Sed0022191 (gene) Chayote v1

Overview


Name	Sed0022191
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Heavy metal-associated domain containing protein
Location	LG06: 43147406 .. 43149141 (-)
RNA-Seq Expression	Sed0022191
Synteny	Sed0022191

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCACAAAGTCTTTGCGGAAAGCAGCTGTCATTGAGAAACGAACCATCTTTGTCAACTATTTCACAGCTTACCCTTTTATTTTACTTATCTTCCTTTTCCCTTCTCATTTTCCCATCCACTTAAAAAAAAAAACTTTTCTCAATCCCATCGGCCATGGCGGAGCGCGGCGGCGTTTGACCGGAGCATGGCGGAGCGGGGCAAGAAGAAGGCGGCGCCGCCCGGAATCGGAGTTCGCAAGCAAAAGATTTTCCCCCATGCTTCTAGTCTCGCCTCCATCGAATCCTTATCTCTGCCTCTTGTCTCTGCTTTTTCTCTTTATCTCCACTTTTTCTTTTCTTTTTTTTTAATAATAAAAGTGTTTTTTTTTTTTTCTTTTTTTGCTGAAATTAGCTTTTTATTGTTGTTGATTTTTCAGGTTCAGGAAATTGTGTTGACGGCTGATATTGGTTGTTCTGGATGTCAGAAAAAGCTTTCTAATATTCTTTCCAAAATGAATGGTGAGTTTCTTGTGGGAATTTGATTCCATGTTTTCTTTTATTTTTCAATGGTAATGGTTCTTCCCCCATTTGGGTTAAAATAATAATAATAATAATAATTCCAGCTTCACCCCCATTACATATTTGAGAAATAGTCTGGACTAAAAGATAGTAATTAATTGGGGAAAATAGTATTTTGCTCATGAGCTTTTTTATATATATATATTGCATGAACTTTAAAGATACCATTTTATTTCTTAAATTTTGACGTATTTTAGTAACTTTTAAAAGTTTAATTTTAGTCTTATTTGAATTTTATTCCATTTCAATTCTTAAAATTAAAAAACAAATAATAAAAAACAAGAAACTTAATATACTTAAAAAGTGATCCTTATATTTATTATATATATAGTCTTTAAAAATAGGTTCGCAGGTTGTATTTGATCGAGGAAGAACTAATTCCTTATAATATTGACTTCAAATTTATAATAGGGTCCAATTTTATTTCTATTCTTTTTTGTAAAAGTAAAAGGTCCAACATTTATACAAATTTAGGAACCCAAATGGCATAAAATTTAAAATTAGTTTATGAATTAAAATTGATTTTTTTTAAAAAAATTAAAATTAAAATAGAACAAAGATTAAACTTCAGTACCAAAAAAGAAAGAAAGATATTTTACATTAATTAATTTTACAATTAAGCTCGTTGTTCTAGTACAAATTAAAAGAAGAAAGCATAAGTGTTCTCAATTTATACGAGAGTCAAATCCCGATTTCTATAATTGAAGTGGTGATTGTGGCGTTGAAGTGAACCACTGCCCAACAATTAAGCTCGTTTATACTTTGCCATCAATAGCCATTTCTAGAAGATGGTTTTTTTTTTTTTTTTTTTTTCTTATAGATAATGTTAAAGAGGTTTATGAATGATTTTTTGGTTTTGGGTACAGATACAGAGTCTGTGGTGGTGAATTTATTGGATAAAAAAGTGATATTGACGCGAAGATTGCAGAATCCATCCACGTGCAACGATTCTCCAAGCAGAGTTTCAAGGATCAAGAGATTGCTTGGTTCTTCTTTCAGATAATTGTGAGGAATATTGTGATATATATTTGAATATTTTCAGTCATGTTCGTTCGTATATAAATAAATAATTACATTGTTTCTTGTTCAAAATCAATGAAAGAGAGCTTTAGAGATATTGCCTTTTTGCGGGACTTTTTTTAGAGAATATTATTGAATAATTTGAGTTAAATTACAAA

mRNA sequence

GGCACAAAGTCTTTGCGGAAAGCAGCTGTCATTGAGAAACGAACCATCTTTGTCAACTATTTCACAGCTTACCCTTTTATTTTACTTATCTTCCTTTTCCCTTCTCATTTTCCCATCCACTTAAAAAAAAAAACTTTTCTCAATCCCATCGGCCATGGCGGAGCGCGGCGGCGTTTGACCGGAGCATGGCGGAGCGGGGCAAGAAGAAGGCGGCGCCGCCCGGAATCGGAGTTCGCAAGCAAAAGATTTTCCCCCATGCTTCTAGTCTCGCCTCCATCGAATCCTTATCTCTGCCTCTTGTTCAGGAAATTGTGTTGACGGCTGATATTGGTTGTTCTGGATGTCAGAAAAAGCTTTCTAATATTCTTTCCAAAATGAATGATACAGAGTCTGTGGTGGTGAATTTATTGGATAAAAAAGTGATATTGACGCGAAGATTGCAGAATCCATCCACGTGCAACGATTCTCCAAGCAGAGTTTCAAGGATCAAGAGATTGCTTGGTTCTTCTTTCAGATAATTGTGAGGAATATTGTGATATATATTTGAATATTTTCAGTCATGTTCGTTCGTATATAAATAAATAATTACATTGTTTCTTGTTCAAAATCAATGAAAGAGAGCTTTAGAGATATTGCCTTTTTGCGGGACTTTTTTTAGAGAATATTATTGAATAATTTGAGTTAAATTACAAA

Coding sequence (CDS)

ATGGCGGAGCGGGGCAAGAAGAAGGCGGCGCCGCCCGGAATCGGAGTTCGCAAGCAAAAGATTTTCCCCCATGCTTCTAGTCTCGCCTCCATCGAATCCTTATCTCTGCCTCTTGTTCAGGAAATTGTGTTGACGGCTGATATTGGTTGTTCTGGATGTCAGAAAAAGCTTTCTAATATTCTTTCCAAAATGAATGATACAGAGTCTGTGGTGGTGAATTTATTGGATAAAAAAGTGATATTGACGCGAAGATTGCAGAATCCATCCACGTGCAACGATTCTCCAAGCAGAGTTTCAAGGATCAAGAGATTGCTTGGTTCTTCTTTCAGATAA

Protein sequence

MAERGKKKAAPPGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCSGCQKKLSNILSKMNDTESVVVNLLDKKVILTRRLQNPSTCNDSPSRVSRIKRLLGSSFR

Homology

[Close]

BLAST of Sed0022191 vs. NCBI nr
Match: XP_022150612.1 (uncharacterized protein LOC111018707 [Momordica charantia])

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-36
Identity = 90/110 (81.82%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MAERGKKKAAPPGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCSGCQKKLSNI 60
           MAER KKKAA   IGVRK +IFPHASSLASIESLSLPLVQEIVLTADI C  CQ KL+NI
Sbjct: 1   MAERAKKKAAV--IGVRKPRIFPHASSLASIESLSLPLVQEIVLTADIRCPECQNKLANI 60

Query: 61  LSKMNDTESVVVNLLDKKVILTRRLQNPSTCNDSPSRVSRIKRLLGSSFR 111
           LSK+NDTESVVVNLL+KKVILTRRLQ PSTC++S S+V+ IKRLLGSSFR
Sbjct: 61  LSKINDTESVVVNLLEKKVILTRRLQVPSTCSNSSSKVATIKRLLGSSFR 108

[Close]

BLAST of Sed0022191 vs. NCBI nr
Match: KAG7013033.1 (hypothetical protein SDJN02_25789 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.6 bits (392), Expect = 2.5e-34
Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 1   MAERGKKKAAPPGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCSGCQKKLSNI 60
           MAER  K AA  GIGVRK KIFPHASSLASIESLSLPLVQEIV  ADIGC+ CQKKL+NI
Sbjct: 1   MAERPNKTAAAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFAADIGCAECQKKLANI 60

Query: 61  LSKMNDTESVVVNLLDKKVILTRRLQNPSTCNDSPSRVSRIKRLLGSSFR 111
           L+KMNDTESVVVNLLDKKVILTR+LQ P+      SRVS IKRLLGSSFR
Sbjct: 61  LAKMNDTESVVVNLLDKKVILTRKLQIPT------SRVSTIKRLLGSSFR 104

[Close]

BLAST of Sed0022191 vs. NCBI nr
Match: XP_022968296.1 (uncharacterized protein LOC111467567 isoform X3 [Cucurbita maxima])

HSP 1 Score: 155.2 bits (391), Expect = 3.2e-34
Identity = 90/111 (81.08%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MAER-GKKKAAPPGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCSGCQKKLSN 60
           MAER  K  AA  GIGVRK KIFPHASSLASIESLSLPLVQEIV TADIGC+ CQKKL+N
Sbjct: 1   MAERPNKAAAAAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFTADIGCAECQKKLAN 60

Query: 61  ILSKMNDTESVVVNLLDKKVILTRRLQNPSTCNDSPSRVSRIKRLLGSSFR 111
           ILSKMNDTESVVVNLLDKKVILTR+LQ PS      SRVS +KRLLGSSFR
Sbjct: 61  ILSKMNDTESVVVNLLDKKVILTRKLQIPS------SRVSTVKRLLGSSFR 105

[Close]

BLAST of Sed0022191 vs. NCBI nr
Match: KAG6573976.1 (hypothetical protein SDJN03_27863, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.1 bits (388), Expect = 7.2e-34
Identity = 87/110 (79.09%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MAERGKKKAAPPGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCSGCQKKLSNI 60
           MAER  K AA  GIGVRK KIFPHASSLASIESLSLPLVQEIV  ADIGC+ CQKKL+NI
Sbjct: 1   MAERPNKTAAAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFAADIGCAECQKKLANI 60

Query: 61  LSKMNDTESVVVNLLDKKVILTRRLQNPSTCNDSPSRVSRIKRLLGSSFR 111
           L+KMNDTESVVVNLLDKKVILTR+LQ P+      SR S IKRLLGSSFR
Sbjct: 61  LAKMNDTESVVVNLLDKKVILTRKLQIPT------SRASTIKRLLGSSFR 104

[Close]

BLAST of Sed0022191 vs. NCBI nr
Match: XP_023542320.1 (uncharacterized protein LOC111802252 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 4.6e-33
Identity = 88/111 (79.28%), Postives = 93/111 (83.78%), Query Frame = 0


Query: 1   MAER-GKKKAAPPGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCSGCQKKLSN 60
           MAER  K  AA  GIGVRK KIFPHASSLASIESLSLPLVQEIV  ADIGC+ CQKKL+N
Sbjct: 1   MAERPNKAAAAAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFAADIGCAECQKKLAN 60

Query: 61  ILSKMNDTESVVVNLLDKKVILTRRLQNPSTCNDSPSRVSRIKRLLGSSFR 111
           IL+KMNDTESVVVNLLDKKVILTR+LQ P+      SRVS IKRLLGSSFR
Sbjct: 61  ILAKMNDTESVVVNLLDKKVILTRKLQIPT------SRVSTIKRLLGSSFR 105

[Close]

BLAST of Sed0022191 vs. ExPASy TrEMBL
Match: A0A6J1DB71 (uncharacterized protein LOC111018707 OS=Momordica charantia OX=3673 GN=LOC111018707 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 90/110 (81.82%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MAERGKKKAAPPGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCSGCQKKLSNI 60
           MAER KKKAA   IGVRK +IFPHASSLASIESLSLPLVQEIVLTADI C  CQ KL+NI
Sbjct: 1   MAERAKKKAAV--IGVRKPRIFPHASSLASIESLSLPLVQEIVLTADIRCPECQNKLANI 60

Query: 61  LSKMNDTESVVVNLLDKKVILTRRLQNPSTCNDSPSRVSRIKRLLGSSFR 111
           LSK+NDTESVVVNLL+KKVILTRRLQ PSTC++S S+V+ IKRLLGSSFR
Sbjct: 61  LSKINDTESVVVNLLEKKVILTRRLQVPSTCSNSSSKVATIKRLLGSSFR 108

[Close]

BLAST of Sed0022191 vs. ExPASy TrEMBL
Match: A0A6J1HUG9 (uncharacterized protein LOC111467567 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111467567 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 90/111 (81.08%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MAER-GKKKAAPPGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCSGCQKKLSN 60
           MAER  K  AA  GIGVRK KIFPHASSLASIESLSLPLVQEIV TADIGC+ CQKKL+N
Sbjct: 1   MAERPNKAAAAAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFTADIGCAECQKKLAN 60

Query: 61  ILSKMNDTESVVVNLLDKKVILTRRLQNPSTCNDSPSRVSRIKRLLGSSFR 111
           ILSKMNDTESVVVNLLDKKVILTR+LQ PS      SRVS +KRLLGSSFR
Sbjct: 61  ILSKMNDTESVVVNLLDKKVILTRKLQIPS------SRVSTVKRLLGSSFR 105

[Close]

BLAST of Sed0022191 vs. ExPASy TrEMBL
Match: A0A6J1G188 (uncharacterized protein LOC111449743 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111449743 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.4e-32
Identity = 85/109 (77.98%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MAERGKKKAAPPGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCSGCQKKLSNI 60
           MAER  K AA  GIGVRK KIFPHASSLAS+ESLSLPLVQEIV  ADIGC+ CQKKL+NI
Sbjct: 1   MAERPNKTAA-AGIGVRKLKIFPHASSLASVESLSLPLVQEIVFAADIGCAECQKKLANI 60

Query: 61  LSKMNDTESVVVNLLDKKVILTRRLQNPSTCNDSPSRVSRIKRLLGSSF 110
           L+KMNDTESVVVNLLDKKVILTR+LQ  +      SRVS IKRLLGSSF
Sbjct: 61  LAKMNDTESVVVNLLDKKVILTRKLQIQT------SRVSTIKRLLGSSF 102

[Close]

BLAST of Sed0022191 vs. ExPASy TrEMBL
Match: A0A0A0KT62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608570 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.0e-29
Identity = 77/98 (78.57%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 13  GIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCSGCQKKLSNILSKMNDTESVVV 72
           GIGVRK++IFPHASSLASIESL+LPLVQEIVLTADIGC+ CQKKL+NILSKMNDTESVVV
Sbjct: 7   GIGVRKKRIFPHASSLASIESLTLPLVQEIVLTADIGCAECQKKLANILSKMNDTESVVV 66

Query: 73  NLLDKKVILTRRLQNPSTCNDSPSRVSRIKRLLGSSFR 111
           NLLDKKVILTRR Q        PSRVS I+RL  S  R
Sbjct: 67  NLLDKKVILTRRSQ-------IPSRVSTIRRLFASPCR 97

[Close]

BLAST of Sed0022191 vs. ExPASy TrEMBL
Match: A0A6J1G176 (uncharacterized protein LOC111449743 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449743 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.4e-27
Identity = 85/136 (62.50%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 1   MAERGKKKAAPPGIGVRKQKIFPHASSLASIESLSLPL---------------------- 60
           MAER  K AA  GIGVRK KIFPHASSLAS+ESLSLPL                      
Sbjct: 1   MAERPNKTAA-AGIGVRKLKIFPHASSLASVESLSLPLVSAFSLYLRRFSSSPAEINALW 60

Query: 61  -----VQEIVLTADIGCSGCQKKLSNILSKMNDTESVVVNLLDKKVILTRRLQNPSTCND 110
                VQEIV  ADIGC+ CQKKL+NIL+KMNDTESVVVNLLDKKVILTR+LQ  +    
Sbjct: 61  SVILQVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQT---- 120

[Close]

BLAST of Sed0022191 vs. TAIR 10
Match: AT1G68585.1 (unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-13
Identity = 39/85 (45.88%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 26  SSLASIESLSLPLVQEIVLTADIGCSGCQKKLSNILSKMNDTESVVVNLLDKKVILTRRL 85
           +SLAS+ SLS+PL+QEIVL+ADI CS CQ+K+++I+++M +T S++V++L+KKV LT   
Sbjct: 26  TSLASVASLSMPLIQEIVLSADIRCSDCQEKVADIMARMIETYSILVSVLEKKVTLTCTY 85

Query: 86  QNPSTCNDSPS-----RVSRIKRLL 106
                 + S       ++S IKRL+
Sbjct: 86  SGDRRVSKSYGEALLCKISTIKRLI 110

[Close]

BLAST of Sed0022191 vs. TAIR 10
Match: AT2G35730.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 5.2e-06
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 27 SLASIESLSLPLVQEIVLTADIGCSGCQKKLSNILSKMNDTESVVVNLLDKKVILTR 84
          +L   E LSLP  Q I + AD+GC  CQ ++S I+SKM   E  VV+ L KK+++ R
Sbjct: 10 TLMLCEKLSLPSFQVIEINADVGCVACQDRVSKIVSKMTGIEEYVVD-LKKKLVMAR 65

The following BLAST results are available for this feature:

BLAST of Sed0022191 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150612.1	2.6e-36	81.82	uncharacterized protein LOC111018707 [Momordica charantia]	[more]
KAG7013033.1	2.5e-34	80.00	hypothetical protein SDJN02_25789 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022968296.1	3.2e-34	81.08	uncharacterized protein LOC111467567 isoform X3 [Cucurbita maxima]	[more]
KAG6573976.1	7.2e-34	79.09	hypothetical protein SDJN03_27863, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023542320.1	4.6e-33	79.28	uncharacterized protein LOC111802252 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0022191 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0022191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DB71	1.3e-36	81.82	uncharacterized protein LOC111018707 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1HUG9	1.6e-34	81.08	uncharacterized protein LOC111467567 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G188	9.4e-32	77.98	uncharacterized protein LOC111449743 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0KT62	2.0e-29	78.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608570 PE=4 SV=1	[more]
A0A6J1G176	2.4e-27	62.50	uncharacterized protein LOC111449743 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Sed0022191 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68585.1	4.4e-13	45.88	unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bact...	[more]
AT2G35730.1	5.2e-06	45.61	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 76..136 e-value: 4.6E-6 score: 28.8
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 80..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022191.1	Sed0022191.1	mRNA
Sed0022191.2	Sed0022191.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding