Sed0022020 (gene) Chayote v1
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Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAGAAACAAAGCAGTGTTTCCAAAGTTCCGAATCGCCTAAAACGAATCGTCGATTCTTGGTGTTCTTCGATCCGGCGGAAATGGGGATTAAGAGATTTGAATTCTGCTCGGAGCTCCTGAATACGGCCATCCATTTCGTTGTCGCCGTCGCGGAATCCGTCGGCCTCGTCATCCACAAGGAATTTCAGCCGCCGCAACGGCCGACAGCCAACTCTCGTATTCCGATTCCGTTCATCGGCTTTTACCCCTAAATCCACCCTCCGCCGCCGAGATGGGGCCATATTCCTTCCACGTTAGCCTAAATTTTGTTTTTTTTAATTCAATCGAGTTTTGTATTTTTTTTCTTTTTGGAAATAATTAATTTCATTTTATTGGATCCTAATATGCCTTTTAAGGTTATCTCTTTTTGGGCTCTATCTCTATTTCATTTTTATTAGATGGAATATTTATTCATCTTAAAGTTATTTCATTTTTATTAGAATGAATAGTTATTTACGAAAGCAATAATTTACATTTGTTGTATATTAGTATGAGGTATCCAACATTTGCCGACGTGTGACACTTGCAAAGAGCTCATGCCCATCAATTTATTTATTTGAAACCACACAATTCATTAGAATCCCTGAAGACCCAAACAAGAAGAAACAAAGCAGTGTTTCCAAAGTTCCGAATCGCCTAAAACGAATCGTCGATTCTTGGTGTTCTTCGATCCGGCGGAAATGGGGATTAAGAGATTTGAATTCTGCTCGGAGCTCCTGAATACGGCCATCCATTTCGTTGTCGCCGTCGCGGAATCCGTCGGCCTCGTCATCCACAAGGAATTTCAGCCGCCGCAACGGCCGACAGCCAACTCTCGTATTCCGATTCCGTTCATCGGCTTTTACCCCTAAATCCACCCTCCGCCGCCGAGATGGGGCCATATTCCTTCCACGTTAGCCTAAATTTTGTTTTTTTTAATTCAATCGAGTTTTGTATTTTTTTTCTTTTTGGAAATAATTAATTTCATTTTATTGGATCCTAATATGCCTTTTAAGGTTATCTCTTTTTGGGCTCTATCTCTATTTCATTTTTATTAGATGGAATATTTATTCATCTTAAAGTTATTTCATTTTTATTAGAATGAATAGTTATTTACGAAAGCAATAATTTACATTTGTTGTATATTAGTATGAGGTATCCAACATTTGCCGACGTGTGACACTTGCAAAGAGCTCATGCCCATCAATTTATTTATTTGAAACCACACAATTCATTAGAATCCCTGAAGACCCAAACAA ATGGGGATTAAGAGATTTGAATTCTGCTCGGAGCTCCTGAATACGGCCATCCATTTCGTTGTCGCCGTCGCGGAATCCGTCGGCCTCGTCATCCACAAGGAATTTCAGCCGCCGCAACGGCCGACAGCCAACTCTCGTATTCCGATTCCGTTCATCGGCTTTTACCCCTAA MGIKRFEFCSELLNTAIHFVVAVAESVGLVIHKEFQPPQRPTANSRIPIPFIGFYP Homology
BLAST of Sed0022020 vs. NCBI nr
Match: KAA0031272.1 (hypothetical protein E6C27_scaffold139G00250 [Cucumis melo var. makuwa] >KGN43958.1 hypothetical protein Csa_017301 [Cucumis sativus] >TYK06724.1 hypothetical protein E5676_scaffold13G00250 [Cucumis melo var. makuwa]) HSP 1 Score: 80.5 bits (197), Expect = 5.1e-12 Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0
BLAST of Sed0022020 vs. NCBI nr
Match: XP_015874275.1 (uncharacterized protein LOC107411246 [Ziziphus jujuba]) HSP 1 Score: 60.8 bits (146), Expect = 4.2e-06 Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 0
BLAST of Sed0022020 vs. NCBI nr
Match: KAB2042822.1 (hypothetical protein ES319_D02G244200v1 [Gossypium barbadense] >KAG4160081.1 hypothetical protein ERO13_D02G211700v2 [Gossypium hirsutum] >TYG80995.1 hypothetical protein ES288_D02G261900v1 [Gossypium darwinii] >TYH85421.1 hypothetical protein ES332_D02G265400v1 [Gossypium tomentosum] >TYI95055.1 hypothetical protein E1A91_D02G250500v1 [Gossypium mustelinum]) HSP 1 Score: 56.6 bits (135), Expect = 7.9e-05 Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 0
BLAST of Sed0022020 vs. NCBI nr
Match: KJB32405.1 (hypothetical protein B456_005G239600 [Gossypium raimondii]) HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04 Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 0
BLAST of Sed0022020 vs. NCBI nr
Match: KAG4209325.1 (hypothetical protein ERO13_A03G190700v2 [Gossypium hirsutum] >TYH26196.1 hypothetical protein ES288_A03G231700v1 [Gossypium darwinii] >TYI37631.1 hypothetical protein ES332_A03G226400v1 [Gossypium tomentosum] >TYJ44239.1 hypothetical protein E1A91_A03G209600v1 [Gossypium mustelinum]) HSP 1 Score: 53.5 bits (127), Expect = 6.7e-04 Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 0
BLAST of Sed0022020 vs. ExPASy TrEMBL
Match: A0A5D3C626 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00250 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12 Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0
BLAST of Sed0022020 vs. ExPASy TrEMBL
Match: A0A0A0K3A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074910 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12 Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0
BLAST of Sed0022020 vs. ExPASy TrEMBL
Match: A0A6P3ZHL2 (uncharacterized protein LOC107411246 OS=Ziziphus jujuba OX=326968 GN=LOC107411246 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06 Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 0
BLAST of Sed0022020 vs. ExPASy TrEMBL
Match: A0A5D2M247 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D02G265400v1 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.8e-05 Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 0
BLAST of Sed0022020 vs. ExPASy TrEMBL
Match: A0A5J5SGN3 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D02G244200v1 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.8e-05 Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 0
BLAST of Sed0022020 vs. TAIR 10
Match: AT4G33960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15830.1); Has 32 Blast hits to 32 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 40.0 bits (92), Expect = 7.1e-04 Identity = 22/58 (37.93%), Postives = 31/58 (53.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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