Sed0022233 (gene) Chayote v1

Overview


Name	Sed0022233
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG07: 1880368 .. 1881699 (-)
RNA-Seq Expression	Sed0022233
Synteny	Sed0022233

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGAATCCCTCCATTTCATCATCTTCCTCTCTCTTTTTTCTTGACATTCTAAAAACAAATTGGGAAAATAATTTGAAGAATTTTCCGTCGTTTTATTTGTTGTGGGTCTGTGTTGGATCTGTTAAACGGATTCTCGATGCTTCCATTTTTTGGAATTGAAACGAATTTCAATTATTGTTGAAGATTTTGGGGTTTTTTTTTTTTTTGTATAATTGATTTCTGTGATTATCAATGGAAGGTGGTCGCCGGAGAATTACGCTTTACGATCAGATGTTAGCGGTCGGCAACGGTAGAGATCTCACCGGAAGTTTGACGCTGAACGACGTTTTAACCATTCACAAGAGATCCTCGCCGAGCCCCTCGCCGGCGGTGAGACTAACCAGCCGGACTTTGCTTGATATCATAAGAGACGACGTCGGAAAATCCCCCGCCGGCAACAGAGACAGGAAATCTTGGAAGTTCTTGAGAGATCGCCTCCGTTTGAATCTCAGATCTCAAATTCCGCCGCCGATTTCGCTAAGTTTCGCCGCTTTTCCGACGGCGGAGATGTCGCCGGACGAAGAACCGGAATCTCCCACCCCTGCCCCGGCTCTCCGGCAGATCTCACGGCGGAGTTCGACGCGGTTCAACCATCACGCGCAGCCGTCTTTCGACGGCGACGAGTCGCCGACGGGCAACAACTCCGCCGCCGGAAGCGGCAGCCGGAGTCTCCTCCGGCCGCAAATGTCGCGGCGCAAGTCTAAGAGATTCTCCATTGGGCGGAGCGAGAGTTTCGAGGACTTGACGGAGCCGGCGAGTGAGGGCACGCGCCGCCTCTCCACGGCGCTGGCGGAGGAGAGATCGATGTCGGTGAGAGAAACGGCGGCGGCCCAAGAAGCCGCCGCCGACGAAGACTCAGAAGGAGAAGAGGCGAATTCGACGGCGGCGCCGGTGAGAATGTCACTGATGGAACTCCTAGAAGAGACGGACAGGCAAATGGGGGTCGAAGGGTCACGATACAGAATAGAAGAAGACGAAGATGAAGAAGTAAAACAGAAGGATGTAGAAGAAGAAGCCACCGCCGTACACGGCGGCGGTGGGACGGGACAAACCTGCTGCGTGTGTATGGAGCGTCATAAGGGCGCGGCTTTTATCCCGTGCGGTCACACCTTTTGTAGGCTCTGTTCGAAAGAACTTTTGGTCAACAGAGGGAACTGTCCACTTTGCAATGGCTACATTTTGGAGATTCTTGATATCTTCTAATTTTGTCAATCTTAGATTCAAACTTTGGATTTAAATGAAAATTAAACTTTTTTTCAACTTGTTACAATTTTATTTTTCCTTTATATGGC

mRNA sequence

CTTGAATCCCTCCATTTCATCATCTTCCTCTCTCTTTTTTCTTGACATTCTAAAAACAAATTGGGAAAATAATTTGAAGAATTTTCCGTCGTTTTATTTGTTGTGGGTCTGTGTTGGATCTGTTAAACGGATTCTCGATGCTTCCATTTTTTGGAATTGAAACGAATTTCAATTATTGTTGAAGATTTTGGGGTTTTTTTTTTTTTTGTATAATTGATTTCTGTGATTATCAATGGAAGGTGGTCGCCGGAGAATTACGCTTTACGATCAGATGTTAGCGGTCGGCAACGGTAGAGATCTCACCGGAAGTTTGACGCTGAACGACGTTTTAACCATTCACAAGAGATCCTCGCCGAGCCCCTCGCCGGCGGTGAGACTAACCAGCCGGACTTTGCTTGATATCATAAGAGACGACGTCGGAAAATCCCCCGCCGGCAACAGAGACAGGAAATCTTGGAAGTTCTTGAGAGATCGCCTCCGTTTGAATCTCAGATCTCAAATTCCGCCGCCGATTTCGCTAAGTTTCGCCGCTTTTCCGACGGCGGAGATGTCGCCGGACGAAGAACCGGAATCTCCCACCCCTGCCCCGGCTCTCCGGCAGATCTCACGGCGGAGTTCGACGCGGTTCAACCATCACGCGCAGCCGTCTTTCGACGGCGACGAGTCGCCGACGGGCAACAACTCCGCCGCCGGAAGCGGCAGCCGGAGTCTCCTCCGGCCGCAAATGTCGCGGCGCAAGTCTAAGAGATTCTCCATTGGGCGGAGCGAGAGTTTCGAGGACTTGACGGAGCCGGCGAGTGAGGGCACGCGCCGCCTCTCCACGGCGCTGGCGGAGGAGAGATCGATGTCGGTGAGAGAAACGGCGGCGGCCCAAGAAGCCGCCGCCGACGAAGACTCAGAAGGAGAAGAGGCGAATTCGACGGCGGCGCCGGTGAGAATGTCACTGATGGAACTCCTAGAAGAGACGGACAGGCAAATGGGGGTCGAAGGGTCACGATACAGAATAGAAGAAGACGAAGATGAAGAAGTAAAACAGAAGGATGTAGAAGAAGAAGCCACCGCCGTACACGGCGGCGGTGGGACGGGACAAACCTGCTGCGTGTGTATGGAGCGTCATAAGGGCGCGGCTTTTATCCCGTGCGGTCACACCTTTTGTAGGCTCTGTTCGAAAGAACTTTTGGTCAACAGAGGGAACTGTCCACTTTGCAATGGCTACATTTTGGAGATTCTTGATATCTTCTAATTTTGTCAATCTTAGATTCAAACTTTGGATTTAAATGAAAATTAAACTTTTTTTCAACTTGTTACAATTTTATTTTTCCTTTATATGGC

Coding sequence (CDS)

ATGGAAGGTGGTCGCCGGAGAATTACGCTTTACGATCAGATGTTAGCGGTCGGCAACGGTAGAGATCTCACCGGAAGTTTGACGCTGAACGACGTTTTAACCATTCACAAGAGATCCTCGCCGAGCCCCTCGCCGGCGGTGAGACTAACCAGCCGGACTTTGCTTGATATCATAAGAGACGACGTCGGAAAATCCCCCGCCGGCAACAGAGACAGGAAATCTTGGAAGTTCTTGAGAGATCGCCTCCGTTTGAATCTCAGATCTCAAATTCCGCCGCCGATTTCGCTAAGTTTCGCCGCTTTTCCGACGGCGGAGATGTCGCCGGACGAAGAACCGGAATCTCCCACCCCTGCCCCGGCTCTCCGGCAGATCTCACGGCGGAGTTCGACGCGGTTCAACCATCACGCGCAGCCGTCTTTCGACGGCGACGAGTCGCCGACGGGCAACAACTCCGCCGCCGGAAGCGGCAGCCGGAGTCTCCTCCGGCCGCAAATGTCGCGGCGCAAGTCTAAGAGATTCTCCATTGGGCGGAGCGAGAGTTTCGAGGACTTGACGGAGCCGGCGAGTGAGGGCACGCGCCGCCTCTCCACGGCGCTGGCGGAGGAGAGATCGATGTCGGTGAGAGAAACGGCGGCGGCCCAAGAAGCCGCCGCCGACGAAGACTCAGAAGGAGAAGAGGCGAATTCGACGGCGGCGCCGGTGAGAATGTCACTGATGGAACTCCTAGAAGAGACGGACAGGCAAATGGGGGTCGAAGGGTCACGATACAGAATAGAAGAAGACGAAGATGAAGAAGTAAAACAGAAGGATGTAGAAGAAGAAGCCACCGCCGTACACGGCGGCGGTGGGACGGGACAAACCTGCTGCGTGTGTATGGAGCGTCATAAGGGCGCGGCTTTTATCCCGTGCGGTCACACCTTTTGTAGGCTCTGTTCGAAAGAACTTTTGGTCAACAGAGGGAACTGTCCACTTTGCAATGGCTACATTTTGGAGATTCTTGATATCTTCTAA

Protein sequence

MEGGRRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHKRSSPSPSPAVRLTSRTLLDIIRDDVGKSPAGNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAEMSPDEEPESPTPAPALRQISRRSSTRFNHHAQPSFDGDESPTGNNSAAGSGSRSLLRPQMSRRKSKRFSIGRSESFEDLTEPASEGTRRLSTALAEERSMSVRETAAAQEAAADEDSEGEEANSTAAPVRMSLMELLEETDRQMGVEGSRYRIEEDEDEEVKQKDVEEEATAVHGGGGTGQTCCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEILDIF

Homology

[Close]

BLAST of Sed0022233 vs. NCBI nr
Match: KAA0026218.1 (nucleolin-like [Cucumis melo var. makuwa] >TYK30738.1 nucleolin-like [Cucumis melo var. makuwa])

HSP 1 Score: 449.1 bits (1154), Expect = 3.3e-122
Identity = 251/359 (69.92%), Postives = 280/359 (77.99%), Query Frame = 0


Query: 1   MEGGRRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHKRSSPSPSPAVRLTSRTLLDIIRD 60
           MEGGRRRITLYDQMLAV +GR+L    TLNDVLTI KR+SPSPSPAVRL  RTLLDIIRD
Sbjct: 1   MEGGRRRITLYDQMLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRD 60

Query: 61  DVGKSPAGNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAEMSPDEEPESPTP--- 120
           DVGKSP  NR+RKSWKFLRDRLRLNLRSQIPPP SL F  F +AEM P++E +SP P   
Sbjct: 61  DVGKSPVSNRERKSWKFLRDRLRLNLRSQIPPPNSLRFPGFTSAEMMPNDE-QSPEPTTT 120

Query: 121 -----APALRQISRRSSTRFNHHAQPSFD---GDESPTGNNSAA--GSGSRSLLRPQMSR 180
                AP+LRQISRR+STRFN    PS +    D SP  N++AA  G G RSLLRPQMSR
Sbjct: 121 AAVSAAPSLRQISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGGGGRSLLRPQMSR 180

Query: 181 RKSKRFSIGRSESFEDLTEPASEGTRRLSTALAEERSMSVRETAAAQEAA-------ADE 240
             S RFS+ RSESF DLTEPA EGTRRLS ALAEERSMS RE  AAQEAA        +E
Sbjct: 181 HNSTRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEAIADVEE 240

Query: 241 DSEGEEANSTAAPVRMSLMELLEETDRQMGVEGSRYRIEEDEDEEVKQKDVEEEATAVHG 300
             E +EA ST AP+RMSLM+LLEETDRQMG EGS YRIE++E+EE +++++E E T V G
Sbjct: 241 QEEEQEAESTPAPMRMSLMDLLEETDRQMGFEGSTYRIEDEEEEEEEEEEIENEVTTVCG 300

Query: 301 GGGTGQT---CCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEILDIF 337
           GGG G T   CCVCM RHKGAAFIPCGHTFCRLCS+EL V+RGNCPLCNG+ILEILDIF
Sbjct: 301 GGGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 358

[Close]

BLAST of Sed0022233 vs. NCBI nr
Match: XP_008458019.1 (PREDICTED: nucleolin-like [Cucumis melo])

HSP 1 Score: 448.4 bits (1152), Expect = 5.6e-122
Identity = 250/359 (69.64%), Postives = 281/359 (78.27%), Query Frame = 0


Query: 1   MEGGRRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHKRSSPSPSPAVRLTSRTLLDIIRD 60
           MEGGRRRITLYDQMLAV +GR+L    TLNDVLTI KR+SPSPSPAVRL  RTLLDIIRD
Sbjct: 1   MEGGRRRITLYDQMLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRD 60

Query: 61  DVGKSPAGNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAEMSPDEEPESPTP--- 120
           DVGKSP  NR+RKSWKFLRDRLRLNLRSQIPPP SL F  F +A+M P++E +SP P   
Sbjct: 61  DVGKSPVSNRERKSWKFLRDRLRLNLRSQIPPPNSLRFPGFTSADMMPNDE-QSPEPTTT 120

Query: 121 -----APALRQISRRSSTRFNHHAQPSFD---GDESPTGNNSAA--GSGSRSLLRPQMSR 180
                AP+LRQISRR+STRFN    PS +    D SP  N++AA  G+G RSLLRPQMSR
Sbjct: 121 AAVSAAPSLRQISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGAGGRSLLRPQMSR 180

Query: 181 RKSKRFSIGRSESFEDLTEPASEGTRRLSTALAEERSMSVRETAAAQEAA-------ADE 240
             S RFS+ RSESF DLTEPA EGTRRLS ALAEERSMS RE  AAQEAA        +E
Sbjct: 181 HNSTRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEAIADVEE 240

Query: 241 DSEGEEANSTAAPVRMSLMELLEETDRQMGVEGSRYRIEEDEDEEVKQKDVEEEATAVHG 300
             E +EA ST AP+RMSLM+LLEETDRQMG EGS YRIE++E+EE +++++E E T V G
Sbjct: 241 QEEEQEAESTPAPMRMSLMDLLEETDRQMGFEGSTYRIEDEEEEEEEEEEIENEVTTVCG 300

Query: 301 GGGTGQT---CCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEILDIF 337
           GGG G T   CCVCM RHKGAAFIPCGHTFCRLCS+EL V+RGNCPLCNG+ILEILDIF
Sbjct: 301 GGGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 358

[Close]

BLAST of Sed0022233 vs. NCBI nr
Match: XP_023522866.1 (chromo domain-containing protein cec-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 437.2 bits (1123), Expect = 1.3e-118
Identity = 255/363 (70.25%), Postives = 286/363 (78.79%), Query Frame = 0


Query: 1   MEGGRRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHKRSSPSPSPAVRLTSRTLLDIIRD 60
           MEGGRRRITLYDQMLAVG GR+LTG LTLNDVLT+HKR+SP+PSP VRL  RTLLDI+RD
Sbjct: 1   MEGGRRRITLYDQMLAVGEGRELTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGKSPA-GNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAEMSPDEE--PESPTP 120
           DVGKSPA GNR+RKSWKFLRDRLRLNLRSQIPPP SL FA F +AEM+ +EE  PES TP
Sbjct: 61  DVGKSPAVGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEESPESTTP 120

Query: 121 -----APALRQISRRSSTRFNHHAQPS---FDGDESPTGNNSA---AGSG---SRSLLRP 180
                 P LRQISRRSSTR + +   S    +  ESP  N+SA   AG+G   SRSLLRP
Sbjct: 121 VVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNDSASTIAGTGSRSSRSLLRP 180

Query: 181 QMSRRKSKRFSIGRSESFEDLTEPASEGTRRLSTALAEERSMSVRETAAAQEAA-----A 240
           QMSRR S R S+ RSESF DLTEP  EGTRRLS ALA ERSMS RET A QEAA     A
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAADAETTA 240

Query: 241 DEDSEGEEANS--TAAPVRMSLMELLEETDRQMGVEGSRYRIE---EDEDEEVKQKDVEE 300
           DED E  ++ +  TAAPVRMSLM+LLEETDRQMG EGSRY+IE   E+E+EE ++++ EE
Sbjct: 241 DEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEEEKEE 300

Query: 301 EATAVHGGGGTGQTCCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEIL 337
           E   V  GGG+ + CCVCM RHKGAAFIPCGHTFCRLCS+ELLV+RGNCPLCNG+ILEIL
Sbjct: 301 EVAVV--GGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGFILEIL 360

[Close]

BLAST of Sed0022233 vs. NCBI nr
Match: XP_023004831.1 (nucleolin-like [Cucurbita maxima])

HSP 1 Score: 432.2 bits (1110), Expect = 4.2e-117
Identity = 250/362 (69.06%), Postives = 285/362 (78.73%), Query Frame = 0


Query: 1   MEGGRRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHKRSSPSPSPAVRLTSRTLLDIIRD 60
           MEGGRRRITLYD+MLAVG+GR++TG LTLNDVLT+HKR+SP+PSP VRL  RTLLDI+RD
Sbjct: 1   MEGGRRRITLYDRMLAVGDGREVTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGKSP-AGNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAEMSPDEE--PESPTP 120
           DVGKSP AGNR+RKSWKFLRDRLRLNLRSQIPPP SL FA F +AEM+ +EE  PES TP
Sbjct: 61  DVGKSPAAGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEQSPESTTP 120

Query: 121 -----APALRQISRRSSTRFNHHAQPS---FDGDESPTGNNS---AAGSG---SRSLLRP 180
                 P LRQISRR+STR + +   S    +  ESP  NNS    AG+G   SRSLLRP
Sbjct: 121 VVAAAVPVLRQISRRNSTRLSQNIPTSPEATNSGESPENNNSDSTIAGTGSRSSRSLLRP 180

Query: 181 QMSRRKSKRFSIGRSESFEDLTEPASEGTRRLSTALAEERSMSVRETAAAQEAA-----A 240
           QMSRR S R S+ RSESF DLTEP  EGTRRLS ALA ERSMS RET A QEAA     A
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAADAETTA 240

Query: 241 DEDSEGEEANS--TAAPVRMSLMELLEETDRQMGVEGSRYRIEE--DEDEEVKQKDVEEE 300
           +ED E  ++ +  TAAPVRMSLM+LLEETDRQMG EGSRY+IE+  +E+EE +++D E+E
Sbjct: 241 NEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEDEEKE 300

Query: 301 ATAVHGGGGTGQTCCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEILD 337
                 GGG+ Q CCVCM RHKGAAFIPCGHTFCRLCS+ELLV+RGNCPLCNG+ILEILD
Sbjct: 301 DEVAVVGGGSEQKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGFILEILD 360

[Close]

BLAST of Sed0022233 vs. NCBI nr
Match: XP_022960262.1 (chromo domain-containing protein cec-1-like [Cucurbita moschata] >KAG7025412.1 hypothetical protein SDJN02_11907, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 432.2 bits (1110), Expect = 4.2e-117
Identity = 251/364 (68.96%), Postives = 281/364 (77.20%), Query Frame = 0


Query: 1   MEGGRRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHKRSSPSPSPAVRLTSRTLLDIIRD 60
           MEGGRRRITLYDQMLAVG+GR+LTG LTLNDVLT+HKR+SP+PSP VRL  RTLLDI+RD
Sbjct: 1   MEGGRRRITLYDQMLAVGDGRELTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGKSPA-GNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAEMSPDEE--PESPTP 120
           DVGKSPA GNR+RKSWKFLRDRLRLNLRSQIPPP SL FA F +AEM+ +EE  PES TP
Sbjct: 61  DVGKSPAVGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEESPESTTP 120

Query: 121 -----APALRQISRRSSTRFNHHAQPS---FDGDESPTGNNS------AAGSGSRSLLRP 180
                 P LRQISRRSSTR + +   S    +  ESP  NNS           SRSLLRP
Sbjct: 121 VVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNNSDSTIADTGSRSSRSLLRP 180

Query: 181 QMSRRKSKRFSIGRSESFEDLTEPASEGTRRLSTALAEERSMSVRETAAAQEAA-----A 240
           QMSRR S R S+ RSESF DLTEP  EGTR LS ALA ERSMS RET A QEAA     A
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRLLSAALAMERSMSARETVATQEAADAETTA 240

Query: 241 DEDSEGEEANS--TAAPVRMSLMELLEETDRQMGVEGSRYRI----EEDEDEEVKQKDVE 300
           DED E  ++ +  TAAPVRMSLM+LLEETDRQMG EGSRY+I    EE+E+EE ++++ E
Sbjct: 241 DEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEEEEKE 300

Query: 301 EEATAVHGGGGTGQTCCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEI 337
           EE   V  GGG+ + CCVCM RHKGAAFIPCGHTFCRLCS+ELLV+RGNCPLCNG+ILEI
Sbjct: 301 EEVAVV--GGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGFILEI 360

[Close]

BLAST of Sed0022233 vs. ExPASy Swiss-Prot
Match: P10862 (Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RAD18 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.2e-04
Identity = 19/38 (50.00%), Postives = 23/38 (60.53%), Query Frame = 0


Query: 288 CCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLC 326
           C +C +  K     PCGHTFC LC +  L N+ NCPLC
Sbjct: 28  CHICKDFLKVPVLTPCGHTFCSLCIRTHLNNQPNCPLC 65

[Close]

BLAST of Sed0022233 vs. ExPASy Swiss-Prot
Match: Q6FPI4 (Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=RAD18 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.8e-04
Identity = 18/38 (47.37%), Postives = 21/38 (55.26%), Query Frame = 0


Query: 288 CCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLC 326
           C +C +  K     PCGHTFC LC +  L N   CPLC
Sbjct: 27  CHICKDFLKNPVLTPCGHTFCSLCIRGYLSNEPKCPLC 64

[Close]

BLAST of Sed0022233 vs. ExPASy TrEMBL
Match: A0A5D3E4J3 (Nucleolin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00730 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.6e-122
Identity = 251/359 (69.92%), Postives = 280/359 (77.99%), Query Frame = 0


Query: 1   MEGGRRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHKRSSPSPSPAVRLTSRTLLDIIRD 60
           MEGGRRRITLYDQMLAV +GR+L    TLNDVLTI KR+SPSPSPAVRL  RTLLDIIRD
Sbjct: 1   MEGGRRRITLYDQMLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRD 60

Query: 61  DVGKSPAGNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAEMSPDEEPESPTP--- 120
           DVGKSP  NR+RKSWKFLRDRLRLNLRSQIPPP SL F  F +AEM P++E +SP P   
Sbjct: 61  DVGKSPVSNRERKSWKFLRDRLRLNLRSQIPPPNSLRFPGFTSAEMMPNDE-QSPEPTTT 120

Query: 121 -----APALRQISRRSSTRFNHHAQPSFD---GDESPTGNNSAA--GSGSRSLLRPQMSR 180
                AP+LRQISRR+STRFN    PS +    D SP  N++AA  G G RSLLRPQMSR
Sbjct: 121 AAVSAAPSLRQISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGGGGRSLLRPQMSR 180

Query: 181 RKSKRFSIGRSESFEDLTEPASEGTRRLSTALAEERSMSVRETAAAQEAA-------ADE 240
             S RFS+ RSESF DLTEPA EGTRRLS ALAEERSMS RE  AAQEAA        +E
Sbjct: 181 HNSTRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEAIADVEE 240

Query: 241 DSEGEEANSTAAPVRMSLMELLEETDRQMGVEGSRYRIEEDEDEEVKQKDVEEEATAVHG 300
             E +EA ST AP+RMSLM+LLEETDRQMG EGS YRIE++E+EE +++++E E T V G
Sbjct: 241 QEEEQEAESTPAPMRMSLMDLLEETDRQMGFEGSTYRIEDEEEEEEEEEEIENEVTTVCG 300

Query: 301 GGGTGQT---CCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEILDIF 337
           GGG G T   CCVCM RHKGAAFIPCGHTFCRLCS+EL V+RGNCPLCNG+ILEILDIF
Sbjct: 301 GGGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 358

[Close]

BLAST of Sed0022233 vs. ExPASy TrEMBL
Match: A0A1S3C6E1 (nucleolin-like OS=Cucumis melo OX=3656 GN=LOC103497559 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.7e-122
Identity = 250/359 (69.64%), Postives = 281/359 (78.27%), Query Frame = 0


Query: 1   MEGGRRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHKRSSPSPSPAVRLTSRTLLDIIRD 60
           MEGGRRRITLYDQMLAV +GR+L    TLNDVLTI KR+SPSPSPAVRL  RTLLDIIRD
Sbjct: 1   MEGGRRRITLYDQMLAVSDGRELASGFTLNDVLTIQKRASPSPSPAVRLHGRTLLDIIRD 60

Query: 61  DVGKSPAGNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAEMSPDEEPESPTP--- 120
           DVGKSP  NR+RKSWKFLRDRLRLNLRSQIPPP SL F  F +A+M P++E +SP P   
Sbjct: 61  DVGKSPVSNRERKSWKFLRDRLRLNLRSQIPPPNSLRFPGFTSADMMPNDE-QSPEPTTT 120

Query: 121 -----APALRQISRRSSTRFNHHAQPSFD---GDESPTGNNSAA--GSGSRSLLRPQMSR 180
                AP+LRQISRR+STRFN    PS +    D SP  N++AA  G+G RSLLRPQMSR
Sbjct: 121 AAVSAAPSLRQISRRNSTRFNPSVPPSSEATNSDASPDNNSAAAASGAGGRSLLRPQMSR 180

Query: 181 RKSKRFSIGRSESFEDLTEPASEGTRRLSTALAEERSMSVRETAAAQEAA-------ADE 240
             S RFS+ RSESF DLTEPA EGTRRLS ALAEERSMS RE  AAQEAA        +E
Sbjct: 181 HNSTRFSVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEAIADVEE 240

Query: 241 DSEGEEANSTAAPVRMSLMELLEETDRQMGVEGSRYRIEEDEDEEVKQKDVEEEATAVHG 300
             E +EA ST AP+RMSLM+LLEETDRQMG EGS YRIE++E+EE +++++E E T V G
Sbjct: 241 QEEEQEAESTPAPMRMSLMDLLEETDRQMGFEGSTYRIEDEEEEEEEEEEIENEVTTVCG 300

Query: 301 GGGTGQT---CCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEILDIF 337
           GGG G T   CCVCM RHKGAAFIPCGHTFCRLCS+EL V+RGNCPLCNG+ILEILDIF
Sbjct: 301 GGGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 358

[Close]

BLAST of Sed0022233 vs. ExPASy TrEMBL
Match: A0A6J1KT79 (nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111498015 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 2.0e-117
Identity = 250/362 (69.06%), Postives = 285/362 (78.73%), Query Frame = 0


Query: 1   MEGGRRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHKRSSPSPSPAVRLTSRTLLDIIRD 60
           MEGGRRRITLYD+MLAVG+GR++TG LTLNDVLT+HKR+SP+PSP VRL  RTLLDI+RD
Sbjct: 1   MEGGRRRITLYDRMLAVGDGREVTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGKSP-AGNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAEMSPDEE--PESPTP 120
           DVGKSP AGNR+RKSWKFLRDRLRLNLRSQIPPP SL FA F +AEM+ +EE  PES TP
Sbjct: 61  DVGKSPAAGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEQSPESTTP 120

Query: 121 -----APALRQISRRSSTRFNHHAQPS---FDGDESPTGNNS---AAGSG---SRSLLRP 180
                 P LRQISRR+STR + +   S    +  ESP  NNS    AG+G   SRSLLRP
Sbjct: 121 VVAAAVPVLRQISRRNSTRLSQNIPTSPEATNSGESPENNNSDSTIAGTGSRSSRSLLRP 180

Query: 181 QMSRRKSKRFSIGRSESFEDLTEPASEGTRRLSTALAEERSMSVRETAAAQEAA-----A 240
           QMSRR S R S+ RSESF DLTEP  EGTRRLS ALA ERSMS RET A QEAA     A
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRRLSAALAMERSMSARETVATQEAADAETTA 240

Query: 241 DEDSEGEEANS--TAAPVRMSLMELLEETDRQMGVEGSRYRIEE--DEDEEVKQKDVEEE 300
           +ED E  ++ +  TAAPVRMSLM+LLEETDRQMG EGSRY+IE+  +E+EE +++D E+E
Sbjct: 241 NEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEDEEKE 300

Query: 301 ATAVHGGGGTGQTCCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEILD 337
                 GGG+ Q CCVCM RHKGAAFIPCGHTFCRLCS+ELLV+RGNCPLCNG+ILEILD
Sbjct: 301 DEVAVVGGGSEQKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGFILEILD 360

[Close]

BLAST of Sed0022233 vs. ExPASy TrEMBL
Match: A0A6J1H6Y3 (chromo domain-containing protein cec-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461059 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 2.0e-117
Identity = 251/364 (68.96%), Postives = 281/364 (77.20%), Query Frame = 0


Query: 1   MEGGRRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHKRSSPSPSPAVRLTSRTLLDIIRD 60
           MEGGRRRITLYDQMLAVG+GR+LTG LTLNDVLT+HKR+SP+PSP VRL  RTLLDI+RD
Sbjct: 1   MEGGRRRITLYDQMLAVGDGRELTGGLTLNDVLTVHKRASPNPSPEVRLNGRTLLDILRD 60

Query: 61  DVGKSPA-GNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAEMSPDEE--PESPTP 120
           DVGKSPA GNR+RKSWKFLRDRLRLNLRSQIPPP SL FA F +AEM+ +EE  PES TP
Sbjct: 61  DVGKSPAVGNRERKSWKFLRDRLRLNLRSQIPPPNSLRFAVFSSAEMTSNEEESPESTTP 120

Query: 121 -----APALRQISRRSSTRFNHHAQPS---FDGDESPTGNNS------AAGSGSRSLLRP 180
                 P LRQISRRSSTR + +   S    +  ESP  NNS           SRSLLRP
Sbjct: 121 VVAAAVPVLRQISRRSSTRLSQNIPTSPEATNSGESPENNNSDSTIADTGSRSSRSLLRP 180

Query: 181 QMSRRKSKRFSIGRSESFEDLTEPASEGTRRLSTALAEERSMSVRETAAAQEAA-----A 240
           QMSRR S R S+ RSESF DLTEP  EGTR LS ALA ERSMS RET A QEAA     A
Sbjct: 181 QMSRRNSTRRSLERSESFTDLTEPVHEGTRLLSAALAMERSMSARETVATQEAADAETTA 240

Query: 241 DEDSEGEEANS--TAAPVRMSLMELLEETDRQMGVEGSRYRI----EEDEDEEVKQKDVE 300
           DED E  ++ +  TAAPVRMSLM+LLEETDRQMG EGSRY+I    EE+E+EE ++++ E
Sbjct: 241 DEDDEEADSTAVETAAPVRMSLMDLLEETDRQMGFEGSRYKIEDEVEEEEEEEEEEEEKE 300

Query: 301 EEATAVHGGGGTGQTCCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEI 337
           EE   V  GGG+ + CCVCM RHKGAAFIPCGHTFCRLCS+ELLV+RGNCPLCNG+ILEI
Sbjct: 301 EEVAVV--GGGSERKCCVCMVRHKGAAFIPCGHTFCRLCSRELLVSRGNCPLCNGFILEI 360

[Close]

BLAST of Sed0022233 vs. ExPASy TrEMBL
Match: A0A0A0K6R9 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G342770 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 3.3e-112
Identity = 244/359 (67.97%), Postives = 269/359 (74.93%), Query Frame = 0


Query: 1   MEGGRRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHKRSSPSPSPAVRLTSRTLLDIIRD 60
           MEGGRRRITLYDQMLAV +GRDL G  TLNDVL I KR+ PS SPAVRL  RTLLDIIRD
Sbjct: 1   MEGGRRRITLYDQMLAVSDGRDLAGGFTLNDVLAIQKRALPSSSPAVRLHGRTLLDIIRD 60

Query: 61  DVGKSPAGNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAE-MSPDEEPESPT--- 120
           DVGKSP  NR+R SWKF RDRLRL++RSQIPP  SL F    +AE MS DE    PT   
Sbjct: 61  DVGKSPVSNRERTSWKFFRDRLRLSIRSQIPPSNSLRFPGLTSAEMMSNDEHSPEPTTTA 120

Query: 121 ---PAPALRQISRRSSTRFNHHAQPSFD---GDESPTGNNSAA--GSGSRSLLRPQMSRR 180
               AP+LRQISRR+STR N   QPS +    + SP  N++AA  GSG RSLLRPQMSR 
Sbjct: 121 AVSAAPSLRQISRRNSTRLNPSVQPSSEATNSNASPDNNSAAAASGSGGRSLLRPQMSRH 180

Query: 181 KSKRFSIGRSESFEDLTEPASEGTRRLSTALAEERSMSVRETAAAQEAA-----ADEDSE 240
            S RFS+ RSESF DLTEP  EGTRRLS ALAEERSMS RE   AQEAA      DE+ +
Sbjct: 181 NSTRFSVERSESFTDLTEPTREGTRRLSAALAEERSMSAREAVTAQEAADAEATVDEEEQ 240

Query: 241 GEE--ANSTAAPVRMSLMELLEETDRQMGVEGSRYRIE-EDEDEEVKQKDVEEEATAVHG 300
            +E  A ST APVRMSLM+LLEETDRQMG EGS YRIE EDE+EE++     E +T V G
Sbjct: 241 QQEQVAESTPAPVRMSLMDLLEETDRQMGFEGSTYRIEDEDEEEEIE----NEVSTTVCG 300

Query: 301 GGGTGQT---CCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEILDIF 337
           GGG+G T   CCVCM RHKGAAFIPCGHTFCRLCS+EL V+RGNCPLCNG+ILEILDIF
Sbjct: 301 GGGSGGTEPHCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 355

[Close]

BLAST of Sed0022233 vs. TAIR 10
Match: AT3G07120.1 (RING/U-box superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-39
Identity = 137/358 (38.27%), Postives = 181/358 (50.56%), Query Frame = 0


Query: 29  LNDVLTIHKRSSPSPSPAV-------RLTSRTLLDIIRDDVGKSPAGNRDRKSWKFLRDR 88
           L   + I   S PSP P         R TS+TL DIIR++  K   G++DR +W+  R++
Sbjct: 20  LGGEILIEPPSLPSPPPLPSKSLVPHRPTSQTLFDIIREEYAKE--GHKDRTTWQIFREK 79

Query: 89  LRLNLRSQ--------------IPPP--ISLSFAAFPTAEMSPD---EEPESPTPAPALR 148
           LRL                   IP P  I  +F +        D     P S  P  + R
Sbjct: 80  LRLKRTGSAWTSSLHIPASDILIPNPKHIGTAFRSHSAGLNIRDLVHAIPMSDPPGSSGR 139

Query: 149 -QISRRSSTRFNHHAQPSFDGDESPTGNNSAAGSGSRSLLRPQMSRRKSKRFSIGRSESF 208
              +R SS R      P    D+SP  +    G  SRS  +PQ+SR  S R         
Sbjct: 140 AMFTRGSSMRVGSSKNP----DDSPDISVLEDGPPSRS-FKPQLSRHDSVR--------- 199

Query: 209 EDLTEPASEGTRRLS-TALAEERSMSVRETAAAQEAA----------ADEDSEGEE---- 268
            D +E      RR       EER MS RE  AAQEAA           DED + EE    
Sbjct: 200 -DHSEGEENNRRRHPIVTFVEERQMSAREAVAAQEAAEAEAAAAGGSEDEDDDDEEDDSG 259

Query: 269 ------ANSTAAPVR-MSLMELLEETDRQMGVEGSRYRIEEDED-EEVKQKDVEEEATAV 328
                 ++S + P + MSLM+LLEETDRQMG+ GSRY ++EDE+ EE ++ +  EE    
Sbjct: 260 ETEEMKSSSASEPKQTMSLMDLLEETDRQMGLTGSRYAMDEDEEYEEDEEDENNEEEGDS 319

Query: 329 HGGGGTGQTCCVCMERHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEILDIF 337
           HGGG    +CCVCM + KGA+F PCGHTFC+LCSKEL+  +G+CP+C+ ++LE L+IF
Sbjct: 320 HGGGEGELSCCVCMVKIKGASFTPCGHTFCKLCSKELMAQKGHCPVCSSFVLEFLEIF 360

[Close]

BLAST of Sed0022233 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein )

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-30
Identity = 119/343 (34.69%), Postives = 161/343 (46.94%), Query Frame = 0


Query: 1   MEGG-RRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHK-RSSP---SPSPAVRLTSRTLL 60
           M+GG R R+TL D+M  V + R     LTL  +L   K R+SP   SP P+   ++R+L+
Sbjct: 4   MDGGDRLRVTLLDRMSTVESSR---SCLTLEAILMADKNRTSPQILSPPPSRSQSNRSLV 63

Query: 61  DIIRDDVGKSPAGNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAEMSPDEEPESP 120
           ++++    +    +RD+ +WK LR++LRL     +               +S +  P   
Sbjct: 64  EVMQ----REHRHSRDKTAWKSLREKLRLKRNGSV--------------WISSNSIPSLD 123

Query: 121 TPAPALRQISRRSSTRFNHHAQPSFDGDESPTGNNSAAGSGSRSLLRPQMSRRKSKRFSI 180
           TP P    +S +                 S +GN                          
Sbjct: 124 TPIPNRDNVSHQLGFLL------------SNSGN-------------------------- 183

Query: 181 GRSESFEDLTEPAS--EGTRRLSTALAEERSMSVRETAAAQEAAADEDSEGEEANSTAAP 240
                   +TE AS  EG  RL   LAEER++S RE    +E  A+ + E         P
Sbjct: 184 --------VTEEASSVEGRIRLGAVLAEERALSARE----EETPAEREVE---------P 243

Query: 241 VRMSLMELLEETDRQMGVEGSRYRIEEDEDEEVKQKDVEEEATAVHGGGGTGQTCCVCME 300
            RMSLMELLEE + QM    S   ++ + +EEV      E             +CCVCM 
Sbjct: 244 ARMSLMELLEENEGQM----SFVSVDGEAEEEVAAVTAAE------------ISCCVCMV 250

Query: 301 RHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEILDIF 337
           R KGAAFIPCGHTFCRLCS+EL V RGNCPLCN  ILE+LD+F
Sbjct: 304 RSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250

[Close]

BLAST of Sed0022233 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein )

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-30
Identity = 119/343 (34.69%), Postives = 161/343 (46.94%), Query Frame = 0


Query: 1   MEGG-RRRITLYDQMLAVGNGRDLTGSLTLNDVLTIHK-RSSP---SPSPAVRLTSRTLL 60
           M+GG R R+TL D+M  V + R     LTL  +L   K R+SP   SP P+   ++R+L+
Sbjct: 4   MDGGDRLRVTLLDRMSTVESSR---SCLTLEAILMADKNRTSPQILSPPPSRSQSNRSLV 63

Query: 61  DIIRDDVGKSPAGNRDRKSWKFLRDRLRLNLRSQIPPPISLSFAAFPTAEMSPDEEPESP 120
           ++++    +    +RD+ +WK LR++LRL     +               +S +  P   
Sbjct: 64  EVMQ----REHRHSRDKTAWKSLREKLRLKRNGSV--------------WISSNSIPSLD 123

Query: 121 TPAPALRQISRRSSTRFNHHAQPSFDGDESPTGNNSAAGSGSRSLLRPQMSRRKSKRFSI 180
           TP P    +S +                 S +GN                          
Sbjct: 124 TPIPNRDNVSHQLGFLL------------SNSGN-------------------------- 183

Query: 181 GRSESFEDLTEPAS--EGTRRLSTALAEERSMSVRETAAAQEAAADEDSEGEEANSTAAP 240
                   +TE AS  EG  RL   LAEER++S RE    +E  A+ + E         P
Sbjct: 184 --------VTEEASSVEGRIRLGAVLAEERALSARE----EETPAEREVE---------P 243

Query: 241 VRMSLMELLEETDRQMGVEGSRYRIEEDEDEEVKQKDVEEEATAVHGGGGTGQTCCVCME 300
            RMSLMELLEE + QM    S   ++ + +EEV      E             +CCVCM 
Sbjct: 244 ARMSLMELLEENEGQM----SFVSVDGEAEEEVAAVTAAE------------ISCCVCMV 250

Query: 301 RHKGAAFIPCGHTFCRLCSKELLVNRGNCPLCNGYILEILDIF 337
           R KGAAFIPCGHTFCRLCS+EL V RGNCPLCN  ILE+LD+F
Sbjct: 304 RSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250

[Close]

BLAST of Sed0022233 vs. TAIR 10
Match: AT4G13100.2 (RING/U-box superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 3.4e-24
Identity = 70/141 (49.65%), Postives = 86/141 (60.99%), Query Frame = 0


Query: 202 ERSMSVRETAAAQEAAADEDSE---GEEANSTAAPVRMSLMELLEETDRQMGVEGSRYRI 261
           E + S R+ + A E AA+ +     G    +   P RMSLMELLE+ D      G  Y +
Sbjct: 133 ETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPRMSLMELLEDND------GHMYEL 192

Query: 262 EEDEDEEVKQKDVEE---EATAVHGGGGTGQTCCVCMERHKGAAFIPCGHTFCRLCSKEL 321
              ++ EV+ +D  +   EA AV G    G  CCVCM R KGAAFIPCGHTFCRLCS+EL
Sbjct: 193 SARDEVEVEGRDGCDGGGEAVAVTGAAELG--CCVCMVRSKGAAFIPCGHTFCRLCSREL 252

Query: 322 LVNRGNCPLCNGYILEILDIF 337
            V RGNCPLCN  IL++LDIF
Sbjct: 253 WVQRGNCPLCNTAILQVLDIF 265

[Close]

BLAST of Sed0022233 vs. TAIR 10
Match: AT4G13100.3 (RING/U-box superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 3.4e-24
Identity = 70/141 (49.65%), Postives = 86/141 (60.99%), Query Frame = 0


Query: 202 ERSMSVRETAAAQEAAADEDSE---GEEANSTAAPVRMSLMELLEETDRQMGVEGSRYRI 261
           E + S R+ + A E AA+ +     G    +   P RMSLMELLE+ D      G  Y +
Sbjct: 124 ETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPRMSLMELLEDND------GHMYEL 183

Query: 262 EEDEDEEVKQKDVEE---EATAVHGGGGTGQTCCVCMERHKGAAFIPCGHTFCRLCSKEL 321
              ++ EV+ +D  +   EA AV G    G  CCVCM R KGAAFIPCGHTFCRLCS+EL
Sbjct: 184 SARDEVEVEGRDGCDGGGEAVAVTGAAELG--CCVCMVRSKGAAFIPCGHTFCRLCSREL 243

Query: 322 LVNRGNCPLCNGYILEILDIF 337
            V RGNCPLCN  IL++LDIF
Sbjct: 244 WVQRGNCPLCNTAILQVLDIF 256

The following BLAST results are available for this feature:

BLAST of Sed0022233 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0026218.1	3.3e-122	69.92	nucleolin-like [Cucumis melo var. makuwa] >TYK30738.1 nucleolin-like [Cucumis me...	[more]
XP_008458019.1	5.6e-122	69.64	PREDICTED: nucleolin-like [Cucumis melo]	[more]
XP_023522866.1	1.3e-118	70.25	chromo domain-containing protein cec-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023004831.1	4.2e-117	69.06	nucleolin-like [Cucurbita maxima]	[more]
XP_022960262.1	4.2e-117	68.96	chromo domain-containing protein cec-1-like [Cucurbita moschata] >KAG7025412.1 h...	[more]

BLAST of Sed0022233 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10862	2.2e-04	50.00	Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Saccharomyces cerevi...	[more]
Q6FPI4	3.8e-04	47.37	Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida glabrata (st...	[more]

BLAST of Sed0022233 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E4J3	1.6e-122	69.92	Nucleolin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00730...	[more]
A0A1S3C6E1	2.7e-122	69.64	nucleolin-like OS=Cucumis melo OX=3656 GN=LOC103497559 PE=4 SV=1	[more]
A0A6J1KT79	2.0e-117	69.06	nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111498015 PE=4 SV=1	[more]
A0A6J1H6Y3	2.0e-117	68.96	chromo domain-containing protein cec-1-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A0A0K6R9	3.3e-112	67.97	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G342770 P...	[more]

BLAST of Sed0022233 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07120.1	1.3e-39	38.27	RING/U-box superfamily protein	[more]
AT3G25030.1	1.1e-30	34.69	RING/U-box superfamily protein	[more]
AT3G25030.2	1.1e-30	34.69	RING/U-box superfamily protein	[more]
AT4G13100.2	3.4e-24	49.65	RING/U-box superfamily protein	[more]
AT4G13100.3	3.4e-24	49.65	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 288..325 e-value: 3.7E-6 score: 36.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 288..326 score: 11.589345
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 286..329 e-value: 4.3E-11 score: 42.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..230
None	No IPR available	PANTHER	PTHR46629	OS01G0917900 PROTEIN	coord: 4..336
None	No IPR available	PANTHER	PTHR46629:SF13	OS01G0917900 PROTEIN	coord: 4..336
None	No IPR available	CDD	cd16449	RING-HC	coord: 288..325 e-value: 3.49701E-11 score: 55.5513
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 287..332
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 258..336 e-value: 1.5E-13 score: 52.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022233.1	Sed0022233.1	mRNA