Sed0021901 (gene) Chayote v1

Overview


Name	Sed0021901
Type	gene
Organism	Sechium edule (Chayote v1)
Description	histone H1-like
Location	LG08: 31162492 .. 31164080 (-)
RNA-Seq Expression	Sed0021901
Synteny	Sed0021901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAAACCAATGTCCATTCGATAACAAATATCTTTCGATATTAGATACCAAACAACTTCAAATTACATTCATTCGAAAGCTTAGATTCTAAGCTACAAATCCATTTTAAGATAACTAAAATTCATCAAGTATTAAGCAAGTTGTAATCTTAGAAAGTCAAGTGAAAAACACATCCAAAACTTTTTCATTCTCAATATCAACTTGCCTATCCATATCCATTCTTAACTCCTACTTTCAATACCCACCGTCAATAAATTCAAGATCTAACGGCCCATATTCAAACTTTCACGAAGATATCGATCCGCGTCAAATGGCTCTCAACCAATCACATAGCAGCAGTATGTTTCGACTTTGTTATATAAATTGCATTCAACCGTCACTCTCCTCATCGATATTCTCTGAAAATTATTCCCTATATTTCTTCTCCATCACTAATCGATTCGAATATGGCTTCCGCCGCCAATCCAGTTGTCCCCTCCGCCGCGCCGGTGGCTGTAGCAGCCGTAGCTCCGGCGAAGAAAGCACCGAAGGCTAAGAAGCCAACTTGTGCGAAGAAATCCAAAGCCTCGTCGACGCATCCTTCCTTCTTTCAGGTTTGTAAAATTAAATCTCTATTTCGATCGATCATGTTTGTTTCTTCTGTTTTTAATGTTCTGATCTGATTGAATTTTGGAATTGTTGTGTAGATGATAAGCGAAGCGATCGTTTCGTTGAAGGAGAGGACCGGATCGAGTCAATACGCCATTACGAAGTTCAGCGAGGAGAAGCACAAGCAGTTGCCGGCGAATTTCAGGAAGCTCTTGCTTGTTCATCTCAAGAAACTCGTTGCTGCTGATAAAATCGTGAAGGTCAAGAACTCCTACAAGCTTCCATCGGCGCGCTCGATTCAGGCGAAGGCAGTAGTGCCAGTCGCCGCTAAGAAACCGTCGAGCGCCAAGCCGAAGGCCGCCGCCGTCGCTAAACCGAAGGCGAAAACTGCTGTGGCTAAACCGAAGGTGAAAAGTGCTGTGGCTAAGCCGAAGGCGAAGGCGGTGGTGATACCGAAGCCGAAGGCGGCGGCGAAGGTGAAGAAGGTTGCTCCGAAGGCGAAACCTGCCGCGAAGGCTGCGAAGGTTGCGAAAACATTGTCCCGGACGTCGCCGGGGAAGAAAGTTGCGGCGGCGGCGAAGGCGAAGAAGGTCGTGGCGAAGAAGCCGAAGAGTGTGAAGTCGCCGGCGAGAAAAGTCCAGGCAAGGAAAGTCAAGAAATGAATGGGTTAGGGTTTGGATTGAATTCTAGGGTTTGGTTGTTGTTAATTACGACTGGTTTGGTAGGGATGTGTAAATTAGGCAGGCATGAGATCTGAGTTGTTGTTGTTATACACCATTTTATTGAAAATCAGTTAGATAAATTCTCAAGTGGTTGTGAAATTCATCTTTTTCTTCGATCTGTATCATCTTTTCTGTTTATCTTTTACGGTTCGGATTGTGAAGAAAAGCTTCGTAAGTTGTTTTAATGGCGTTTTGAAATCTAAATTGTCCACGCGTATTGCACGCGATTACTCTACAGCGTTGCCAGACTTAACTATAGTTAAAATATATTTGGGGAG

mRNA sequence

ATTTAAACCAATGTCCATTCGATAACAAATATCTTTCGATATTAGATACCAAACAACTTCAAATTACATTCATTCGAAAGCTTAGATTCTAAGCTACAAATCCATTTTAAGATAACTAAAATTCATCAAGTATTAAGCAAGTTGTAATCTTAGAAAGTCAAGTGAAAAACACATCCAAAACTTTTTCATTCTCAATATCAACTTGCCTATCCATATCCATTCTTAACTCCTACTTTCAATACCCACCGTCAATAAATTCAAGATCTAACGGCCCATATTCAAACTTTCACGAAGATATCGATCCGCGTCAAATGGCTCTCAACCAATCACATAGCAGCAGTATGTTTCGACTTTGTTATATAAATTGCATTCAACCGTCACTCTCCTCATCGATATTCTCTGAAAATTATTCCCTATATTTCTTCTCCATCACTAATCGATTCGAATATGGCTTCCGCCGCCAATCCAGTTGTCCCCTCCGCCGCGCCGGTGGCTGTAGCAGCCGTAGCTCCGGCGAAGAAAGCACCGAAGGCTAAGAAGCCAACTTGTGCGAAGAAATCCAAAGCCTCGTCGACGCATCCTTCCTTCTTTCAGATGATAAGCGAAGCGATCGTTTCGTTGAAGGAGAGGACCGGATCGAGTCAATACGCCATTACGAAGTTCAGCGAGGAGAAGCACAAGCAGTTGCCGGCGAATTTCAGGAAGCTCTTGCTTGTTCATCTCAAGAAACTCGTTGCTGCTGATAAAATCGTGAAGGTCAAGAACTCCTACAAGCTTCCATCGGCGCGCTCGATTCAGGCGAAGGCAGTAGTGCCAGTCGCCGCTAAGAAACCGTCGAGCGCCAAGCCGAAGGCCGCCGCCGTCGCTAAACCGAAGGCGAAAACTGCTGTGGCTAAACCGAAGGTGAAAAGTGCTGTGGCTAAGCCGAAGGCGAAGGCGGTGGTGATACCGAAGCCGAAGGCGGCGGCGAAGGTGAAGAAGGTTGCTCCGAAGGCGAAACCTGCCGCGAAGGCTGCGAAGGTTGCGAAAACATTGTCCCGGACGTCGCCGGGGAAGAAAGTTGCGGCGGCGGCGAAGGCGAAGAAGGTCGTGGCGAAGAAGCCGAAGAGTGTGAAGTCGCCGGCGAGAAAAGTCCAGGCAAGGAAAGTCAAGAAATGAATGGGTTAGGGTTTGGATTGAATTCTAGGGTTTGGTTGTTGTTAATTACGACTGGTTTGGTAGGGATGTGTAAATTAGGCAGGCATGAGATCTGAGTTGTTGTTGTTATACACCATTTTATTGAAAATCAGTTAGATAAATTCTCAAGTGGTTGTGAAATTCATCTTTTTCTTCGATCTGTATCATCTTTTCTGTTTATCTTTTACGGTTCGGATTGTGAAGAAAAGCTTCGTAAGTTGTTTTAATGGCGTTTTGAAATCTAAATTGTCCACGCGTATTGCACGCGATTACTCTACAGCGTTGCCAGACTTAACTATAGTTAAAATATATTTGGGGAG

Coding sequence (CDS)

ATGGCTTCCGCCGCCAATCCAGTTGTCCCCTCCGCCGCGCCGGTGGCTGTAGCAGCCGTAGCTCCGGCGAAGAAAGCACCGAAGGCTAAGAAGCCAACTTGTGCGAAGAAATCCAAAGCCTCGTCGACGCATCCTTCCTTCTTTCAGATGATAAGCGAAGCGATCGTTTCGTTGAAGGAGAGGACCGGATCGAGTCAATACGCCATTACGAAGTTCAGCGAGGAGAAGCACAAGCAGTTGCCGGCGAATTTCAGGAAGCTCTTGCTTGTTCATCTCAAGAAACTCGTTGCTGCTGATAAAATCGTGAAGGTCAAGAACTCCTACAAGCTTCCATCGGCGCGCTCGATTCAGGCGAAGGCAGTAGTGCCAGTCGCCGCTAAGAAACCGTCGAGCGCCAAGCCGAAGGCCGCCGCCGTCGCTAAACCGAAGGCGAAAACTGCTGTGGCTAAACCGAAGGTGAAAAGTGCTGTGGCTAAGCCGAAGGCGAAGGCGGTGGTGATACCGAAGCCGAAGGCGGCGGCGAAGGTGAAGAAGGTTGCTCCGAAGGCGAAACCTGCCGCGAAGGCTGCGAAGGTTGCGAAAACATTGTCCCGGACGTCGCCGGGGAAGAAAGTTGCGGCGGCGGCGAAGGCGAAGAAGGTCGTGGCGAAGAAGCCGAAGAGTGTGAAGTCGCCGGCGAGAAAAGTCCAGGCAAGGAAAGTCAAGAAATGA

Protein sequence

MASAANPVVPSAAPVAVAAVAPAKKAPKAKKPTCAKKSKASSTHPSFFQMISEAIVSLKERTGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSYKLPSARSIQAKAVVPVAAKKPSSAKPKAAAVAKPKAKTAVAKPKVKSAVAKPKAKAVVIPKPKAAAKVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAAKAKKVVAKKPKSVKSPARKVQARKVKK

Homology

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BLAST of Sed0021901 vs. NCBI nr
Match: XP_022142941.1 (histone H1-like [Momordica charantia])

HSP 1 Score: 259.6 bits (662), Expect = 2.6e-65
Identity = 189/267 (70.79%), Postives = 205/267 (76.78%), Query Frame = 0


Query: 1   MASAANPVVPSAAPVAVAA------------VAPAKKAPKAKKPTCAKKSKASSTHPSFF 60
           MASAA+P+VPS AP A AA             A + KA KAKKP+ AK+ K+S THP FF
Sbjct: 1   MASAADPIVPSDAPAADAAEVLTVANDAKPKKAASSKASKAKKPSGAKRPKSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSY 120
           QMISEAIVSLKERTGSSQYAITKFSEEKHKQLP+NFRKLLLVHLKKLVAADK+VKVKNSY
Sbjct: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAVVPVAAKKPSSAKPKAAAVAKPKAKTAVAKPKVKSAVAKPKAKAVVIP 180
           KLPSARSIQAKA  PVAAKKP+S+K KAAA  K KA  AV KPK K+AV KPK KAVV P
Sbjct: 121 KLPSARSIQAKAAAPVAAKKPASSKLKAAASVKKKA--AVVKPKAKTAV-KPKPKAVVKP 180

Query: 181 -------------------KPKAAAKVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAA 237
                              KPKAAAKV K A KAKPAA+ AKVAKTL++TSPGK+ A AA
Sbjct: 181 KTISKSKVVAKPKAAAAAAKPKAAAKV-KAAAKAKPAARPAKVAKTLTQTSPGKRAAPAA 240

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BLAST of Sed0021901 vs. NCBI nr
Match: KAG6599320.1 (Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-64
Identity = 192/264 (72.73%), Postives = 205/264 (77.65%), Query Frame = 0


Query: 1   MASAANPVVPSAAPVAVAAV------------APAKKAPKAKKPTCAKKSKASSTHPSFF 60
           M+SAA+PV  S AP  VAAV            A A KA KAKKP+ AK++++S THP FF
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKFSEEKHKQLP+NFRKLLLVHLKKLVAADK+VKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAVVPVAAKKPSSAKPKA------AAVAKPKAKTAVAKPKVKSAVAKPKA 180
           KLPSARS  A A  PV AKKP+S+K KA      AAVAKPKAKTAV KPK K AVAKPKA
Sbjct: 121 KLPSARSKAAAA--PVVAKKPASSKLKAAVSVKKAAVAKPKAKTAV-KPKPK-AVAKPKA 180

Query: 181 ----------KAVVIPKPKAAAKVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAAKAK 237
                     KAV   K KAA KVKKVAPK KPAAK AKVAKTLSRTSPGKK A AAKAK
Sbjct: 181 AAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAK 240

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BLAST of Sed0021901 vs. NCBI nr
Match: XP_022946127.1 (histone H1-like [Cucurbita moschata] >KAG7030316.1 Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.8 bits (652), Expect = 3.7e-64
Identity = 191/264 (72.35%), Postives = 207/264 (78.41%), Query Frame = 0


Query: 1   MASAANPVVPSAAPVAVAAV------------APAKKAPKAKKPTCAKKSKASSTHPSFF 60
           M+SAA+PV  S AP  VAAV            A A KA KAKKP+ AK++++S THP FF
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKFSEEKHK+LP+NFRKLLLVHLKKLVAADK+VKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAVVPVAAKKPSSAKPKA------AAVAKPKAKTAVAKPKVKSAVAKPK- 180
           KLPSARS  A A  PV AKKP+S+K KA      AAVAKPKAKTAV KPK K AVAKPK 
Sbjct: 121 KLPSARSKAAAA--PVVAKKPASSKLKAAVSVKKAAVAKPKAKTAV-KPKPK-AVAKPKS 180

Query: 181 -AKAVVIPKPKAAA--------KVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAAKAK 237
            AK+ V+ KPKA A        KVKKVAPK KPAAK AKVAKTLSRTSPGKK A AAKAK
Sbjct: 181 AAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAK 240

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BLAST of Sed0021901 vs. NCBI nr
Match: XP_022999095.1 (histone H1-like [Cucurbita maxima])

HSP 1 Score: 255.4 bits (651), Expect = 4.9e-64
Identity = 190/264 (71.97%), Postives = 203/264 (76.89%), Query Frame = 0


Query: 1   MASAANPVVPSAAPVAVAAVAP------------AKKAPKAKKPTCAKKSKASSTHPSFF 60
           M+SAA+PV  S AP  VA VAP            A KA KAKKP+ AK++++S THP FF
Sbjct: 1   MSSAADPVASSDAPATVAVVAPPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKFSEEKHKQLP+NFRKLLLVHLKKLVAADK+VKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAVVPVAAKKPSSAKPKA------AAVAKPKAKTAVAKPKVKSAVAKPKA 180
           KLPSARS  A A  PV AKKP+S+K KA      AAVAKPKAKTAV KPK K  VAKPKA
Sbjct: 121 KLPSARSKAAAA--PVVAKKPASSKLKAAVSVKKAAVAKPKAKTAV-KPKPK-VVAKPKA 180

Query: 181 ----------KAVVIPKPKAAAKVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAAKAK 237
                     KAV   K KAA KVKKVAPK KPAAK AKVAKTLSR SPGKK A AAKAK
Sbjct: 181 AAKSKVVGKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRASPGKKAAPAAKAK 240

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BLAST of Sed0021901 vs. NCBI nr
Match: XP_023521173.1 (histone H1-like [Cucurbita pepo subsp. pepo] >XP_023521452.1 histone H1-like [Cucurbita pepo subsp. pepo] >XP_023547297.1 histone H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.2 bits (648), Expect = 1.1e-63
Identity = 190/264 (71.97%), Postives = 203/264 (76.89%), Query Frame = 0


Query: 1   MASAANPVVPSAAPVAVAAV------------APAKKAPKAKKPTCAKKSKASSTHPSFF 60
           M+SAA+PV  S AP  VA V            A A KA KAKKP+ AK++++S THP FF
Sbjct: 1   MSSAADPVASSDAPATVAVVAQPAENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKFSEEKHKQLP+NFRKLLLVHLKKLVAADK+VKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAVVPVAAKKPSSAKPKA------AAVAKPKAKTAVAKPKVKSAVAKPKA 180
           KLPSARS  A A  PV AKKP+S+K KA      AAVAKPKAKTAV KPK K  VAKPKA
Sbjct: 121 KLPSARSKAAAA--PVVAKKPASSKLKAAVSVKKAAVAKPKAKTAV-KPKPK-VVAKPKA 180

Query: 181 ----------KAVVIPKPKAAAKVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAAKAK 237
                     KAV   K KAA KVKKVAPK KPAAK AKVAKTLSRTSPGKK A AAKAK
Sbjct: 181 AAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAK 240

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BLAST of Sed0021901 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-35
Identity = 128/214 (59.81%), Postives = 144/214 (67.29%), Query Frame = 0


Query: 21  APAKKAPKAKKPTCA---KKSKASSTHPSFFQMISEAIVSLKERTGSSQYAITKFSEEKH 80
           A A K PK KK   A    KSK +S+HPSFF+MIS+AI +LKERTGSSQYAI KF E+KH
Sbjct: 25  AAAVKVPKEKKKVIAAKKPKSKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKH 84

Query: 81  KQLPANFRKLLLVHLKKLVAADKIVKVKNSYKLPSARSIQAKAVVPVAAKKPSSAKPKAA 140
           KQLP+NFRKLLL HLKKLVA+ K+VKVKNS+KLPSAR+    A  P  AKKP+  KPK A
Sbjct: 85  KQLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPSARA----APAPALAKKPTIPKPKVA 144

Query: 141 AVAKPKAKTAVAKPKVKSAV-AKPKAKAVVIPKPKAAAKVK-KVAPKAKP-AAKAAKVAK 200
             AKPK     AKPK K+ V AK KA    + K   AAK K K A K K  AAK AKVAK
Sbjct: 145 --AKPKTAKIGAKPKAKAKVAAKTKATTKTVAKKIPAAKPKAKTAGKPKTVAAKPAKVAK 204

Query: 201 TLSRTSPGKKVAAAAKAKKVVAKKPKSVKSPARK 229
           T +  SPGKK       K V  KK K+VKSPA K
Sbjct: 205 TAAVASPGKK-------KAVPVKKVKTVKSPAGK 225

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BLAST of Sed0021901 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-33
Identity = 126/251 (50.20%), Postives = 150/251 (59.76%), Query Frame = 0


Query: 22  PAKKAPKAKKPTCAK------------KSKASSTHPSFFQMISEAIVSLKERTGSSQYAI 81
           PA K  K+KK T AK            K K +S+HP++ +MI +AIV+LKERTGSSQYAI
Sbjct: 28  PAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAI 87

Query: 82  TKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSYKLPSARSIQA-KAVVPVAAKK 141
            KF EEKHK LP  FRKLLLV+LK+LVA++K+VKVK S+K+PSARS    K   PV  K 
Sbjct: 88  QKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAPVKKKA 147

Query: 142 PSSAKPK---AAAVAKPKAKTA-----------------VAKPKVKSAVAKPKAKAVVIP 201
              AKPK   AAAVA  KAK A                  AKPK K   AKPK+K+V   
Sbjct: 148 TVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVA-- 207

Query: 202 KPKAAAKVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAAKAKKVVAKKPK---SVKSP 237
              A +K K VA K K   + AK ++T +RTSPGKKVAA AK   V  K P     VKSP
Sbjct: 208 ---AVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVKSP 267

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BLAST of Sed0021901 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-32
Identity = 128/253 (50.59%), Postives = 150/253 (59.29%), Query Frame = 0


Query: 23  AKKAPKAKKPTCAKKSKASSTHPSFFQMISEAIVSLKERTGSSQYAITKFSEEKHKQLPA 82
           AKK  KAKKP   +K  A+ THP +F+MI +AIV+LKERTGSSQ+AITKF EEK K LP+
Sbjct: 35  AKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPS 94

Query: 83  NFRKLLLVHLKKLVAADKIVKVKNSYKLPSARSIQAKAV----VPVAAKKPSSAKPKA-- 142
           NF+KLLL  LKK VA++K+VKVKNSYKLPS     A AV     P AAK   +AKPKA  
Sbjct: 95  NFKKLLLTQLKKFVASEKLVKVKNSYKLPSGSKPAAAAVPAKKKPAAAKSKPAAKPKAAV 154

Query: 143 ------------------AAVAKPKAK---TAVAKPKVKS-AVAKPKAKAVVIPKPKAAA 202
                             AA AKP AK    A AKP  K+  VAK K KA    KPKAA 
Sbjct: 155 KPKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAV 214

Query: 203 KVKKVAPKAKPAAK--------AAKVAKTLSRTSPGKKVA-AAAKAKKVVAKK--PKSVK 237
           K K    K K A K         AKVAKT +RT+P +K A  A  AKK   KK   K+VK
Sbjct: 215 KPKAAPAKTKAAVKPNLKAKTTTAKVAKTATRTTPSRKAAPKATPAKKEPVKKAPAKNVK 274

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BLAST of Sed0021901 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-30
Identity = 126/239 (52.72%), Postives = 148/239 (61.92%), Query Frame = 0


Query: 18  AAVAPAKKAPKAKKPTCAKKSKASSTHPSFFQMISEAIVSLKERTGSSQYAITKFSEEKH 77
           A V   KKA K  KP  A K +  ++HP++ +MI +AIVSLKE+ GSSQYAI KF EEK 
Sbjct: 37  AEVEKTKKA-KGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQ 96

Query: 78  KQLPANFRKLLLVHLKKLVAADKIVKVKNSYKLPSARSIQAKAVVPVAAKKPSSAKPKAA 137
           KQLPANF+KLLL +LKK VA+ K++KVK S+KL +            AAKKP+ AKPKA 
Sbjct: 97  KQLPANFKKLLLQNLKKNVASGKLIKVKGSFKLSA------------AAKKPAVAKPKAK 156

Query: 138 AVAKPKAKTA--VAKPKVKSAVAKP----KAKAVVIPKPKAAAKVKKVAPKAKPAA---- 197
             AK K+  A   AKPK K AV KP    KAKAV     KAAAK K VA K KP A    
Sbjct: 157 TAAKAKSVKAKPAAKPKAK-AVVKPKVASKAKAVAAKPKKAAAKPKTVAAKTKPTAAKPK 216

Query: 198 ---------KAAKVAKTLSRTSPGKKVAAAAK--AKKVVAK--KPKSVKSPARKVQARK 234
                    K AKVAKT  +T+PGKKVAA  K  AKKV  K  K KSVKSP +KV  ++
Sbjct: 217 AVVKPKSKVKPAKVAKTSVKTTPGKKVAAVKKVAAKKVPVKSVKAKSVKSPVKKVSVKR 261

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BLAST of Sed0021901 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 7.7e-28
Identity = 127/244 (52.05%), Postives = 141/244 (57.79%), Query Frame = 0


Query: 5   ANPVVPSAAPVAVAAVAPAKKAPKAKKPTCAKKSKASSTHPSFFQMISEAIVSLKERTGS 64
           A P  P+ AP A AA A A KA KA  P    K +AS TH  + +M+SEAI SLKERTGS
Sbjct: 15  AAPEAPADAPAAPAADANAAKAKKATAP----KKRASPTHLPYAEMVSEAITSLKERTGS 74

Query: 65  SQYAITKFSEEKHK-QLPANFRKLLLVHLKKLVAADKIVKVKNSYKLPSARSIQAKAVVP 124
           S YAI KF E+KHK +LP NFRKLL V LKKLVA  K+ KVKNSYKL SA     K    
Sbjct: 75  SSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSATKPNPKP--K 134

Query: 125 VAAKKPSSAKPKAAAVAKPKAKT-AVAKPKVK-------SAVAKPKAKAVVIPKPKAAAK 184
            A KKP +   K  A AKPKAKT A AKP  K        AV KPK  A    KP A AK
Sbjct: 135 AAPKKPKTGAKKPKAAAKPKAKTPAKAKPATKPKPAAKPKAVVKPKTPAKPKAKPAAKAK 194

Query: 185 VKKVAPKAKPAAK---AAKVAKTLSRTSPGKKVAAAAKAKKVVAKKPKSVKSPARKVQAR 237
            K    K KP AK    AK AKT ++ +PGKK    A AKK  A   K   +P RK  +R
Sbjct: 195 PKTAGAKPKPLAKKAGRAKAAKTSAKDTPGKK----APAKK--AAPSKKAATPVRKAPSR 246

[Close]

BLAST of Sed0021901 vs. ExPASy TrEMBL
Match: A0A6J1CNP7 (histone H1-like OS=Momordica charantia OX=3673 GN=LOC111012938 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.3e-65
Identity = 189/267 (70.79%), Postives = 205/267 (76.78%), Query Frame = 0


Query: 1   MASAANPVVPSAAPVAVAA------------VAPAKKAPKAKKPTCAKKSKASSTHPSFF 60
           MASAA+P+VPS AP A AA             A + KA KAKKP+ AK+ K+S THP FF
Sbjct: 1   MASAADPIVPSDAPAADAAEVLTVANDAKPKKAASSKASKAKKPSGAKRPKSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSY 120
           QMISEAIVSLKERTGSSQYAITKFSEEKHKQLP+NFRKLLLVHLKKLVAADK+VKVKNSY
Sbjct: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAVVPVAAKKPSSAKPKAAAVAKPKAKTAVAKPKVKSAVAKPKAKAVVIP 180
           KLPSARSIQAKA  PVAAKKP+S+K KAAA  K KA  AV KPK K+AV KPK KAVV P
Sbjct: 121 KLPSARSIQAKAAAPVAAKKPASSKLKAAASVKKKA--AVVKPKAKTAV-KPKPKAVVKP 180

Query: 181 -------------------KPKAAAKVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAA 237
                              KPKAAAKV K A KAKPAA+ AKVAKTL++TSPGK+ A AA
Sbjct: 181 KTISKSKVVAKPKAAAAAAKPKAAAKV-KAAAKAKPAARPAKVAKTLTQTSPGKRAAPAA 240

[Close]

BLAST of Sed0021901 vs. ExPASy TrEMBL
Match: A0A6J1G2W2 (histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.8e-64
Identity = 191/264 (72.35%), Postives = 207/264 (78.41%), Query Frame = 0


Query: 1   MASAANPVVPSAAPVAVAAV------------APAKKAPKAKKPTCAKKSKASSTHPSFF 60
           M+SAA+PV  S AP  VAAV            A A KA KAKKP+ AK++++S THP FF
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKFSEEKHK+LP+NFRKLLLVHLKKLVAADK+VKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAVVPVAAKKPSSAKPKA------AAVAKPKAKTAVAKPKVKSAVAKPK- 180
           KLPSARS  A A  PV AKKP+S+K KA      AAVAKPKAKTAV KPK K AVAKPK 
Sbjct: 121 KLPSARSKAAAA--PVVAKKPASSKLKAAVSVKKAAVAKPKAKTAV-KPKPK-AVAKPKS 180

Query: 181 -AKAVVIPKPKAAA--------KVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAAKAK 237
            AK+ V+ KPKA A        KVKKVAPK KPAAK AKVAKTLSRTSPGKK A AAKAK
Sbjct: 181 AAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAK 240

[Close]

BLAST of Sed0021901 vs. ExPASy TrEMBL
Match: A0A6J1KEC3 (histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.4e-64
Identity = 190/264 (71.97%), Postives = 203/264 (76.89%), Query Frame = 0


Query: 1   MASAANPVVPSAAPVAVAAVAP------------AKKAPKAKKPTCAKKSKASSTHPSFF 60
           M+SAA+PV  S AP  VA VAP            A KA KAKKP+ AK++++S THP FF
Sbjct: 1   MSSAADPVASSDAPATVAVVAPPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKFSEEKHKQLP+NFRKLLLVHLKKLVAADK+VKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSIQAKAVVPVAAKKPSSAKPKA------AAVAKPKAKTAVAKPKVKSAVAKPKA 180
           KLPSARS  A A  PV AKKP+S+K KA      AAVAKPKAKTAV KPK K  VAKPKA
Sbjct: 121 KLPSARSKAAAA--PVVAKKPASSKLKAAVSVKKAAVAKPKAKTAV-KPKPK-VVAKPKA 180

Query: 181 ----------KAVVIPKPKAAAKVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAAKAK 237
                     KAV   K KAA KVKKVAPK KPAAK AKVAKTLSR SPGKK A AAKAK
Sbjct: 181 AAKSKVVGKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRASPGKKAAPAAKAK 240

[Close]

BLAST of Sed0021901 vs. ExPASy TrEMBL
Match: A0A5D3D4H1 (Histone H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001600 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 5.8e-63
Identity = 189/267 (70.79%), Postives = 202/267 (75.66%), Query Frame = 0


Query: 1   MASAANPVVPSAAPVAVAAV-------------APAKKAPKAKKPTCAKKSKASSTHPSF 60
           M+SAA+PVV S AP A  A              A A KA KAKKP+ AKK+++S THP F
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  FQMISEAIVSLKERTGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNS 120
            QMISEAIVSLKERTGSSQYAITKF+EEKHKQLP+NFRKLLLVHLKKLVAADK+VKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSIQAK--AVVPVAAKKPSSAKPKAA------AVAKPKAKTAVAKPKVKSAVAK 180
           YKLPSARSIQAK  A  PVA KKP S+K KA       AVAKPKAKTA AKPK K AVAK
Sbjct: 121 YKLPSARSIQAKAAAAAPVATKKPVSSKLKAVASIKKPAVAKPKAKTA-AKPKPK-AVAK 180

Query: 181 PKAKAV----VIPKPKAAA------KVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAA 237
           PK K V     + KPK AA      KVKKVAPK K  AKA KVAKTLSRTSPGK+ A AA
Sbjct: 181 PKPKTVTKSKTVAKPKTAAKTKAAEKVKKVAPKPKAGAKATKVAKTLSRTSPGKRAAPAA 240

[Close]

BLAST of Sed0021901 vs. ExPASy TrEMBL
Match: A0A1S3C278 (histone H1-like OS=Cucumis melo OX=3656 GN=LOC103496189 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 3.8e-62
Identity = 187/269 (69.52%), Postives = 200/269 (74.35%), Query Frame = 0


Query: 1   MASAANPVVPSAAPVAVAAV-------------APAKKAPKAKKPTCAKKSKASSTHPSF 60
           M+SAA+PVV S AP A  A              A A KA KAKKP+ AKK+++S THP F
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  FQMISEAIVSLKERTGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNS 120
            QMISEAIVSLKERTGSSQYAITKF+EEKHKQLP+NFRKLLLVHLKKLVAADK+VKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARSIQAK--AVVPVAAKKPSSAKPKAA------AVAKPKAKT-------AVAKPK 180
           YKLPSARSIQAK  A  PVA KKP S+K KA       AVAKPKAKT       AVAKPK
Sbjct: 121 YKLPSARSIQAKAAAAAPVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKSKPKAVAKPK 180

Query: 181 VKS-----AVAKPKAKAVVIPKPKAAAKVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAA 237
            K+      VAKPK  A    K KAA KVKKVAPK K  AKA KVAKTLSRTSPGK+ A 
Sbjct: 181 PKTVTKSKTVAKPKTAA----KTKAAEKVKKVAPKPKAGAKATKVAKTLSRTSPGKRAAP 240

[Close]

BLAST of Sed0021901 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-34
Identity = 126/251 (50.20%), Postives = 150/251 (59.76%), Query Frame = 0


Query: 22  PAKKAPKAKKPTCAK------------KSKASSTHPSFFQMISEAIVSLKERTGSSQYAI 81
           PA K  K+KK T AK            K K +S+HP++ +MI +AIV+LKERTGSSQYAI
Sbjct: 28  PAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAI 87

Query: 82  TKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSYKLPSARSIQA-KAVVPVAAKK 141
            KF EEKHK LP  FRKLLLV+LK+LVA++K+VKVK S+K+PSARS    K   PV  K 
Sbjct: 88  QKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAPVKKKA 147

Query: 142 PSSAKPK---AAAVAKPKAKTA-----------------VAKPKVKSAVAKPKAKAVVIP 201
              AKPK   AAAVA  KAK A                  AKPK K   AKPK+K+V   
Sbjct: 148 TVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVA-- 207

Query: 202 KPKAAAKVKKVAPKAKPAAKAAKVAKTLSRTSPGKKVAAAAKAKKVVAKKPK---SVKSP 237
              A +K K VA K K   + AK ++T +RTSPGKKVAA AK   V  K P     VKSP
Sbjct: 208 ---AVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVKSP 267

[Close]

BLAST of Sed0021901 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-27
Identity = 128/261 (49.04%), Postives = 151/261 (57.85%), Query Frame = 0


Query: 13  APVAVAAV--APAKKAPKAKK---------PTCAKKSKASSTHPSFFQMISEAIVSLKER 72
           APV  AAV   PA K  K K             A K +  S+HP++ +MI +AIV+LKER
Sbjct: 20  APVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTLKER 79

Query: 73  TGSSQYAITKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSYKLPSARSIQAKAV 132
           TGSSQYAI KF EEK K+LP  FRKLLL++LK+LVA+ K+VKVK S+KLPSA    AKA 
Sbjct: 80  TGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSA---SAKAS 139

Query: 133 VPVAAKK---PSSAKPKAAAVAKPKAKTAVAKPKVKSAVAKPK--------AKAVVIPKP 192
            P AA +   P+  KP   AV K K K A A    K+   KPK        AKA   P P
Sbjct: 140 SPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAKAKPVP 199

Query: 193 KA-AAKVKKVAPKAKPAAKA--AKVAKTLSRTSPGKKVAAAAK------------AKKVV 237
           +A AA  K+ A  AKP AKA  AK AKT   TSP KK  AA K             KKVV
Sbjct: 200 RATAAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATKKKTPVKKVV 259

[Close]

BLAST of Sed0021901 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-26
Identity = 103/230 (44.78%), Postives = 124/230 (53.91%), Query Frame = 0


Query: 22  PAKKAPKAKKPTCAK------------KSKASSTHPSFFQMISEAIVSLKERTGSSQYAI 81
           PA K  K+KK T AK            K K +S+HP++ +MI +AIV+LKERTGSSQYAI
Sbjct: 28  PAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAI 87

Query: 82  TKFSEEKHKQLPANFRKLLLVHLKKLVAADKIVKVKNSYKLPSARSIQAKAVVPVAAKKP 141
            KF EEKHK LP  FRKLLLV+LK+LVA++K+VKVK S+K+PSAR               
Sbjct: 88  QKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSAR--------------- 147

Query: 142 SSAKPKAAAVAKPKAKTAVAKPKVKSAVAKPKAKAVVIPKPKAAAKVKKVAPKAKPAAKA 201
           S+A PK AA  K KA T VAKP                                      
Sbjct: 148 SAATPKPAAPVKKKA-TVVAKP-------------------------------------- 202

Query: 202 AKVAKTLSRTSPGKKVAAAAKAKKVVAKKPK---SVKSPARKVQARKVKK 237
            K ++T +RTSPGKKVAA AK   V  K P     VKSPA++   RK KK
Sbjct: 208 -KASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVKSPAKRASTRKAKK 202

[Close]

BLAST of Sed0021901 vs. TAIR 10
Match: AT2G18050.1 (histone H1-3 )

HSP 1 Score: 61.6 bits (148), Expect = 9.7e-10
Identity = 66/169 (39.05%), Postives = 88/169 (52.07%), Query Frame = 0


Query: 24  KKAPKAKKPTCAKKSKASSTHPSFFQMISEAIVSLKERTGSSQYAITKFSEEKHKQ-LPA 83
           KK P AKKP    +   ++THP +FQMI EA++ LKE+ GSS YAI K  EEKHK  LP 
Sbjct: 8   KKTPAAKKP----RKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPE 67

Query: 84  NFRKLLLVHLKKLVAADKIVKVKNSYKLPS-----ARSIQAKAVVPVAAKKPSSAKPKAA 143
           +FRK L + LK  VA  K+VK++ SYKL        R    K    +  +     K   +
Sbjct: 68  SFRKTLSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRS 127

Query: 144 AVAKPKAKTAVAKPKVKSAVAKPKAKAVVIPKPKAAAKVKKVAPKAKPA 187
           +  +PK   +V K + K  V K +      PK   ++  KK A KA  A
Sbjct: 128 SSTRPKKTVSVNKQEKKRKVKKARQ-----PKSIKSSVGKKKAMKASAA 167

[Close]

BLAST of Sed0021901 vs. TAIR 10
Match: AT2G18050.2 (histone H1-3 )

HSP 1 Score: 43.9 bits (102), Expect = 2.1e-04
Identity = 54/143 (37.76%), Postives = 72/143 (50.35%), Query Frame = 0


Query: 50  MISEAIVSLKERTGSSQYAITKFSEEKHKQ-LPANFRKLLLVHLKKLVAADKIVKVKNSY 109
           MI EA++ LKE+ GSS YAI K  EEKHK  LP +FRK L + LK  VA  K+VK++ SY
Sbjct: 1   MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASY 60

Query: 110 KLPS-----ARSIQAKAVVPVAAKKPSSAKPKAAAVAKPKAKTAVAKPKVKSAVAKPKAK 169
           KL        R    K    +  +     K   ++  +PK   +V K + K  V K +  
Sbjct: 61  KLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTRPKKTVSVNKQEKKRKVKKARQ- 120

Query: 170 AVVIPKPKAAAKVKKVAPKAKPA 187
               PK   ++  KK A KA  A
Sbjct: 121 ----PKSIKSSVGKKKAMKASAA 138

The following BLAST results are available for this feature:

BLAST of Sed0021901 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142941.1	2.6e-65	70.79	histone H1-like [Momordica charantia]	[more]
KAG6599320.1	1.3e-64	72.73	Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022946127.1	3.7e-64	72.35	histone H1-like [Cucurbita moschata] >KAG7030316.1 Histone H1.2 [Cucurbita argyr...	[more]
XP_022999095.1	4.9e-64	71.97	histone H1-like [Cucurbita maxima]	[more]
XP_023521173.1	1.1e-63	71.97	histone H1-like [Cucurbita pepo subsp. pepo] >XP_023521452.1 histone H1-like [Cu...	[more]

BLAST of Sed0021901 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5W4	1.0e-35	59.81	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
P26569	2.1e-33	50.20	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
P37218	1.8e-32	50.59	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
P08283	1.3e-30	52.72	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
P23444	7.7e-28	52.05	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]

BLAST of Sed0021901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNP7	1.3e-65	70.79	histone H1-like OS=Momordica charantia OX=3673 GN=LOC111012938 PE=3 SV=1	[more]
A0A6J1G2W2	1.8e-64	72.35	histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1	[more]
A0A6J1KEC3	2.4e-64	71.97	histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1	[more]
A0A5D3D4H1	5.8e-63	70.79	Histone H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G0016...	[more]
A0A1S3C278	3.8e-62	69.52	histone H1-like OS=Cucumis melo OX=3656 GN=LOC103496189 PE=3 SV=1	[more]

BLAST of Sed0021901 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30620.1	1.5e-34	50.20	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	1.3e-27	49.04	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	1.1e-26	44.78	winged-helix DNA-binding transcription factor family protein	[more]
AT2G18050.1	9.7e-10	39.05	histone H1-3	[more]
AT2G18050.2	2.1e-04	37.76	histone H1-3	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 57..74 score: 38.89 coord: 187..206 score: 20.56 coord: 30..51 score: 43.43 coord: 165..182 score: 39.51 coord: 129..143 score: 33.33
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 41..107 e-value: 8.9E-29 score: 111.6
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 44..110 e-value: 7.9E-15 score: 55.0
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 43..112 score: 27.556435
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 41..120 e-value: 2.68503E-12 score: 58.7867
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 38..121 e-value: 5.8E-17 score: 63.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..236
None	No IPR available	PANTHER	PTHR11467:SF128	SUBFAMILY NOT NAMED	coord: 5..236
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 5..236
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 41..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021901.1	Sed0021901.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding