCTCTGTTTTTCCCATTATTGCAAAGGGGCCTTCTGCCAATGTTCTTGTAAAGGCTATTGGGGACAGCTCTGGGTCTTCTACTTCCATCAATATTATTAAGTCTGTTCAAAATGTTTGGGATCAACCTGAAGATCGAATTGCACTTGTTGGTCTGGGATTAGCAGCTGTAGCTGGCGTATGGACAGCAACAAATCTTATTACGGCTATTGACAAGCTACCACTGCTTCCAGGTGTTTTAGAATTAATAGGAATACTGGTTTCTTCGTGGTTCGTGTATCGTTACCTCTTGTTCAAACCAAACCGGGGAGAGCTTTTGGAGATAATCAACAAGTCAGTAGCTGATGTATTGGGACAGTAAGTTGTTCTTGTTGTTAAAGGCCCTATTTGGTCCAAACTGGCTTCTCTATCATTCACTGCTGGTTGGTTTCTGAAATTTATTCAACAGTCCAGTGTGAATTGTAACCAAGATTGGTGTTTGATTCATCAATGCATTCCAATGTGAAATCTTCAATCCTTTAGTTTATGCATATATCGGTTTATGTTCAAAATTTTCTGTTATATTGGCTGTCTGAATCAGCTTACACAAACTTCAACTATTCTCTCAAAACAACCTGTCTGAACGTGCAACATTTGGATGTCAAAGAATTATGTAAGACATTAATTCTTACATATGTCATGACCATGAATTGATCTCATAACCTTTTGATTTCTCAA

Coding sequence (CDS)

ATGGCTTCCATTGTTGCTACTCTTCCTCCGCCATTGTTGAGCCCCGCCAAAAGCTTCACCCTTCTCAATACTTCTCACAAGCTCTCTGTTTTTCCCATTATTGCAAAGGGGCCTTCTGCCAATGTTCTTGTAAAGGCTATTGGGGACAGCTCTGGGTCTTCTACTTCCATCAATATTATTAAGTCTGTTCAAAATGTTTGGGATCAACCTGAAGATCGAATTGCACTTGTTGGTCTGGGATTAGCAGCTGTAGCTGGCGTATGGACAGCAACAAATCTTATTACGGCTATTGACAAGCTACCACTGCTTCCAGGTGTTTTAGAATTAATAGGAATACTGGTTTCTTCGTGGTTCGTGTATCGTTACCTCTTGTTCAAACCAAACCGGGGAGAGCTTTTGGAGATAATCAACAAGTCAGTAGCTGATGTATTGGGACAGTAA

Protein sequence

MASIVATLPPPLLSPAKSFTLLNTSHKLSVFPIIAKGPSANVLVKAIGDSSGSSTSINIIKSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFVYRYLLFKPNRGELLEIINKSVADVLGQ
Homology
BLAST of Sed0022313 vs. NCBI nr
Match: XP_023000405.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima] >XP_023000406.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima])

HSP 1 Score: 221.9 bits (564), Expect = 3.7e-54
Identity = 117/146 (80.14%), Postives = 127/146 (86.99%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKSFTLLNTSHKLSVFPIIAKGPSANVLVKAIGDSSGSSTSINII 60
           MASI ATLPPPLL+P KSF  L T  K++VFP IAKG SAN +VKAIGDSS SSTSI+II
Sbjct: 1   MASIFATLPPPLLAPGKSFNPLFTYQKITVFP-IAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFVY 120
           KSV+NVWDQPEDR+ L GLG AAV G WTATNL+TA+DKLPLLPGVLE IGILVS WFVY
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFVY 120

Query: 121 RYLLFKPNRGELLEIINKSVADVLGQ 147
           RYLLFKPNR ELL+IINKSVADVLGQ
Sbjct: 121 RYLLFKPNREELLQIINKSVADVLGQ 145

BLAST of Sed0022313 vs. NCBI nr
Match: XP_038897597.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida])

HSP 1 Score: 221.1 bits (562), Expect = 6.3e-54
Identity = 116/146 (79.45%), Postives = 127/146 (86.99%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKSFTLLNTSHKLSVFPIIAKGPSANVLVKAIGDSSGSSTSINII 60
           MASIVATLPPPLL+P KSFTLLNTS KL+ FP IA   S NV+VKA+G SS SSTS++II
Sbjct: 1   MASIVATLPPPLLAPRKSFTLLNTSQKLTAFP-IANRRSGNVVVKAVGGSSESSTSLDII 60

Query: 61  KSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFVY 120
           KSV+NVWDQPEDR+AL GLG AAVA VWTATNL+TAIDKLPLLPGVLE IG LVS WFVY
Sbjct: 61  KSVRNVWDQPEDRLALFGLGFAAVATVWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVY 120

Query: 121 RYLLFKPNRGELLEIINKSVADVLGQ 147
           RYLLFKPNR ELL+IINKS+ DV GQ
Sbjct: 121 RYLLFKPNREELLQIINKSIIDVFGQ 145

BLAST of Sed0022313 vs. NCBI nr
Match: KAG6593469.1 (Malonate--CoA ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.7 bits (561), Expect = 8.3e-54
Identity = 119/147 (80.95%), Postives = 128/147 (87.07%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKSFTLLNT-SHKLSVFPIIAKGPSANVLVKAIGDSSGSSTSINI 60
           MASI ATLPPPLL+P KSFT L T   KL+VFP IAKG SAN +VKAIGDSS SSTSI+I
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFP-IAKGRSANGIVKAIGDSSESSTSIDI 60

Query: 61  IKSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFV 120
           IKSV+NVWDQPEDR+ L GLG AAV G WTATNL+TA+DKLPLLPGVLE IGILVS WFV
Sbjct: 61  IKSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFV 120

Query: 121 YRYLLFKPNRGELLEIINKSVADVLGQ 147
           YRYLLFKPNR ELL+IINKSVADVLGQ
Sbjct: 121 YRYLLFKPNREELLQIINKSVADVLGQ 146

BLAST of Sed0022313 vs. NCBI nr
Match: XP_022964632.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita moschata] >XP_022964633.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita moschata] >XP_023515295.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023515296.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 119/147 (80.95%), Postives = 128/147 (87.07%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKSFTLLNT-SHKLSVFPIIAKGPSANVLVKAIGDSSGSSTSINI 60
           MASI ATLPPPLL+P KSFT L T   KL+VFP IAKG SAN +VKAIGDSS SSTSI+I
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFP-IAKGRSANGIVKAIGDSSESSTSIDI 60

Query: 61  IKSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFV 120
           IKSV+NVWDQPEDR+ L GLG AAV G WTATNL+TA+DKLPLLPGVLE IGILVS WFV
Sbjct: 61  IKSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFV 120

Query: 121 YRYLLFKPNRGELLEIINKSVADVLGQ 147
           YRYLLFKPNR ELL+IINKSVADVLGQ
Sbjct: 121 YRYLLFKPNREELLQIINKSVADVLGQ 146

BLAST of Sed0022313 vs. NCBI nr
Match: XP_022144822.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Momordica charantia])

HSP 1 Score: 217.6 bits (553), Expect = 7.0e-53
Identity = 115/146 (78.77%), Postives = 128/146 (87.67%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKSFTLLNTSHKLSVFPIIAKGPSANVLVKAIGDSSGSSTSINII 60
           MASIVA+LPPPLL+P KSFTLLNTS KL+VFP IAK  SA V+VKA GDSS SS S++II
Sbjct: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFP-IAKKRSATVVVKATGDSSDSS-SLSII 60

Query: 61  KSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFVY 120
           KSVQN+WDQPEDR+ L GLG AAVA +WTATN +TAIDKLPLLPG+LE IG LVS WFVY
Sbjct: 61  KSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSWWFVY 120

Query: 121 RYLLFKPNRGELLEIINKSVADVLGQ 147
           RYLLFKPNR ELL+IINKS+ADVLGQ
Sbjct: 121 RYLLFKPNREELLQIINKSIADVLGQ 144

BLAST of Sed0022313 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-35
Identity = 77/156 (49.36%), Postives = 106/156 (67.95%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKS----------FTLLNTSHKLSVFPIIAKGPSANVLVKAIGDS 60
           MASI ATLP PLL   +           F+L   ++ LS   +     S +++VKA G+S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SGSSTSINIIKSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELI 120
           S SST ++++ ++QNVWD+ EDR+ L+GLG A +  +W + NLITAIDKLP++    EL+
Sbjct: 61  SDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120

Query: 121 GILVSSWFVYRYLLFKPNRGELLEIINKSVADVLGQ 147
           GIL S+WF YRYLLFKP+R EL +I+ KSVAD+LGQ
Sbjct: 121 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 156

BLAST of Sed0022313 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 3.8e-17
Identity = 43/114 (37.72%), Postives = 71/114 (62.28%), Query Frame = 0

Query: 41  NVLVKA---IGDSSGSSTSI------NIIKSVQNVWDQPEDRIALVGLGLAAVAGVWTAT 100
           NV+ +A   +G++  ++T         I+K+ Q  W++ +D+ A+  L  A V  +W + 
Sbjct: 59  NVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSA 118

Query: 101 NLITAIDKLPLLPGVLELIGILVSSWFVYRYLLFKPNRGELLEIINKSVADVLG 146
            +I+AID+LPL+PGVLEL+GI  + WF Y+ L+FKP+R  L E +  +  D+LG
Sbjct: 119 GMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172

BLAST of Sed0022313 vs. ExPASy Swiss-Prot
Match: O04616 (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-12
Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = 0

Query: 45  KAIGDSSGSSTSINIIKSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLP 104
           +A  + + S  +  +I  ++  WD  E++  ++  G  A+  VW ++ ++ AI+ +PLLP
Sbjct: 62  RASSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLP 121

Query: 105 GVLELIGILVSSWFVYRYLLFKPNRGELLEIINKSVADVLG 146
            V+EL+G+  + WFVYRYLLFK +R EL E I      + G
Sbjct: 122 KVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAG 162

BLAST of Sed0022313 vs. ExPASy Swiss-Prot
Match: Q119Z5 (Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=gltX PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 30/85 (35.29%), Postives = 50/85 (58.82%), Query Frame = 0

Query: 63  VQNVWDQPEDRIALVG-LGLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFVYR 122
           +  ++ Q + ++ L G L L  +   + A  +I A+D +P+L  + ELIG++   WFVYR
Sbjct: 796 INQLYQQYQGQLKLFGWLALVILTFTFMAV-VIEALDGIPILSIIFELIGVIYLVWFVYR 855

Query: 123 YLLFKPNRGELLEIINKSVADVLGQ 147
           YLL + NR ELL+ I     ++ G+
Sbjct: 856 YLLKRSNRQELLDKIENIKREIFGK 879

BLAST of Sed0022313 vs. ExPASy Swiss-Prot
Match: Q8LDD3 (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.1e-06
Identity = 22/66 (33.33%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 80  GLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFVYRYLLFKPNRGELLEIINKS 139
           G  A+  ++  + ++++++ +PL P ++E++G+  + WF  RYLLFK NR EL   +++ 
Sbjct: 124 GSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEI 183

Query: 140 VADVLG 146
              VLG
Sbjct: 184 KKQVLG 189

BLAST of Sed0022313 vs. ExPASy TrEMBL
Match: A0A6J1KFS9 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494666 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.8e-54
Identity = 117/146 (80.14%), Postives = 127/146 (86.99%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKSFTLLNTSHKLSVFPIIAKGPSANVLVKAIGDSSGSSTSINII 60
           MASI ATLPPPLL+P KSF  L T  K++VFP IAKG SAN +VKAIGDSS SSTSI+II
Sbjct: 1   MASIFATLPPPLLAPGKSFNPLFTYQKITVFP-IAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFVY 120
           KSV+NVWDQPEDR+ L GLG AAV G WTATNL+TA+DKLPLLPGVLE IGILVS WFVY
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFVY 120

Query: 121 RYLLFKPNRGELLEIINKSVADVLGQ 147
           RYLLFKPNR ELL+IINKSVADVLGQ
Sbjct: 121 RYLLFKPNREELLQIINKSVADVLGQ 145

BLAST of Sed0022313 vs. ExPASy TrEMBL
Match: A0A6J1HLG0 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464586 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.2e-54
Identity = 119/147 (80.95%), Postives = 128/147 (87.07%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKSFTLLNT-SHKLSVFPIIAKGPSANVLVKAIGDSSGSSTSINI 60
           MASI ATLPPPLL+P KSFT L T   KL+VFP IAKG SAN +VKAIGDSS SSTSI+I
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFP-IAKGRSANGIVKAIGDSSESSTSIDI 60

Query: 61  IKSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFV 120
           IKSV+NVWDQPEDR+ L GLG AAV G WTATNL+TA+DKLPLLPGVLE IGILVS WFV
Sbjct: 61  IKSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFV 120

Query: 121 YRYLLFKPNRGELLEIINKSVADVLGQ 147
           YRYLLFKPNR ELL+IINKSVADVLGQ
Sbjct: 121 YRYLLFKPNREELLQIINKSVADVLGQ 146

BLAST of Sed0022313 vs. ExPASy TrEMBL
Match: A0A6J1CUT1 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014410 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.4e-53
Identity = 115/146 (78.77%), Postives = 128/146 (87.67%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKSFTLLNTSHKLSVFPIIAKGPSANVLVKAIGDSSGSSTSINII 60
           MASIVA+LPPPLL+P KSFTLLNTS KL+VFP IAK  SA V+VKA GDSS SS S++II
Sbjct: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFP-IAKKRSATVVVKATGDSSDSS-SLSII 60

Query: 61  KSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFVY 120
           KSVQN+WDQPEDR+ L GLG AAVA +WTATN +TAIDKLPLLPG+LE IG LVS WFVY
Sbjct: 61  KSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSWWFVY 120

Query: 121 RYLLFKPNRGELLEIINKSVADVLGQ 147
           RYLLFKPNR ELL+IINKS+ADVLGQ
Sbjct: 121 RYLLFKPNREELLQIINKSIADVLGQ 144

BLAST of Sed0022313 vs. ExPASy TrEMBL
Match: A0A0A0KC66 (CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447010 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.3e-52
Identity = 112/146 (76.71%), Postives = 125/146 (85.62%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKSFTLLNTSHKLSVFPIIAKGPSANVLVKAIGDSSGSSTSINII 60
           MASIVATLPPPLL+P KSFT+LN S KLSVF   A G S NV+VKA+G SS SSTS++I+
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVFS-TANGRSGNVVVKAVGGSSESSTSLDIV 60

Query: 61  KSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFVY 120
           KSV+NVWDQPEDR+AL GLG AAVA  WTATN++TAIDKLPLLPGVLE IG LVS WFVY
Sbjct: 61  KSVRNVWDQPEDRLALFGLGFAAVATAWTATNVVTAIDKLPLLPGVLEFIGALVSWWFVY 120

Query: 121 RYLLFKPNRGELLEIINKSVADVLGQ 147
           RYLLFKPNR ELL+IINKS+ DV GQ
Sbjct: 121 RYLLFKPNREELLQIINKSILDVFGQ 145

BLAST of Sed0022313 vs. ExPASy TrEMBL
Match: A0A5D3BWY3 (Protein CURVATURE THYLAKOID 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002150 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.7e-52
Identity = 113/146 (77.40%), Postives = 123/146 (84.25%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKSFTLLNTSHKLSVFPIIAKGPSANVLVKAIGDSSGSSTSINII 60
           MASIVATLPPPLL+P KSFT+LN S KLSV    AKG   NV+VKA+G SS SSTS++II
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLS-TAKGRCGNVVVKAVGGSSESSTSLDII 60

Query: 61  KSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELIGILVSSWFVY 120
           KSV+NVWDQPEDR AL GLG AAVA  WTATNL+TAIDKLPLLPGVLE IG LVS WFVY
Sbjct: 61  KSVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVY 120

Query: 121 RYLLFKPNRGELLEIINKSVADVLGQ 147
           RYLLFKPNR ELL+IINKS+ DV GQ
Sbjct: 121 RYLLFKPNREELLQIINKSILDVFGQ 145

BLAST of Sed0022313 vs. TAIR 10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 150.6 bits (379), Expect = 9.8e-37
Identity = 77/156 (49.36%), Postives = 106/156 (67.95%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKS----------FTLLNTSHKLSVFPIIAKGPSANVLVKAIGDS 60
           MASI ATLP PLL   +           F+L   ++ LS   +     S +++VKA G+S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SGSSTSINIIKSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELI 120
           S SST ++++ ++QNVWD+ EDR+ L+GLG A +  +W + NLITAIDKLP++    EL+
Sbjct: 61  SDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120

Query: 121 GILVSSWFVYRYLLFKPNRGELLEIINKSVADVLGQ 147
           GIL S+WF YRYLLFKP+R EL +I+ KSVAD+LGQ
Sbjct: 121 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 156

BLAST of Sed0022313 vs. TAIR 10
Match: AT1G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 144.4 bits (363), Expect = 7.0e-35
Identity = 76/156 (48.72%), Postives = 105/156 (67.31%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKS----------FTLLNTSHKLSVFPIIAKGPSANVLVKAIGDS 60
           MASI ATLP PLL   +           F+L   ++ LS   +     S +++VKA G+S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SGSSTSINIIKSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELI 120
           S SST ++++ ++QN WD+ EDR+ L+GLG A +  +W + NLITAIDKLP++    EL+
Sbjct: 61  SDSSTDLDVVSTIQN-WDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120

Query: 121 GILVSSWFVYRYLLFKPNRGELLEIINKSVADVLGQ 147
           GIL S+WF YRYLLFKP+R EL +I+ KSVAD+LGQ
Sbjct: 121 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 155

BLAST of Sed0022313 vs. TAIR 10
Match: AT1G52220.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 251 Blast hits to 251 proteins in 43 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-21
Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = 0

Query: 1   MASIVATLPPPLLSPAKS----------FTLLNTSHKLSVFPIIAKGPSANVLVKAIGDS 60
           MASI ATLP PLL   +           F+L   ++ LS   +     S +++VKA G+S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SGSSTSINIIKSVQNVWDQPEDRIALVGLGLAAVAGVWTATNLITAIDKLPLLPGVLELI 120
           S SST ++++ ++QNV                             AIDKLP++    EL+
Sbjct: 61  SDSSTDLDVVSTIQNV-----------------------------AIDKLPVISSGFELV 120

Query: 121 GILVSSWFVYRYLLFKPNRGELLEIINKSVADVLGQ 147
           GIL S+WF YRYLLFKP+R EL +I+ KSVAD+LGQ
Sbjct: 121 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 127

BLAST of Sed0022313 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit )

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-18
Identity = 43/114 (37.72%), Postives = 71/114 (62.28%), Query Frame = 0

Query: 41  NVLVKA---IGDSSGSSTSI------NIIKSVQNVWDQPEDRIALVGLGLAAVAGVWTAT 100
           NV+ +A   +G++  ++T         I+K+ Q  W++ +D+ A+  L  A V  +W + 
Sbjct: 59  NVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSA 118

Query: 101 NLITAIDKLPLLPGVLELIGILVSSWFVYRYLLFKPNRGELLEIINKSVADVLG 146
            +I+AID+LPL+PGVLEL+GI  + WF Y+ L+FKP+R  L E +  +  D+LG
Sbjct: 119 GMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172

BLAST of Sed0022313 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit )

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-18
Identity = 43/114 (37.72%), Postives = 71/114 (62.28%), Query Frame = 0

Query: 41  NVLVKA---IGDSSGSSTSI------NIIKSVQNVWDQPEDRIALVGLGLAAVAGVWTAT 100
           NV+ +A   +G++  ++T         I+K+ Q  W++ +D+ A+  L  A V  +W + 
Sbjct: 59  NVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSA 118

Query: 101 NLITAIDKLPLLPGVLELIGILVSSWFVYRYLLFKPNRGELLEIINKSVADVLG 146
            +I+AID+LPL+PGVLEL+GI  + WF Y+ L+FKP+R  L E +  +  D+LG
Sbjct: 119 GMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023000405.13.7e-5480.14protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima] >XP_023000406.1... [more]
XP_038897597.16.3e-5479.45protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida][more]
KAG6593469.18.3e-5480.95Malonate--CoA ligase, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022964632.11.1e-5380.95protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita moschata] >XP_022964633... [more]
XP_022144822.17.0e-5378.77protein CURVATURE THYLAKOID 1C, chloroplastic [Momordica charantia][more]
Match NameE-valueIdentityDescription
Q9M8121.4e-3549.36Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Q8LCA13.8e-1737.72Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
O046162.8e-1235.64Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Q119Z51.3e-0635.29Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=... [more]
Q8LDD35.1e-0633.33Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
A0A6J1KFS91.8e-5480.14protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1HLG05.2e-5480.95protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1CUT13.4e-5378.77protein CURVATURE THYLAKOID 1C, chloroplastic OS=Momordica charantia OX=3673 GN=... [more]
A0A0A0KC661.3e-5276.71CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447010 PE=4 S... [more]
A0A5D3BWY33.7e-5277.40Protein CURVATURE THYLAKOID 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Match NameE-valueIdentityDescription
AT1G52220.19.8e-3749.36FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G52220.27.0e-3548.72FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G52220.34.4e-2139.74FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G46820.12.7e-1837.72photosystem I P subunit [more]
AT2G46820.22.7e-1837.72photosystem I P subunit [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025564Cyanobacterial aminoacyl-tRNA synthetase, CAAD domainPFAMPF14159CAADcoord: 64..144
e-value: 4.9E-26
score: 90.4
IPR033344Protein CURVATURE THYLAKOID 1PANTHERPTHR33222FAMILY NOT NAMEDcoord: 1..145
NoneNo IPR availablePANTHERPTHR33222:SF3PROTEIN CURVATURE THYLAKOID 1C, CHLOROPLASTICcoord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022313.1Sed0022313.1mRNA
Sed0022313.2Sed0022313.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009579 thylakoid