Sed0022305 (gene) Chayote v1

Overview


Name	Sed0022305
Type	gene
Organism	Sechium edule (Chayote v1)
Description	E3 ubiquitin-protein ligase SGR9, amyloplastic
Location	LG02: 44996584 .. 44997417 (+)
RNA-Seq Expression	Sed0022305
Synteny	Sed0022305

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATTAGAGGCCCCCACAGTCATCATGGCCGCCCTCTCAACTCTCCCTCCGCCGCATCTCTCCGATCTGTCCCACTCCATCTTCTCCGACAGCCACCACCGGCGCCGCCGCCTGACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTTCCCCTCTCCCACAAATCCATCCTCATCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAACCGCCGTCTCCGCCGCCGCCCACCTCCGCCGTCTCTCCCCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAGCACAACCCCACCGCCCTCAAAGCTCCGATCAACCAATGGCGCTCGACCCTTTGTAGAATCTACTCCGATTCCCTCTTGTCGATCTCCGGCGTCGCCACTGGCGGCGCCGCCGCCAGCGTCTTGATTCCCTACGTTGAGACGGTGGCGCGGTGCTGGAAGTTCGTGGGGTTTGTTGGGAGCTGCGGTGGGAAGGCCCGGAGGGAGGTGGCGGCGTCGGCGGTGGCGGTGGTGGAGCTGCCGTCGGTGGCGGTTAGCGGCAGCGGCGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGTATGAAGGGAGAGACGCGTGTCAGTTGCCATGTGAGCACTTGTTTCATTGGCTGTGCATTCTGCCGTGGCTGAGGAAGACGAACACGTGTCCCTGCTGCAGGTTTCAGCTTCCCACGGATGATATCTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCGTTAAAGTGGGCTCCACGATGTGTGATTGA

mRNA sequence

ATGGAAGAATTAGAGGCCCCCACAGTCATCATGGCCGCCCTCTCAACTCTCCCTCCGCCGCATCTCTCCGATCTGTCCCACTCCATCTTCTCCGACAGCCACCACCGGCGCCGCCGCCTGACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTTCCCCTCTCCCACAAATCCATCCTCATCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAACCGCCGTCTCCGCCGCCGCCCACCTCCGCCGTCTCTCCCCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAGCACAACCCCACCGCCCTCAAAGCTCCGATCAACCAATGGCGCTCGACCCTTTGTAGAATCTACTCCGATTCCCTCTTGTCGATCTCCGGCGTCGCCACTGGCGGCGCCGCCGCCAGCGTCTTGATTCCCTACGTTGAGACGGTGGCGCGGTGCTGGAAGTTCGTGGGGTTTGTTGGGAGCTGCGGTGGGAAGGCCCGGAGGGAGGTGGCGGCGTCGGCGGTGGCGGTGGTGGAGCTGCCGTCGGTGGCGGTTAGCGGCAGCGGCGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGTATGAAGGGAGAGACGCGTGTCAGTTGCCATGTGAGCACTTGTTTCATTGGCTGTGCATTCTGCCGTGGCTGAGGAAGACGAACACGTGTCCCTGCTGCAGGTTTCAGCTTCCCACGGATGATATCTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCGTTAAAGTGGGCTCCACGATGTGTGATTGA

Coding sequence (CDS)

ATGGAAGAATTAGAGGCCCCCACAGTCATCATGGCCGCCCTCTCAACTCTCCCTCCGCCGCATCTCTCCGATCTGTCCCACTCCATCTTCTCCGACAGCCACCACCGGCGCCGCCGCCTGACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTTCCCCTCTCCCACAAATCCATCCTCATCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAACCGCCGTCTCCGCCGCCGCCCACCTCCGCCGTCTCTCCCCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAGCACAACCCCACCGCCCTCAAAGCTCCGATCAACCAATGGCGCTCGACCCTTTGTAGAATCTACTCCGATTCCCTCTTGTCGATCTCCGGCGTCGCCACTGGCGGCGCCGCCGCCAGCGTCTTGATTCCCTACGTTGAGACGGTGGCGCGGTGCTGGAAGTTCGTGGGGTTTGTTGGGAGCTGCGGTGGGAAGGCCCGGAGGGAGGTGGCGGCGTCGGCGGTGGCGGTGGTGGAGCTGCCGTCGGTGGCGGTTAGCGGCAGCGGCGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGTATGAAGGGAGAGACGCGTGTCAGTTGCCATGTGAGCACTTGTTTCATTGGCTGTGCATTCTGCCGTGGCTGAGGAAGACGAACACGTGTCCCTGCTGCAGGTTTCAGCTTCCCACGGATGATATCTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCGTTAAAGTGGGCTCCACGATGTGTGATTGA

Protein sequence

MEELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSLPLSHKSILIARFLLSALRRLSRPFQPPSPPPPTSAVSPRDLDAAVLLLLLCEVRQHNPTALKAPINQWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGSCGGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCILPWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVKVGSTMCD

Homology

[Close]

BLAST of Sed0022305 vs. NCBI nr
Match: XP_038905798.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Benincasa hispida])

HSP 1 Score: 458.8 bits (1179), Expect = 3.4e-125
Identity = 231/280 (82.50%), Postives = 246/280 (87.86%), Query Frame = 0


Query: 1   MEELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           ME+LE PTVIMAALS L PP LSDLSHSIFSD H  RRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 1   MEKLEPPTVIMAALSALSPPSLSDLSHSIFSDIHLHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 61  PLSHKSILIARFLLSALRRLSRPFQPPSP----PPPTSAVSPRDLDAAVLLLLLCEVRQH 120
            LSHKS+L+ARFLLS LRRLS PFQ  S      P T+ +SP+DLDAAVLLLLLCEVRQH
Sbjct: 61  SLSHKSLLLARFLLSTLRRLSCPFQSQSKLFPHHPSTATISPQDLDAAVLLLLLCEVRQH 120

Query: 121 NPTALKAPINQWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGSC 180
           NP AL+ PI +WR+TLCRIYSDSLL+ISG+ATGG  A  LIPY+ETV RCWKFVGFVGSC
Sbjct: 121 NPAALRTPITKWRATLCRIYSDSLLTISGIATGGGGA--LIPYIETVVRCWKFVGFVGSC 180

Query: 181 GGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCIL 240
           GGKARREVAAS VAVVELPSVAV G GA VECVICKEEM EGRDAC+LPC+HLFHWLCIL
Sbjct: 181 GGKARREVAASPVAVVELPSVAVGGGGALVECVICKEEMVEGRDACKLPCDHLFHWLCIL 240

Query: 241 PWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVKVGSTMC 277
           PWLRK NTCPCCRFQLPTDDIFGEIQRLWEIL+KVGSTMC
Sbjct: 241 PWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMC 278

[Close]

BLAST of Sed0022305 vs. NCBI nr
Match: XP_016899723.1 (PREDICTED: E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo])

HSP 1 Score: 458.4 bits (1178), Expect = 4.5e-125
Identity = 227/280 (81.07%), Postives = 248/280 (88.57%), Query Frame = 0


Query: 1   MEELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           MEELE P+VIMAAL+TL PP L+DLSHSIFS+ H  RRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 1   MEELEPPSVIMAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 61  PLSHKSILIARFLLSALRRLSRPFQPPSP----PPPTSAVSPRDLDAAVLLLLLCEVRQH 120
            LSHKS+L+ARFLLSALRRLSRPFQ PS      P T+A+SP+DLDAAVLLLLLCEVRQH
Sbjct: 61  SLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQH 120

Query: 121 NPTALKAPINQWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGSC 180
           NP AL+ PI +WR+TLCRIYS+SLL+ISG+ATGG  A  LIPY++TV RCWKFVGFVGSC
Sbjct: 121 NPAALRTPITKWRATLCRIYSESLLTISGLATGGGGA--LIPYIDTVVRCWKFVGFVGSC 180

Query: 181 GGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCIL 240
           GGK RREVAAS +AVVELPSVAV G G  VECVICKEEM EGRDAC+LPC+HLFHWLCIL
Sbjct: 181 GGKVRREVAASPMAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCIL 240

Query: 241 PWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVKVGSTMC 277
           PWLRK NTCPCCRFQLPTDD+FGEIQRLWEIL KVGSTMC
Sbjct: 241 PWLRKRNTCPCCRFQLPTDDVFGEIQRLWEILFKVGSTMC 278

[Close]

BLAST of Sed0022305 vs. NCBI nr
Match: XP_004137953.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis sativus] >KGN58913.1 hypothetical protein Csa_002303 [Cucumis sativus])

HSP 1 Score: 456.8 bits (1174), Expect = 1.3e-124
Identity = 226/280 (80.71%), Postives = 248/280 (88.57%), Query Frame = 0


Query: 1   MEELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           MEELE P+VI AAL+TL PP L+DLSHSIFS+ H  RRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 1   MEELEPPSVITAALATLSPPRLADLSHSIFSEIHQHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 61  PLSHKSILIARFLLSALRRLSRPFQPPSP----PPPTSAVSPRDLDAAVLLLLLCEVRQH 120
            LSHKS+L+ARFLLSALRRLSRPFQ PS      P T+A+SP+DLDAAVLLLLLCEVRQH
Sbjct: 61  SLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQH 120

Query: 121 NPTALKAPINQWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGSC 180
           NP AL+ PI +WR+TLC+IYSDSLL++SG+ATGG  A  LIPY++TV RCWKFVGFVGSC
Sbjct: 121 NPAALRTPITKWRATLCKIYSDSLLTVSGLATGGGGA--LIPYIDTVVRCWKFVGFVGSC 180

Query: 181 GGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCIL 240
           GGK RREVAAS +AVVELPSVAV G GAAVECVICKEEM EGRDAC+LPC+HLFHWLCIL
Sbjct: 181 GGKVRREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCIL 240

Query: 241 PWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVKVGSTMC 277
           PWLRK NTCPCCRFQLPTDD+ GEIQRLWEIL KVGSTMC
Sbjct: 241 PWLRKRNTCPCCRFQLPTDDVLGEIQRLWEILFKVGSTMC 278

[Close]

BLAST of Sed0022305 vs. NCBI nr
Match: XP_022145706.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic [Momordica charantia])

HSP 1 Score: 451.4 bits (1160), Expect = 5.5e-123
Identity = 227/279 (81.36%), Postives = 247/279 (88.53%), Query Frame = 0


Query: 1   MEELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           MEELE PTVIMAALS L P HLSDLSHSIFSD HHRRRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 30  MEELEPPTVIMAALSALSPLHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 89

Query: 61  PLSHKSILIARFLLSALRRLSRPFQPPSPP----PPTSAVSPRDLDAAVLLLLLCEVRQH 120
            LSHKS+LIARFLLSALRRL  PFQPP+      P T+A++PRDLDAAVLLLLLCEVRQH
Sbjct: 90  SLSHKSLLIARFLLSALRRLCHPFQPPAKSLPQHPSTAAITPRDLDAAVLLLLLCEVRQH 149

Query: 121 NPTALKAPINQWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGSC 180
           NP AL+ P+ +WR+ LCRIYSDS+LSISG+ +GG A  V++PYVETVARCWKFVGFVGSC
Sbjct: 150 NPAALETPLPKWRAALCRIYSDSILSISGIISGGGA--VMVPYVETVARCWKFVGFVGSC 209

Query: 181 GGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCIL 240
           GGK +REVAAS VAVVELPSVA   + AAVECVICKEEM EGRDACQLPCEHLFHWLCIL
Sbjct: 210 GGKGKREVAASPVAVVELPSVA---AAAAVECVICKEEMGEGRDACQLPCEHLFHWLCIL 269

Query: 241 PWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVKVGSTM 276
           PWLRK NTCPCCRFQLPTDD+F EIQRLWEIL+K+GST+
Sbjct: 270 PWLRKRNTCPCCRFQLPTDDVFAEIQRLWEILLKLGSTI 303

[Close]

BLAST of Sed0022305 vs. NCBI nr
Match: KAG6596438.1 (E3 ubiquitin-protein ligase SGR9, amyloplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 448.7 bits (1153), Expect = 3.5e-122
Identity = 235/279 (84.23%), Postives = 246/279 (88.17%), Query Frame = 0


Query: 1   MEELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           MEEL+  TVIMAALSTL PPHLSDLSHSIFSD H  RRRLTFILSSPTLFS TLRHLNSL
Sbjct: 1   MEELKPSTVIMAALSTLSPPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60

Query: 61  PLSHKSILIARFLLSALRRLSRPFQPPSPP----PPTSAVSPRDLDAAVLLLLLCEVRQH 120
            LSHKS+LIARFLLSALRRLSRPFQ PS      P T+AV+PRDLDAAVLLLLLC+VRQH
Sbjct: 61  SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120

Query: 121 NPTALKAPINQWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGS- 180
           NP AL+ PI QWRSTLCRIYSDSLL+ISG+ATGGA A   IPY+ETVARCWKFVGFV S 
Sbjct: 121 NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGA--FIPYIETVARCWKFVGFVVSR 180

Query: 181 CGGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCI 240
            GGKARREVAAS VAVVELPSVAV G   AVECVICKEEM EGRDACQLPCEHLFHWLCI
Sbjct: 181 NGGKARREVAASPVAVVELPSVAVGGC-MAVECVICKEEMNEGRDACQLPCEHLFHWLCI 240

Query: 241 LPWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVKVGST 275
           LPWLRK NTCPCCRFQLPTDDIFGEIQRLW+ILVKVGS+
Sbjct: 241 LPWLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSS 276

[Close]

BLAST of Sed0022305 vs. ExPASy Swiss-Prot
Match: Q8GXF8 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 GN=SGR9 PE=1 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.4e-68
Identity = 152/279 (54.48%), Postives = 183/279 (65.59%), Query Frame = 0


Query: 3   ELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSLPL 62
           E E  T+IMA+LS L P HL++L+HSI S SHH RRRL  +LSSPTLFSLTLRHL SL L
Sbjct: 2   EDENTTIIMASLSALSPSHLTNLTHSILSISHHHRRRLGAVLSSPTLFSLTLRHLLSLSL 61

Query: 63  SHKSILIARFLLSALRRLSRPFQPPSPPPPTSAVSPRDLDAAVLLLLLCEVRQHNPTALK 122
             K+ LIA  LLS L  L    +  S    T  +  RDLDA VLLL LCE  Q +P  L+
Sbjct: 62  PDKTHLIANHLLSLLHPLLIHRKHHSSYAVTMKL--RDLDAVVLLLFLCETHQLHPDVLE 121

Query: 123 APINQWRSTLCRIYSDSLLS-ISGVATGGAAASVLIPYVETVARCWKFVGFVGSCGGKAR 182
           A  + WR  L   YS+++LS  SG+ T    A +L+PY+ET+ RC +FV  +G      R
Sbjct: 122 ASADNWREILGNTYSNNMLSNNSGLWT--CDAGILMPYIETLVRCKRFVDIMGGYNHLRR 181

Query: 183 R------EVAASAVAVVELPSVAV----SGSGAAVECVICKEEMYEGRDACQLPCEHLFH 242
           R      +V A+  AVV L +V V    + +   VECVICKEEM EGRD C++PC+H FH
Sbjct: 182 RDQKEGYQVPAARAAVVALRAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQHFFH 241

Query: 243 WLCILPWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVK 271
           W CILPWL K NTCP CRFQLPTDD+F EIQRLWEILVK
Sbjct: 242 WKCILPWLSKKNTCPFCRFQLPTDDVFSEIQRLWEILVK 276

[Close]

BLAST of Sed0022305 vs. ExPASy Swiss-Prot
Match: Q9P0P0 (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.8e-15
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 186 ASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCILPWLRKTNTC 245
           A+   V  LP   + GS A ++C +C  E  E   A ++PC HLFH  CILPWL KTN+C
Sbjct: 54  AAKTVVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSC 113

Query: 246 PCCRFQLPTDD 257
           P CR++LPTDD
Sbjct: 114 PLCRYELPTDD 124

[Close]

BLAST of Sed0022305 vs. ExPASy Swiss-Prot
Match: Q3T0W3 (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-15
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 186 ASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCILPWLRKTNTC 245
           A+  AV  LP   + GS A ++C +C  E  E   A ++PC HLFH  CILPWL KTN+C
Sbjct: 54  AAKTAVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSC 113

Query: 246 PCCRFQLPTDD 257
           P CR +LPTDD
Sbjct: 114 PLCRHELPTDD 124

[Close]

BLAST of Sed0022305 vs. ExPASy Swiss-Prot
Match: Q6GPV5 (E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-14
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 186 ASAVAVVELPSVAVS--GSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCILPWLRKTN 245
           AS   V  LP V V+   + AA++C +C  E  EG    QLPCEHLFH  CILPWL KTN
Sbjct: 55  ASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTN 114

Query: 246 TCPCCRFQLPTD 256
           +CP CR +LPTD
Sbjct: 115 SCPLCRHELPTD 126

[Close]

BLAST of Sed0022305 vs. ExPASy Swiss-Prot
Match: Q9VE61 (E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN=CG7694 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-14
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 186 ASAVAVVELP--SVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCILPWLRKTN 245
           AS  A++ELP   +  S  G  +EC +CKE   EG+    LPC+H FH  CIL WL+KTN
Sbjct: 46  ASKRAILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTN 105

Query: 246 TCPCCRFQLPTDD-IFGEIQR 264
           +CP CR++L TDD ++ E++R
Sbjct: 106 SCPLCRYELETDDPVYEELRR 126

[Close]

BLAST of Sed0022305 vs. ExPASy TrEMBL
Match: A0A1S4DUS9 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo OX=3656 GN=LOC103486430 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 2.2e-125
Identity = 227/280 (81.07%), Postives = 248/280 (88.57%), Query Frame = 0


Query: 1   MEELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           MEELE P+VIMAAL+TL PP L+DLSHSIFS+ H  RRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 1   MEELEPPSVIMAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 61  PLSHKSILIARFLLSALRRLSRPFQPPSP----PPPTSAVSPRDLDAAVLLLLLCEVRQH 120
            LSHKS+L+ARFLLSALRRLSRPFQ PS      P T+A+SP+DLDAAVLLLLLCEVRQH
Sbjct: 61  SLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQH 120

Query: 121 NPTALKAPINQWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGSC 180
           NP AL+ PI +WR+TLCRIYS+SLL+ISG+ATGG  A  LIPY++TV RCWKFVGFVGSC
Sbjct: 121 NPAALRTPITKWRATLCRIYSESLLTISGLATGGGGA--LIPYIDTVVRCWKFVGFVGSC 180

Query: 181 GGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCIL 240
           GGK RREVAAS +AVVELPSVAV G G  VECVICKEEM EGRDAC+LPC+HLFHWLCIL
Sbjct: 181 GGKVRREVAASPMAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCIL 240

Query: 241 PWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVKVGSTMC 277
           PWLRK NTCPCCRFQLPTDD+FGEIQRLWEIL KVGSTMC
Sbjct: 241 PWLRKRNTCPCCRFQLPTDDVFGEIQRLWEILFKVGSTMC 278

[Close]

BLAST of Sed0022305 vs. ExPASy TrEMBL
Match: A0A0A0LAQ3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736610 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 6.3e-125
Identity = 226/280 (80.71%), Postives = 248/280 (88.57%), Query Frame = 0


Query: 1   MEELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           MEELE P+VI AAL+TL PP L+DLSHSIFS+ H  RRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 1   MEELEPPSVITAALATLSPPRLADLSHSIFSEIHQHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 61  PLSHKSILIARFLLSALRRLSRPFQPPSP----PPPTSAVSPRDLDAAVLLLLLCEVRQH 120
            LSHKS+L+ARFLLSALRRLSRPFQ PS      P T+A+SP+DLDAAVLLLLLCEVRQH
Sbjct: 61  SLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQH 120

Query: 121 NPTALKAPINQWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGSC 180
           NP AL+ PI +WR+TLC+IYSDSLL++SG+ATGG  A  LIPY++TV RCWKFVGFVGSC
Sbjct: 121 NPAALRTPITKWRATLCKIYSDSLLTVSGLATGGGGA--LIPYIDTVVRCWKFVGFVGSC 180

Query: 181 GGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCIL 240
           GGK RREVAAS +AVVELPSVAV G GAAVECVICKEEM EGRDAC+LPC+HLFHWLCIL
Sbjct: 181 GGKVRREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCIL 240

Query: 241 PWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVKVGSTMC 277
           PWLRK NTCPCCRFQLPTDD+ GEIQRLWEIL KVGSTMC
Sbjct: 241 PWLRKRNTCPCCRFQLPTDDVLGEIQRLWEILFKVGSTMC 278

[Close]

BLAST of Sed0022305 vs. ExPASy TrEMBL
Match: A0A6J1CX45 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Momordica charantia OX=3673 GN=LOC111015097 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 2.6e-123
Identity = 227/279 (81.36%), Postives = 247/279 (88.53%), Query Frame = 0


Query: 1   MEELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           MEELE PTVIMAALS L P HLSDLSHSIFSD HHRRRRLTFILSSPTLFSLTLRHLNSL
Sbjct: 30  MEELEPPTVIMAALSALSPLHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 89

Query: 61  PLSHKSILIARFLLSALRRLSRPFQPPSPP----PPTSAVSPRDLDAAVLLLLLCEVRQH 120
            LSHKS+LIARFLLSALRRL  PFQPP+      P T+A++PRDLDAAVLLLLLCEVRQH
Sbjct: 90  SLSHKSLLIARFLLSALRRLCHPFQPPAKSLPQHPSTAAITPRDLDAAVLLLLLCEVRQH 149

Query: 121 NPTALKAPINQWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGSC 180
           NP AL+ P+ +WR+ LCRIYSDS+LSISG+ +GG A  V++PYVETVARCWKFVGFVGSC
Sbjct: 150 NPAALETPLPKWRAALCRIYSDSILSISGIISGGGA--VMVPYVETVARCWKFVGFVGSC 209

Query: 181 GGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCIL 240
           GGK +REVAAS VAVVELPSVA   + AAVECVICKEEM EGRDACQLPCEHLFHWLCIL
Sbjct: 210 GGKGKREVAASPVAVVELPSVA---AAAAVECVICKEEMGEGRDACQLPCEHLFHWLCIL 269

Query: 241 PWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVKVGSTM 276
           PWLRK NTCPCCRFQLPTDD+F EIQRLWEIL+K+GST+
Sbjct: 270 PWLRKRNTCPCCRFQLPTDDVFAEIQRLWEILLKLGSTI 303

[Close]

BLAST of Sed0022305 vs. ExPASy TrEMBL
Match: A0A6J1F6V7 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita moschata OX=3662 GN=LOC111442657 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.5e-121
Identity = 234/279 (83.87%), Postives = 245/279 (87.81%), Query Frame = 0


Query: 1   MEELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSL 60
           MEEL+  TVIMAALSTL  PHLSDLSHSIFSD H  RRRLTFILSSPTLFS TLRHLNSL
Sbjct: 1   MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60

Query: 61  PLSHKSILIARFLLSALRRLSRPFQPPSPP----PPTSAVSPRDLDAAVLLLLLCEVRQH 120
            LSHKS+LIARFLLSALRRLSRPFQ PS      P T+AV+PRDLDAAVLLLLLC+VRQH
Sbjct: 61  SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120

Query: 121 NPTALKAPINQWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGS- 180
           NP AL+ PI QWRSTLCRIYSDSLL+ISG+ATGGA A   IPY+ETVARCWKFVGFV S 
Sbjct: 121 NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGA--FIPYIETVARCWKFVGFVVSR 180

Query: 181 CGGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCI 240
            GGKARREVAAS VAVVELPSVAV G   AVECVICKEEM EGRDACQLPCEHLFHWLCI
Sbjct: 181 NGGKARREVAASPVAVVELPSVAVGGC-MAVECVICKEEMNEGRDACQLPCEHLFHWLCI 240

Query: 241 LPWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVKVGST 275
           LPWLRK NTCPCCRFQLPTDDIFGEIQRLW+ILVKVGS+
Sbjct: 241 LPWLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSS 276

[Close]

BLAST of Sed0022305 vs. ExPASy TrEMBL
Match: A0A5A7TLA8 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002040 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.5e-121
Identity = 219/270 (81.11%), Postives = 239/270 (88.52%), Query Frame = 0


Query: 11  MAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSLPLSHKSILIA 70
           MAAL+TL PP L+DLSHSIFS+ H  RRRLTFILSSPTLFSLTLRHLNSL LSHKS+L+A
Sbjct: 1   MAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLA 60

Query: 71  RFLLSALRRLSRPFQPPSP----PPPTSAVSPRDLDAAVLLLLLCEVRQHNPTALKAPIN 130
           RFLLSALRRLSRPFQ PS      P T+A+SP+DLDAAVLLLLLCEVRQHNP AL+ PI 
Sbjct: 61  RFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPIT 120

Query: 131 QWRSTLCRIYSDSLLSISGVATGGAAASVLIPYVETVARCWKFVGFVGSCGGKARREVAA 190
           +WR+TLCRIYS+SLL+ISG+ATGG  A  LIPY++TV RCWKFVGFVGSCGGK RREVAA
Sbjct: 121 KWRATLCRIYSESLLTISGLATGGGGA--LIPYIDTVVRCWKFVGFVGSCGGKVRREVAA 180

Query: 191 SAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWLCILPWLRKTNTCP 250
           S +AVVELPSVAV G G  VECVICKEEM EGRDAC+LPC+HLFHWLCILPWLRK NTCP
Sbjct: 181 SPMAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCP 240

Query: 251 CCRFQLPTDDIFGEIQRLWEILVKVGSTMC 277
           CCRFQLPTDD+FGEIQRLWEIL KVGSTMC
Sbjct: 241 CCRFQLPTDDVFGEIQRLWEILFKVGSTMC 268

[Close]

BLAST of Sed0022305 vs. TAIR 10
Match: AT5G02750.1 (RING/U-box superfamily protein )

HSP 1 Score: 261.2 bits (666), Expect = 9.7e-70
Identity = 152/279 (54.48%), Postives = 183/279 (65.59%), Query Frame = 0


Query: 3   ELEAPTVIMAALSTLPPPHLSDLSHSIFSDSHHRRRRLTFILSSPTLFSLTLRHLNSLPL 62
           E E  T+IMA+LS L P HL++L+HSI S SHH RRRL  +LSSPTLFSLTLRHL SL L
Sbjct: 2   EDENTTIIMASLSALSPSHLTNLTHSILSISHHHRRRLGAVLSSPTLFSLTLRHLLSLSL 61

Query: 63  SHKSILIARFLLSALRRLSRPFQPPSPPPPTSAVSPRDLDAAVLLLLLCEVRQHNPTALK 122
             K+ LIA  LLS L  L    +  S    T  +  RDLDA VLLL LCE  Q +P  L+
Sbjct: 62  PDKTHLIANHLLSLLHPLLIHRKHHSSYAVTMKL--RDLDAVVLLLFLCETHQLHPDVLE 121

Query: 123 APINQWRSTLCRIYSDSLLS-ISGVATGGAAASVLIPYVETVARCWKFVGFVGSCGGKAR 182
           A  + WR  L   YS+++LS  SG+ T    A +L+PY+ET+ RC +FV  +G      R
Sbjct: 122 ASADNWREILGNTYSNNMLSNNSGLWT--CDAGILMPYIETLVRCKRFVDIMGGYNHLRR 181

Query: 183 R------EVAASAVAVVELPSVAV----SGSGAAVECVICKEEMYEGRDACQLPCEHLFH 242
           R      +V A+  AVV L +V V    + +   VECVICKEEM EGRD C++PC+H FH
Sbjct: 182 RDQKEGYQVPAARAAVVALRAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQHFFH 241

Query: 243 WLCILPWLRKTNTCPCCRFQLPTDDIFGEIQRLWEILVK 271
           W CILPWL K NTCP CRFQLPTDD+F EIQRLWEILVK
Sbjct: 242 WKCILPWLSKKNTCPFCRFQLPTDDVFSEIQRLWEILVK 276

[Close]

BLAST of Sed0022305 vs. TAIR 10
Match: AT5G08139.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-14
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 194 LPSVAVSGSG---AAVECVICKEEMYEGRDACQLPCEHLFHWLCILPWLRKTNTCPCCRF 253
           LP V + G       + C +CK+EM  G  A QLPC H +H  CI+PWL+  NTCP CR+
Sbjct: 292 LPVVLLEGENDDDGGLVCAVCKDEMNIGNKAVQLPCNHKYHSECIVPWLKVRNTCPVCRY 351

Query: 254 QLPTDD 257
           +LPTDD
Sbjct: 352 ELPTDD 357

[Close]

BLAST of Sed0022305 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-14
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 186 ASAVAVVELPSVAVSGSGAAVE---CVICKEEMYEGRDACQLPCEHLFHWLCILPWLRKT 245
           AS  A+  LP+V V+      E   C +C +E  +G D  Q+PC+H+FH  C+LPWL   
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 246 NTCPCCRFQLPTDD 257
           N+CP CRF+LPTDD
Sbjct: 251 NSCPVCRFELPTDD 264

[Close]

BLAST of Sed0022305 vs. TAIR 10
Match: AT5G60820.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.9e-14
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 205 AVECVICKEEMYEGRDACQLPCEHLFHWLCILPWLRKTNTCPCCRFQLPTD 256
           AV C +CKEEM  G++  +LPC H +H  CI+PWL   NTCP CRF+LP+D
Sbjct: 369 AVCCAVCKEEMIVGKEVAELPCRHKYHSECIVPWLGIRNTCPVCRFELPSD 419

[Close]

BLAST of Sed0022305 vs. TAIR 10
Match: AT5G64920.1 (COP1-interacting protein 8 )

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-13
Identity = 36/90 (40.00%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 174 GSCGGKARREVAASAVAVVELPSVAVSGSGAAVECVICKEEMYEGRDACQLPCEHLFHWL 233
           G  G +     A SA+  +E   V+ S     + C +CK+ M  G    +LPC H +H  
Sbjct: 223 GGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGD 282

Query: 234 CILPWLRKTNTCPCCRFQLPTDDIFGEIQR 264
           CI+PWL   N+CP CRFQL TDD   E +R
Sbjct: 283 CIVPWLGTRNSCPVCRFQLETDDAEYEEER 312

The following BLAST results are available for this feature:

BLAST of Sed0022305 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905798.1	3.4e-125	82.50	E3 ubiquitin-protein ligase SGR9, amyloplastic [Benincasa hispida]	[more]
XP_016899723.1	4.5e-125	81.07	PREDICTED: E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis melo]	[more]
XP_004137953.1	1.3e-124	80.71	E3 ubiquitin-protein ligase SGR9, amyloplastic [Cucumis sativus] >KGN58913.1 hyp...	[more]
XP_022145706.1	5.5e-123	81.36	E3 ubiquitin-protein ligase SGR9, amyloplastic [Momordica charantia]	[more]
KAG6596438.1	3.5e-122	84.23	E3 ubiquitin-protein ligase SGR9, amyloplastic, partial [Cucurbita argyrosperma ...	[more]

BLAST of Sed0022305 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GXF8	1.4e-68	54.48	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9P0P0	1.8e-15	50.70	E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1	[more]
Q3T0W3	2.3e-15	52.11	E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1	[more]
Q6GPV5	1.5e-14	55.56	E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1	[more]
Q9VE61	3.3e-14	48.15	E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN...	[more]

BLAST of Sed0022305 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DUS9	2.2e-125	81.07	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LAQ3	6.3e-125	80.71	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736610 P...	[more]
A0A6J1CX45	2.6e-123	81.36	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1F6V7	1.5e-121	83.87	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5A7TLA8	5.5e-121	81.11	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of Sed0022305 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02750.1	9.7e-70	54.48	RING/U-box superfamily protein	[more]
AT5G08139.1	2.0e-14	50.00	RING/U-box superfamily protein	[more]
AT3G19950.1	2.6e-14	47.30	RING/U-box superfamily protein	[more]
AT5G60820.1	9.9e-14	56.86	RING/U-box superfamily protein	[more]
AT5G64920.1	1.7e-13	40.00	COP1-interacting protein 8	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 208..248 e-value: 1.1E-5 score: 34.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 207..249 e-value: 9.1E-11 score: 41.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 208..249 score: 12.002429
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 177..255 e-value: 1.8E-17 score: 64.8
None	No IPR available	PANTHER	PTHR15710:SF67	E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC	coord: 3..274
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 3..274
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 202..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022305.1	Sed0022305.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0009501	amyloplast
molecular_function	GO:0061630	ubiquitin protein ligase activity