Sed0022101 (gene) Chayote v1

Overview
NameSed0022101
Typegene
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S20
LocationLG13: 1361384 .. 1363498 (-)
RNA-Seq ExpressionSed0022101
SyntenySed0022101
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTTCTCTTTCTTCGACGGCAGACATCTTCTTCTCACCCAATCTCAGGTTTGGCTTTTGAATTTTGCAGCTTTTGCTCTTATTTGCGATTAACATAATTTGTGTTTGATGAGATTTCTGAATATCAATTTGTTTCTCAATTTTCATCGCGAATTTGTTCTATTAATGTAGATGAGTACTTTTTGGCAACATTTGTTTGACAGATTTGTTTTGGAGATTTAGGATAACCAGAAATTATGGCGTATACAGCAATGAAACCCACAAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCGAAAAACGTCAAGAACCTTGAGAAAGGTATTTTTTTAAAATTTTTGTTGTTATATGCTGCATTGTTGTTGTTTTTGAAACAAGGGTAACTACGCCCGAATGAGTAATGTCATACTTGAGTCTCGAACTCGGGACCTTGAGGGATACGCTGCATTGTTGTTAAGGTTTTCTTTTTGCACAATTTAGCGAGTGGAATGAATTTATTTGATGTTTGTAAGTGAGTTGGATGAAATTGAATCTTCATTTCACTAGTTATTTGACATAACTTTCAACTGTGACTAATGGGAATGAGTTAGATTGTTGATGATTCCACATCGGAAAAAATGAGTAGACCTCACGACCTTTATATGAAAGGTTAATTATTTTACTCATTGCCAATTGGGTTTGAAGTGTATCGACATGTAATAGTTGCTTGGTTTGTGATTTTCTTGCTGATAAGCTTCTTAGGATCGTAATCTGTTTTGATTGATGTCATGGTGTCAAATCCTCACTTTGATGACTGCATTATTGAATGAAAGCATGGGCATACATATATACGCCATAGGTAATCTTGCAACAGGTACCAAGGAAGTAACTAATCGTAACGGCTAATAACATGATACCTAACGCATGGATGCAACTACTAATATTGAGTAGTAACTCTAATTGTTGGCCTTTCATGTAGTTGAGTTTTTATTTTTTAAAATGTCTCATTTAAGGCGTTTTGGCAACTAGTTTGAATTCTGTTTAAATCCATAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAGGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATTACAACCAGAAAATCCCCATGTGGGGAAGGTAAGTTACCTGTTAACAATGTTAAAGTTTGTGCCTGATTCTTTGATGCTCCTTTTTTAAAAATTTAATGTTACTCTTTCTTTAATTTGTTTGTTGGTGGGGACTTAGAGTTTGGATATCGATTGACCAGTGTCTTTATTTTTTAGAAAAGTTAGTTGAGACCAATGCATGTATTGCTTCCAGGAAATTCTTTTGATGTTCTCTTTTTTTATGGACGAATCCAATGTGACAACCACTTTAACTTTTATGGGTTGGTTTAGAGGACAAAGCAACCTTAGAGATCCTTACATAGGTTATGAGTTTCATTCATAATGATCATCTATCTAGAAAATAAATATATATGTATTTATTTGACACTGAAATGCTTAAACATTTGATGGTTTGTTTTGTGAGAATAATCAAACTATGCATAACTTGACATGGTCCAGACTTTCACGGATATAATAAAAATAATTAAAAGATTAATTTATGTGTTGAATTAATTTATGTGTTGAAACTTTGAAACTGAAATCATTACCTTCATTTGGTTTCTGAATGCAGGTACAAACACATTCGACAGATTTGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGTTCTGCAGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGTGTTGAGGTTGAGGTCACCATTGCCGATCAATGAGTTTTCTCATTTCATGTATTTTTCGTCCTATTTTTAGTCTCATTAGACAGATGTTACTTTTTGGGTTAATGCAATAGTTTTTTACCGTTACATGGTTGAAATTAACGACATTGAGAGAATTTTGTAAACCTGGTAATTTTCTTGCATTATCTTATGCGTTTTAATTATCTTCTCTATTAGGGTTTCAATATGCAGAGCTTTCAAATGTCTAATTTTTACCATTACATGGTTGATTATTTACAATCCAATCAAGTTGTC

mRNA sequence

CTTTTTCTCTTTCTTCGACGGCAGACATCTTCTTCTCACCCAATCTCAGATTTGTTTTGGAGATTTAGGATAACCAGAAATTATGGCGTATACAGCAATGAAACCCACAAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCGAAAAACGTCAAGAACCTTGAGAAAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAGGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATTACAACCAGAAAATCCCCATGTGGGGAAGGTACAAACACATTCGACAGATTTGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGTTCTGCAGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGTGTTGAGGTTGAGGTCACCATTGCCGATCAATGAGTTTTCTCATTTCATGTATTTTTCGTCCTATTTTTAGTCTCATTAGACAGATGTTACTTTTTGGGTTAATGCAATAGTTTTTTACCGTTACATGGTTGAAATTAACGACATTGAGAGAATTTTGTAAACCTGGTAATTTTCTTGCATTATCTTATGCGTTTTAATTATCTTCTCTATTAGGGTTTCAATATGCAGAGCTTTCAAATGTCTAATTTTTACCATTACATGGTTGATTATTTACAATCCAATCAAGTTGTC

Coding sequence (CDS)

ATGGCGTATACAGCAATGAAACCCACAAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCGAAAAACGTCAAGAACCTTGAGAAAGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAGGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATTACAACCAGAAAATCCCCATGTGGGGAAGGTACAAACACATTCGACAGATTTGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGTTCTGCAGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGTGTTGAGGTTGAGGTCACCATTGCCGATCAATGA

Protein sequence

MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ
Homology
[Close]
BLAST of Sed0022101 vs. NCBI nr
Match: XP_008439109.1 (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S ribosomal protein S20-2-like [Cucurbita moschata] >XP_022973095.1 40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023516475.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >XP_038878364.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878373.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878380.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878389.1 40S ribosomal protein S20-2-like [Benincasa hispida] >KAA0067687.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa] >KAG7030825.1 40S ribosomal protein S20-2 [Cucurbita argyrosperma subsp. argyrosperma] >TYK23691.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 9.3e-59
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of Sed0022101 vs. NCBI nr
Match: KAG6600158.1 (Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.9 bits (603), Expect = 9.3e-59
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 229 MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 288

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 289 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 348

Query: 121 DQ 123
           DQ
Sbjct: 349 DQ 350

[Close]
BLAST of Sed0022101 vs. NCBI nr
Match: XP_022985516.1 (40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >KAG7014816.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.8 bits (595), Expect = 7.9e-58
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY AMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of Sed0022101 vs. NCBI nr
Match: XP_022922646.1 (40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 233.8 bits (595), Expect = 7.9e-58
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY AMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 34  MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 93

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 94  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 153

Query: 121 DQ 123
           DQ
Sbjct: 154 DQ 155

[Close]
BLAST of Sed0022101 vs. NCBI nr
Match: KAG6576788.1 (40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.8 bits (595), Expect = 7.9e-58
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY AMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 265 MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 324

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 325 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 384

Query: 121 DQ 123
           DQ
Sbjct: 385 DQ 386

[Close]
BLAST of Sed0022101 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 110/121 (90.91%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0022101 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-53
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 2   AYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of Sed0022101 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 6.9e-49
Identity = 99/117 (84.62%), Postives = 107/117 (91.45%), Query Frame = 0 

Query: 6   MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLH 65
           MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVLH
Sbjct: 12  MKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLH 71

Query: 66  ITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ 123
           ITTRKSPCGEGTNT+DRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI+DQ
Sbjct: 72  ITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISDQ 128

[Close]
BLAST of Sed0022101 vs. ExPASy Swiss-Prot
Match: P23403 (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-40
Identity = 79/107 (73.83%), Postives = 98/107 (91.59%), Query Frame = 0 

Query: 15  DTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCG 74
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 75  EGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           EG+ T+DRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of Sed0022101 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.0e-40
Identity = 81/117 (69.23%), Postives = 101/117 (86.32%), Query Frame = 0 

Query: 5   AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ T+DRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of Sed0022101 vs. ExPASy TrEMBL
Match: A0A5A7VKH9 (40S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00570 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.5e-59
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of Sed0022101 vs. ExPASy TrEMBL
Match: A0A6J1IAH1 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.5e-59
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of Sed0022101 vs. ExPASy TrEMBL
Match: A0A6J1FSX5 (40S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.5e-59
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of Sed0022101 vs. ExPASy TrEMBL
Match: A0A1S3AXJ9 (40S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.5e-59
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of Sed0022101 vs. ExPASy TrEMBL
Match: A0A6J1J8F7 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.8e-58
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY AMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of Sed0022101 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-55
Identity = 110/121 (90.91%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0022101 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-55
Identity = 110/121 (90.91%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0022101 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-55
Identity = 110/121 (90.91%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of Sed0022101 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 210.3 bits (534), Expect = 8.7e-55
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 2   AYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of Sed0022101 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 210.3 bits (534), Expect = 8.7e-55
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 2   AYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

The following BLAST results are available for this feature:
BLAST of Sed0022101 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008439109.19.3e-5998.36PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S r... [more]
KAG6600158.19.3e-5998.36Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022985516.17.9e-5897.5440S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosoma... [more]
XP_022922646.17.9e-5897.5440S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata][more]
KAG6576788.17.9e-5897.5440S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Sed0022101 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STY61.4e-5490.9140S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1[more]
P492001.2e-5390.0040S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2[more]
P356866.9e-4984.6240S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2... [more]
P234031.2e-4073.8340S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1[more]
Q3ZBH82.0e-4069.2340S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1[more]
BLAST of Sed0022101 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VKH94.5e-5998.3640S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1IAH14.5e-5998.3640S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=... [more]
A0A6J1FSX54.5e-5998.3640S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 P... [more]
A0A1S3AXJ94.5e-5998.3640S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV... [more]
A0A6J1J8F73.8e-5897.5440S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=... [more]
BLAST of Sed0022101 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G47370.21.0e-5590.91Ribosomal protein S10p/S20e family protein [more]
AT3G47370.11.0e-5590.91Ribosomal protein S10p/S20e family protein [more]
AT3G47370.31.0e-5590.91Ribosomal protein S10p/S20e family protein [more]
AT3G45030.18.7e-5590.00Ribosomal protein S10p/S20e family protein [more]
AT5G62300.18.7e-5590.00Ribosomal protein S10p/S20e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 79..93
score: 51.41
coord: 22..35
score: 44.51
coord: 57..72
score: 42.43
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 1..121
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 20..119
score: 18.290716
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 24..118
e-value: 1.2E-37
score: 141.1
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 24..118
e-value: 5.4E-27
score: 93.9
IPR036838Ribosomal protein S10 domain superfamilyGENE3D3.30.70.600Ribosomal protein S10 domaincoord: 7..121
e-value: 7.7E-48
score: 163.4
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILY54999Ribosomal protein S10coord: 22..119
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMTIGR01046TIGR01046coord: 21..119
e-value: 5.9E-40
score: 133.7
NoneNo IPR availablePANTHERPTHR11700:SF27RIBOSOMAL PROTEIN S10-RELATEDcoord: 1..121
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 46..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022101.1Sed0022101.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome