Sed0022042 (gene) Chayote v1

Overview


Name	Sed0022042
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ATP-dependent 6-phosphofructokinase
Location	LG06: 7080003 .. 7081801 (-)
RNA-Seq Expression	Sed0022042
Synteny	Sed0022042

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCTCTAATAGAATTTAGTGAAAATAGATGGACTAGTTAGCAATTACCCAATAAATAAGCCCTAATTTTTCCTTCCTCTCATTTTCCAAATGTCACGCACAACAACTTCTCCCCTTGCAATTTTTTGGTCGATTTTCCCCTCCCCTGCGCGAATCTCAACAGCCCGTCGCTGATGAAGCTCTGATTCTCCTCCCTCCATGTTCGACAACACACGCAATAGATTGAGGTAAGCGAGTTTTGAGTTTTTATCTCATTCTTTGTTCTTTCCATGAAGTTTTTCCTTATAACAAGTGGGTTTTTTGGTGTTTGGGATTAATTACTGACAATATTGAGGATTGGTGAACTATATAGTTACTTATCGCTTTTTTGTTTAACCTTACGGACTGCAAAATCTCCAATTTTTCCAAATCATTTTCGAAGTCTTCTCCCTCGTGCAATCTCTCGGCTAAGCTGTTGGGGTTTGTCCATTTTAATTTTGTTGAAAGCTTAATGGAAATAAGGTATTGAAATTGTTTTCTCCTGCTATGATACAAAACGGGAAGCGTCCATAAAATTAAAAAAACAGAAATTTTCTTTCCCCTCATTCTTGTACTTGGCACAACTCTATGTAATAAATTTTTGATTATTTGGTAACAAATTTCATTTTCTTGGTTCAATATAGAGTGGTATTGTAGCATTTGCTCATATATTGATGCGCCTTGAGGTTTTCTGTTCGAATGGTGACTGGTATTTTGATACACCTCTAACTTCTCTTTCTCCACCTTCTGCTAATTTTCATTCATCGATTTTGAATTCTATGTTTGCAAAACAATGTTGAAATCCAACAATTACAATATATTCAAAAGCATCAGTGGATAATCACTTTTTAGTTTCCTTTCTTTTTGGTTCTTATGGTTTTTCAGGTGCTAAAGGTCAGCCACCCACCGTCTCCCCTTCCTCTCTTTGTCGTCGGAGAGTTCAACCTTTACATGTGTAAGTCCTCTTTCCCTCTGCTTTGACAATGTTGTGAACAACTTATTTCTTAATGGAAAAATAAATTTCAATTCTAATGCTTTGGTACAAATAAAAATTAAGAGATCAATTCTAATTTTAATTTGCTTTGTTTCGTCCTTTACATGTGTAAGTTTTGTTGGCAAAGCCTCGGACATACACGAATTTCTACGGTGAATCAGTTAGTTAAACCATATCTTTTTAGTTTTCTCTCAATAATGAGCCATTGAATCAATATTGCAGTCATAAACATGTTTTAGTTAAGAACAACCTGAAAAAGAAAAAAAACACAATAATGTAACTTGCTAATATGATGATTTTCATACATCAATGCTTCATAAATATTGTTACTGGATCTAGTAACAATATTTATGAAGCATTGATGTATGAAAATCATCATATTAGCAAGTTACATCATTGTGTTTTTTTTTCTTTTTCAGGTTGTTCTTAACAAGAATAGTCCAAGAGGAATACATTTTAGGCGTGTTGGCCCCCGCCAACGTGTAAGCTCTCTCTTCATTCTTCTCTCAATGTATGCATGGTTTTTTAGTTTCATCTTTTAGGTACTGAGTTGCAATGGCTTGTTGTTCAGGTATACTTTCAGTCAGATGAGGTTTATGCTTGTATTGTGACAGTGGTGGTCTTTGCCCCGGACTCAACATTGTGATCAGGGAGCTAGTTTGTGGCTTATACAATATGTATGGCGTCAAGAAGGTTTTCAGAATCGAAGTAAATGATTGCCTAATCTCTGCTCTTACCTTCATAAAGGATGTTTTTTTCTACGTCTACCCACTAGGAACATAG

mRNA sequence

ATGGGATCTCTAATAGAATTTAGTGAAAATAGATGGACTAGTGCTAAAGGTCAGCCACCCACCGTCTCCCCTTCCTCTCTTTGTCGTCGGAGAGTTCAACCTTTACATGTGTTGTTCTTAACAAGAATAGTCCAAGAGGAATACATTTTAGGCGTGTTGGCCCCCGCCAACGTTGGTGGTCTTTGCCCCGGACTCAACATTGTGATCAGGGAGCTAGTTTGTGGCTTATACAATATGTATGGCGTCAAGAAGGTTTTCAGAATCGAAGTAAATGATTGCCTAATCTCTGCTCTTACCTTCATAAAGGATGTTTTTTTCTACGTCTACCCACTAGGAACATAG

Coding sequence (CDS)

ATGGGATCTCTAATAGAATTTAGTGAAAATAGATGGACTAGTGCTAAAGGTCAGCCACCCACCGTCTCCCCTTCCTCTCTTTGTCGTCGGAGAGTTCAACCTTTACATGTGTTGTTCTTAACAAGAATAGTCCAAGAGGAATACATTTTAGGCGTGTTGGCCCCCGCCAACGTTGGTGGTCTTTGCCCCGGACTCAACATTGTGATCAGGGAGCTAGTTTGTGGCTTATACAATATGTATGGCGTCAAGAAGGTTTTCAGAATCGAAGTAAATGATTGCCTAATCTCTGCTCTTACCTTCATAAAGGATGTTTTTTTCTACGTCTACCCACTAGGAACATAG

Protein sequence

MGSLIEFSENRWTSAKGQPPTVSPSSLCRRRVQPLHVLFLTRIVQEEYILGVLAPANVGGLCPGLNIVIRELVCGLYNMYGVKKVFRIEVNDCLISALTFIKDVFFYVYPLGT

Homology

[Close]

BLAST of Sed0022042 vs. NCBI nr
Match: RZS16146.1 (hypothetical protein BHM03_00048097 [Ensete ventricosum])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 39/94 (41.49%), Postives = 46/94 (48.94%), Query Frame = 0


Query: 35  LHVLFLTRIVQEEYILGVLAPA----------------NVGGLCPGLNIVIRELVCGLYN 94
           +H L    I Q   I GVL PA                  GGLCPGLN VIRE+VCGL +
Sbjct: 26  VHRLLSREIAQGASIFGVLGPAKGYVYFESDDVHACIVTCGGLCPGLNTVIREIVCGLSH 85

Query: 95  MYGVKKVFRIEVNDCLISALTFIKDVFFYVYPLG 113
           MYGV K+  IE  +C    L F +     VY +G
Sbjct: 86  MYGVSKIIGIEARECQFFTLIFEESYARQVYIIG 119

[Close]

BLAST of Sed0022042 vs. NCBI nr
Match: TYK02852.1 (ATP-dependent 6-phosphofructokinase 4 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-06
Identity = 29/34 (85.29%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 59 GGLCPGLNIVIRELVCGLYNMYGVKKVFRIEVND 93
          GGLCP LNIVIRELVCGLYNMYGVKKV   EV D
Sbjct: 58 GGLCPELNIVIRELVCGLYNMYGVKKVLETEVID 91

[Close]

BLAST of Sed0022042 vs. NCBI nr
Match: KAA0064178.1 (ATP-dependent 6-phosphofructokinase 4 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-06
Identity = 29/34 (85.29%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 59 GGLCPGLNIVIRELVCGLYNMYGVKKVFRIEVND 93
          GGLCP LNIVIRELVCGLYNMYGVKKV   EV D
Sbjct: 53 GGLCPELNIVIRELVCGLYNMYGVKKVLETEVID 86

[Close]

BLAST of Sed0022042 vs. NCBI nr
Match: KAG5559258.1 (hypothetical protein RHGRI_008974 [Rhododendron griersonianum])

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-06
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIEVNDCLI 96
           GGLCPGLN VIRE+VCGL++MYGVKKV  I+V+D L+
Sbjct: 143 GGLCPGLNTVIREIVCGLHHMYGVKKVLGIDVSDLLL 179

[Close]

BLAST of Sed0022042 vs. NCBI nr
Match: XP_022960997.1 (ATP-dependent 6-phosphofructokinase 7-like [Cucurbita moschata])

HSP 1 Score: 61.6 bits (148), Expect = 5.0e-06
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIE 90
           GGLCPGLN VIRELVCGLYNMYGVKKV  IE
Sbjct: 104 GGLCPGLNTVIRELVCGLYNMYGVKKVLGIE 134

[Close]

BLAST of Sed0022042 vs. ExPASy Swiss-Prot
Match: Q9M0F9 (ATP-dependent 6-phosphofructokinase 1 OS=Arabidopsis thaliana OX=3702 GN=PFK1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.7e-06
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIE 90
           GGLCPGLN VIRE+VCGL  MYGVK++  I+
Sbjct: 101 GGLCPGLNTVIREIVCGLSYMYGVKRILGID 131

[Close]

BLAST of Sed0022042 vs. ExPASy Swiss-Prot
Match: Q9FKG3 (ATP-dependent 6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PFK4 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.8e-06
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIE 90
           GGLCPG+N VIRE+VCGL NMYGV  +  I+
Sbjct: 151 GGLCPGINTVIREIVCGLNNMYGVNNILGIQ 181

[Close]

BLAST of Sed0022042 vs. ExPASy Swiss-Prot
Match: Q9M076 (ATP-dependent 6-phosphofructokinase 6 OS=Arabidopsis thaliana OX=3702 GN=PFK6 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.0e-05
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIE 90
           GGLCPGLN VIRE+VCGL+ MYGV +V  ++
Sbjct: 101 GGLCPGLNTVIREIVCGLHFMYGVTEVIGVD 131

[Close]

BLAST of Sed0022042 vs. ExPASy Swiss-Prot
Match: Q9FIK0 (ATP-dependent 6-phosphofructokinase 2 OS=Arabidopsis thaliana OX=3702 GN=PFK2 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.7e-05
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRI 89
           GGLCPG+N VIRELV GL+ +YGV++++ I
Sbjct: 85  GGLCPGMNTVIRELVVGLWELYGVREIYGI 114

[Close]

BLAST of Sed0022042 vs. ExPASy Swiss-Prot
Match: Q94AA4 (ATP-dependent 6-phosphofructokinase 3 OS=Arabidopsis thaliana OX=3702 GN=PFK3 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.8e-04
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIE 90
           GGLCPGLN VIRE+V  L  MYGVK++  I+
Sbjct: 100 GGLCPGLNTVIREIVSSLSYMYGVKRILGID 130

[Close]

BLAST of Sed0022042 vs. ExPASy TrEMBL
Match: A0A5A7V994 (ATP-dependent 6-phosphofructokinase 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001060 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 29/34 (85.29%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 59 GGLCPGLNIVIRELVCGLYNMYGVKKVFRIEVND 93
          GGLCP LNIVIRELVCGLYNMYGVKKV   EV D
Sbjct: 53 GGLCPELNIVIRELVCGLYNMYGVKKVLETEVID 86

[Close]

BLAST of Sed0022042 vs. ExPASy TrEMBL
Match: A0A5D3BVL3 (ATP-dependent 6-phosphofructokinase 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00540 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 29/34 (85.29%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 59 GGLCPGLNIVIRELVCGLYNMYGVKKVFRIEVND 93
          GGLCP LNIVIRELVCGLYNMYGVKKV   EV D
Sbjct: 58 GGLCPELNIVIRELVCGLYNMYGVKKVLETEVID 91

[Close]

BLAST of Sed0022042 vs. ExPASy TrEMBL
Match: A0A6J1JJL9 (ATP-dependent 6-phosphofructokinase OS=Cucurbita maxima OX=3661 GN=LOC111485178 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIE 90
           GGLCPGLN VIRELVCGLYNMYGVKKV  IE
Sbjct: 104 GGLCPGLNTVIRELVCGLYNMYGVKKVLGIE 134

[Close]

BLAST of Sed0022042 vs. ExPASy TrEMBL
Match: A0A6J1KSR7 (ATP-dependent 6-phosphofructokinase OS=Cucurbita maxima OX=3661 GN=LOC111498337 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIE 90
           GGLCPGLN VIRELVCGLYNMYGVKKV  IE
Sbjct: 104 GGLCPGLNTVIRELVCGLYNMYGVKKVLGIE 134

[Close]

BLAST of Sed0022042 vs. ExPASy TrEMBL
Match: A0A6J1KUL4 (ATP-dependent 6-phosphofructokinase OS=Cucurbita maxima OX=3661 GN=LOC111498337 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIE 90
           GGLCPGLN VIRELVCGLYNMYGVKKV  IE
Sbjct: 104 GGLCPGLNTVIRELVCGLYNMYGVKKVLGIE 134

[Close]

BLAST of Sed0022042 vs. TAIR 10
Match: AT4G29220.1 (phosphofructokinase 1 )

HSP 1 Score: 51.6 bits (122), Expect = 4.8e-07
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIE 90
           GGLCPGLN VIRE+VCGL  MYGVK++  I+
Sbjct: 101 GGLCPGLNTVIREIVCGLSYMYGVKRILGID 131

[Close]

BLAST of Sed0022042 vs. TAIR 10
Match: AT5G61580.1 (phosphofructokinase 4 )

HSP 1 Score: 51.2 bits (121), Expect = 6.3e-07
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIE 90
           GGLCPG+N VIRE+VCGL NMYGV  +  I+
Sbjct: 151 GGLCPGINTVIREIVCGLNNMYGVNNILGIQ 181

[Close]

BLAST of Sed0022042 vs. TAIR 10
Match: AT5G61580.2 (phosphofructokinase 4 )

HSP 1 Score: 51.2 bits (121), Expect = 6.3e-07
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIE 90
           GGLCPG+N VIRE+VCGL NMYGV  +  I+
Sbjct: 151 GGLCPGINTVIREIVCGLNNMYGVNNILGIQ 181

[Close]

BLAST of Sed0022042 vs. TAIR 10
Match: AT4G32840.1 (phosphofructokinase 6 )

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-06
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRIE 90
           GGLCPGLN VIRE+VCGL+ MYGV +V  ++
Sbjct: 101 GGLCPGLNTVIREIVCGLHFMYGVTEVIGVD 131

[Close]

BLAST of Sed0022042 vs. TAIR 10
Match: AT5G47810.1 (phosphofructokinase 2 )

HSP 1 Score: 47.8 bits (112), Expect = 6.9e-06
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 59  GGLCPGLNIVIRELVCGLYNMYGVKKVFRI 89
           GGLCPG+N VIRELV GL+ +YGV++++ I
Sbjct: 85  GGLCPGMNTVIRELVVGLWELYGVREIYGI 114

The following BLAST results are available for this feature:

BLAST of Sed0022042 vs. NCBI nr


Match Name	E-value	Identity	Description
RZS16146.1	1.5e-07	41.49	hypothetical protein BHM03_00048097 [Ensete ventricosum]	[more]
TYK02852.1	2.9e-06	85.29	ATP-dependent 6-phosphofructokinase 4 [Cucumis melo var. makuwa]	[more]
KAA0064178.1	2.9e-06	85.29	ATP-dependent 6-phosphofructokinase 4 [Cucumis melo var. makuwa]	[more]
KAG5559258.1	3.8e-06	72.97	hypothetical protein RHGRI_008974 [Rhododendron griersonianum]	[more]
XP_022960997.1	5.0e-06	90.32	ATP-dependent 6-phosphofructokinase 7-like [Cucurbita moschata]	[more]

BLAST of Sed0022042 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0F9	6.7e-06	70.97	ATP-dependent 6-phosphofructokinase 1 OS=Arabidopsis thaliana OX=3702 GN=PFK1 PE...	[more]
Q9FKG3	8.8e-06	67.74	ATP-dependent 6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
Q9M076	2.0e-05	67.74	ATP-dependent 6-phosphofructokinase 6 OS=Arabidopsis thaliana OX=3702 GN=PFK6 PE...	[more]
Q9FIK0	9.7e-05	63.33	ATP-dependent 6-phosphofructokinase 2 OS=Arabidopsis thaliana OX=3702 GN=PFK2 PE...	[more]
Q94AA4	4.8e-04	64.52	ATP-dependent 6-phosphofructokinase 3 OS=Arabidopsis thaliana OX=3702 GN=PFK3 PE...	[more]

BLAST of Sed0022042 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V994	1.4e-06	85.29	ATP-dependent 6-phosphofructokinase 4 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BVL3	1.4e-06	85.29	ATP-dependent 6-phosphofructokinase 4 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1JJL9	2.4e-06	90.32	ATP-dependent 6-phosphofructokinase OS=Cucurbita maxima OX=3661 GN=LOC111485178 ...	[more]
A0A6J1KSR7	2.4e-06	90.32	ATP-dependent 6-phosphofructokinase OS=Cucurbita maxima OX=3661 GN=LOC111498337 ...	[more]
A0A6J1KUL4	2.4e-06	90.32	ATP-dependent 6-phosphofructokinase OS=Cucurbita maxima OX=3661 GN=LOC111498337 ...	[more]

BLAST of Sed0022042 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29220.1	4.8e-07	70.97	phosphofructokinase 1	[more]
AT5G61580.1	6.3e-07	67.74	phosphofructokinase 4	[more]
AT5G61580.2	6.3e-07	67.74	phosphofructokinase 4	[more]
AT4G32840.1	1.4e-06	67.74	phosphofructokinase 6	[more]
AT5G47810.1	6.9e-06	63.33	phosphofructokinase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.450		coord: 52..91 e-value: 2.8E-5 score: 25.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
IPR035966	Phosphofructokinase superfamily	SUPERFAMILY	53784	Phosphofructokinase	coord: 56..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022042.1	Sed0022042.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061615	glycolytic process through fructose-6-phosphate
biological_process	GO:0006096	glycolytic process
molecular_function	GO:0003872	6-phosphofructokinase activity