Sed0021911 (gene) Chayote v1

Overview


Name	Sed0021911
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Heat shock a protein 1/8
Location	LG03: 523792 .. 525205 (-)
RNA-Seq Expression	Sed0021911
Synteny	Sed0021911

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAATTGAAGTGTTATTTTAGGTGTTAAAAATACAAAAGGCAAATGGAATATTGTATCCAATAACGGTTTGATGAGCTGAAGCGAGGGCCGGATCCCTGAACCAAAGATTTAAAGAACGGTTCGCAGGCAGATCGAAGAATGGAACCTTGTTTGGGTATAGTTTAAAGAACGGTTCAATTGTCAAAATTGAAATCTGGGCGGTGGTGGGTGTTGGCGAAGCTGAATCATGGCTCGGAAATTCGGTGGTGGGTTGCGCCCCACTGGTACTCCCTCGGTGGCTTGGTCCTTTGTCGTCGTCGTCTCTTCGCTTCTCGCCGGCGCCTCCATCGTCCACAATATCTACAAACCAAATCTTGTAATCTTTCTCTCTTAATCTGATATATGTGTATTTATAATTACACTGATTCTCTGATGAATATTCTTTGTTGAAAATATGGTATTGTGTGTTCCGATTACTGGGTGCTAGTTAACTTGATAAAAGCCCCTAACCTGTTTGATGAAATGCCCATCTTTTATTTTGTGCTTAATCCTGTTCATTCCTGTTTTTTATCAACGTGGGATTTAGAAAAATTGGCTTCCTATGTTTTCTTGAAATCATATTTCAATTTCAGCTTCTTAGATTTTCAGAAATATGGTGTCATTCGTGTGTTGTGTGCAATTTAACTTGACAATGAATGTAACCTGTTCGATGAAATGCCCACCTGGCAGTTTTTGCCCATTTTCTTCTTGTTTGAGTTGAGTATAATAACCCTGTCATTCACTGTTTTTGCAGTAATGTTAAGGATCACCAAGCCATTTTCTGTTTTTTGTTTTTCTTTTGTTTGATTTTCATAAAAAGTTTATACATTTGTTATGATCATACATTTTTGCAATCGTATTGCTTTATCCATTTCTCTTATTTCACTAAAATGTCTCGTATTCGGAATAGTCTCTGAATTTCTAACTTTTTTTTTTTTTTTTTTGATGTCTTTGTAGACCTTGCCTCCAGTGGAGAGTGTCCAAACCACCAACAAGAATGATCCTAGTTAAAATTTATTACTTTATAACCTTGAGCTACAGTTAGTTTATTTCTTTCCAGATGCATGCTTTTCTTGTCGTTGAGCTCTTTGTTTTTCCCATGCTTTGATTTGAAAGTTCTTTTACTGTGAGAAAGGAACAAAAGAATCTTTGAAGATAATCTCGAGAACTTTGTATTATAGATTTCTCTAGTTATGACTAGTTCATTCTCACTTGTGTTATTGTGATTATCTTTATATTTATTCCAATTGGAATAGCTTTTTGTAATCTCCTCTTGCAATCGAAGGGTTGGCTTGGCATGCTCCTTCTATACGTTTTTTGATTCAACAACATTTAGAAGTAGGGTTCAACCTGTAAGCCGTATGTGATGTCACTAGAGCTATTTAACTGCCGC

mRNA sequence

AATAAATTGAAGTGTTATTTTAGGTGTTAAAAATACAAAAGGCAAATGGAATATTGTATCCAATAACGGTTTGATGAGCTGAAGCGAGGGCCGGATCCCTGAACCAAAGATTTAAAGAACGGTTCGCAGGCAGATCGAAGAATGGAACCTTGTTTGGGTATAGTTTAAAGAACGGTTCAATTGTCAAAATTGAAATCTGGGCGGTGGTGGGTGTTGGCGAAGCTGAATCATGGCTCGGAAATTCGGTGGTGGGTTGCGCCCCACTGGTACTCCCTCGGTGGCTTGGTCCTTTGTCGTCGTCGTCTCTTCGCTTCTCGCCGGCGCCTCCATCGTCCACAATATCTACAAACCAAATCTTACCTTGCCTCCAGTGGAGAGTGTCCAAACCACCAACAAGAATGATCCTAGTTAAAATTTATTACTTTATAACCTTGAGCTACAGTTAGTTTATTTCTTTCCAGATGCATGCTTTTCTTGTCGTTGAGCTCTTTGTTTTTCCCATGCTTTGATTTGAAAGTTCTTTTACTGTGAGAAAGGAACAAAAGAATCTTTGAAGATAATCTCGAGAACTTTGTATTATAGATTTCTCTAGTTATGACTAGTTCATTCTCACTTGTGTTATTGTGATTATCTTTATATTTATTCCAATTGGAATAGCTTTTTGTAATCTCCTCTTGCAATCGAAGGGTTGGCTTGGCATGCTCCTTCTATACGTTTTTTGATTCAACAACATTTAGAAGTAGGGTTCAACCTGTAAGCCGTATGTGATGTCACTAGAGCTATTTAACTGCCGC

Coding sequence (CDS)

ATGGCTCGGAAATTCGGTGGTGGGTTGCGCCCCACTGGTACTCCCTCGGTGGCTTGGTCCTTTGTCGTCGTCGTCTCTTCGCTTCTCGCCGGCGCCTCCATCGTCCACAATATCTACAAACCAAATCTTACCTTGCCTCCAGTGGAGAGTGTCCAAACCACCAACAAGAATGATCCTAGTTAA

Protein sequence

MARKFGGGLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQTTNKNDPS

Homology

[Close]

BLAST of Sed0021911 vs. NCBI nr
Match: KAG7016236.1 (hypothetical protein SDJN02_21342, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-20
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MARKFGGGLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQTTNKND 59
          MARKFGGGLRPTGTPSV WSFVVVVSSLLAGASIVHNIYKPNLTLPPV+SVQ T+K D
Sbjct: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLTLPPVDSVQATSKKD 58

[Close]

BLAST of Sed0021911 vs. NCBI nr
Match: KAA0037665.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK22809.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 7.1e-20
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MARKFGGGLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQTTNKNDP 60
          M +KFGGGLRPTGTPSV WSFVVVVSSLLAGASIVH+IYKPNLTLPP +S QTTNK DP
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKKDP 59

[Close]

BLAST of Sed0021911 vs. NCBI nr
Match: KGN51309.1 (hypothetical protein Csa_009362 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 6.7e-18
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MARKFGGGLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQ-TTNKNDP 60
          M +KFGGGLRPTGTPSV WSFVVV+SSLLAGASIVHNI+KPNLTLPP +S Q TTNK +P
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKENP 60

[Close]

BLAST of Sed0021911 vs. NCBI nr
Match: PKI46563.1 (hypothetical protein CRG98_032905 [Punica granatum])

HSP 1 Score: 90.5 bits (223), Expect = 5.3e-15
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MARKFGGGLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQTTNKND 59
          M RKFGGG  PTGTPS+AWS VVVV SLLAGASIVHNIYKPNLTLPP+ESV    K +
Sbjct: 1  MNRKFGGGRPPTGTPSLAWSSVVVVVSLLAGASIVHNIYKPNLTLPPIESVDGDKKKE 58

[Close]

BLAST of Sed0021911 vs. NCBI nr
Match: KAB2624078.1 (hypothetical protein D8674_015738 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 90.1 bits (222), Expect = 6.9e-15
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1  MARKFGGGLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQTTNKNDP 60
          M RKFGGG  PTGTPS+AWS VVVV+SLLAGAS+VHN+YKP+LTLPPV++V  TN   P
Sbjct: 1  MNRKFGGGRPPTGTPSLAWSSVVVVASLLAGASVVHNLYKPDLTLPPVDAVTGTNSKQP 59

[Close]

BLAST of Sed0021911 vs. ExPASy TrEMBL
Match: A0A5A7T878 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00480 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-20
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MARKFGGGLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQTTNKNDP 60
          M +KFGGGLRPTGTPSV WSFVVVVSSLLAGASIVH+IYKPNLTLPP +S QTTNK DP
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKKDP 59

[Close]

BLAST of Sed0021911 vs. ExPASy TrEMBL
Match: A0A0A0KQX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517080 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.2e-18
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MARKFGGGLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQ-TTNKNDP 60
          M +KFGGGLRPTGTPSV WSFVVV+SSLLAGASIVHNI+KPNLTLPP +S Q TTNK +P
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKENP 60

[Close]

BLAST of Sed0021911 vs. ExPASy TrEMBL
Match: A0A2I0IS49 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_032905 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.6e-15
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MARKFGGGLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQTTNKND 59
          M RKFGGG  PTGTPS+AWS VVVV SLLAGASIVHNIYKPNLTLPP+ESV    K +
Sbjct: 1  MNRKFGGGRPPTGTPSLAWSSVVVVVSLLAGASIVHNIYKPNLTLPPIESVDGDKKKE 58

[Close]

BLAST of Sed0021911 vs. ExPASy TrEMBL
Match: A0A445FZ73 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_049907 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-15
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1  MARKFGGGLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQTTNK 57
          M RKFGGG +PTGTPS+AWS VVVV SLLAGAS+VHNIYKPNLTLPPV+ V +T +
Sbjct: 20 MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQ 75

[Close]

BLAST of Sed0021911 vs. ExPASy TrEMBL
Match: A0A445FZM7 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_049907 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-15
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1  MARKFGGGLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQTTNK 57
          M RKFGGG +PTGTPS+AWS VVVV SLLAGAS+VHNIYKPNLTLPPV+ V +T +
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQ 56

[Close]

BLAST of Sed0021911 vs. TAIR 10
Match: AT4G26055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-14
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MARKFGGGLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQTTNKND 59
          M  KF GG +PTGTPS+AWS VVVV+SLLAGAS+VHNIYKP+LTLP +E+ +   K +
Sbjct: 1  MNNKF-GGKKPTGTPSLAWSTVVVVASLLAGASVVHNIYKPDLTLPQIENDEGDEKEE 57

[Close]

BLAST of Sed0021911 vs. TAIR 10
Match: AT5G57080.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26055.1); Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-13
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 8  GLRPTGTPSVAWSFVVVVSSLLAGASIVHNIYKPNLTLPPVESVQTTNKND 59
          G  PTGTPS+A S +VVV+SLLAGAS+VHNIYKP+L+LPP+ES +   K+D
Sbjct: 7  GKLPTGTPSLAMSTLVVVASLLAGASVVHNIYKPDLSLPPLESSEVAKKDD 57

The following BLAST results are available for this feature:

BLAST of Sed0021911 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016236.1	1.4e-20	91.38	hypothetical protein SDJN02_21342, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0037665.1	7.1e-20	86.44	putative transmembrane protein [Cucumis melo var. makuwa] >TYK22809.1 putative t...	[more]
KGN51309.1	6.7e-18	81.67	hypothetical protein Csa_009362 [Cucumis sativus]	[more]
PKI46563.1	5.3e-15	77.59	hypothetical protein CRG98_032905 [Punica granatum]	[more]
KAB2624078.1	6.9e-15	72.88	hypothetical protein D8674_015738 [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of Sed0021911 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0021911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T878	3.5e-20	86.44	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KQX5	3.2e-18	81.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517080 PE=4 SV=1	[more]
A0A2I0IS49	2.6e-15	77.59	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_032905 PE=4 SV=1	[more]
A0A445FZ73	3.4e-15	76.79	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_049907 PE=4 SV=1	[more]
A0A445FZM7	3.4e-15	76.79	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_049907 PE=4 SV=1	[more]

BLAST of Sed0021911 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26055.1	1.3e-14	65.52	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G57080.1	5.3e-13	66.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027858	Protein BRAWNIN	PFAM	PF14990	DUF4516	coord: 11..50 e-value: 4.7E-17 score: 61.4
IPR027858	Protein BRAWNIN	PANTHER	PTHR28492	HYPOTHETICAL PROTEIN LOC691921	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021911.1	Sed0021911.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034551	mitochondrial respiratory chain complex III assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity