Sed0021888 (gene) Chayote v1

Overview


Name	Sed0021888
Type	gene
Organism	Sechium edule (Chayote v1)
Description	zf-CCHC_4 domain-containing protein
Location	LG11: 25269231 .. 25270458 (-)
RNA-Seq Expression	Sed0021888
Synteny	Sed0021888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGATATCTGAAAAATGGAGGAAGTTAAAATTGATAGATAAAGAAGAAACAAAGGTTGATCTTGATGAAATTAAATGTACTGTTTCTAAGGAGAATTTTAGATTAAGTGTAGCTGCTAAGGTTCTCTCTAATCGCCCAGTCAATGTTGAAGCATTCCGAAATGTTATGAAGTCAGTTTGGAGGGTGCATCATGAAACCAAGATTGAATTTGCAGGTAATAATATTTTCTTGATTCTCTTCAAGAATATAATAGACAAAAACAGAGTTCTCAATTTTAGTCCTTGATCTTTTGACAAATCTTTAATTGTCTTGACTTCTCCAAAGGAAAATGAGAGTCTTAGTGATATTGAATTCGAATTTTGTGCATTTTGGATTCAAATTCACAATGTACCAATCAGAAACATATTTATAGAAACAGCAAAAATTTTAGGACAAAGAATTGGAGATATAGAAGAATTTGATTGGGATGGTACAGTTGATTGGATGGGTCCAGTGCTTAGAGTGCGGGTTAGTATCAACATTATGGAACCACTTTAAAGAGGTTTATTTCTAAGAAGTAAAGAGGGTTCAAGAATTTGGTGCCTGTTGCTTTATGAGAAAATTCCAGATTTTCGCTATGCCTGTGGAATGTTTGGTCATTCGTCCCGAGAATGTTCAATGGTGACAGATTATAATTCTGAGGGGTTTTCATATAACTATGGGGATTGGCTGAAGGCTTTGTACGTCAAGAAAGTTGGAGGCACCGTCTGGGACGAATGGGACTCTGATGCAAAGGGGGGGCGTGGATGACCAAAGGATAGATTTGGAAATGATGAAAGGGGTAGTTCAGGTGGACGTAAGGGAAGAAGTGTCATTTCTAAATTGGCGCTCTTTGGAAGTTCGTGGTAATTTTGAGAATTTTTCAAATTCAGAACTGAATGAAATTGGCTCTGATAGTCAAATTATTGTGCAACACGTTAAGGTTTTAGACACTGAGAAAGATATGGAAAGTAATGAAAAATCTATGGCTAGAAGAATCAATATGACAACCCCTTCTGAAGTTAAGAAAAGTCAAAATGAATCCATATCAGAGAAGAATTATGGCAAACAACTGTTGATATCAAACTCTTCTGAGTATTTTAAAGGAAAAGGTAAATTAGATGAAGATCTCAATGCCAATATTAAATCTTTCTCTTCTAGACATGAATCCCATGAAGATATGGAAGAAGATAGACGAATTTAG

mRNA sequence

ATGGAGGAGATATCTGAAAAATGGAGGAAGTTAAAATTGATAGATAAAGAAGAAACAAAGGTTGATCTTGATGAAATTAAATGTACTGTTTCTAAGGAGAATTTTAGATTAAGTGTAGCTGCTAAGGTTCTCTCTAATCGCCCAGTCAATGTTGAAGCATTCCGAAATGTTATGAAGTCAGTTTGGAGGGTGCATCATGAAACCAAGATTGAATTTGCAGAAACAGCAAAAATTTTAGGACAAAGAATTGGAGATATAGAAGAATTTGATTGGGATGGTACAGTTGATTGGATGGGTCCAGTGCTTAGAGTGCGGTTGGAGGCACCGTCTGGGACGAATGGGACTCTGATGCAAAGGGGGGGCGTGGATGACCAAAGGATAGATTTGGAAATGATGAAAGGGGTAGTTCAGGTGGACGTAAGGGAAGAAGTGTCATTTCTAAATTGGCGCTCTTTGGAAGTTCGTGGTAATTTTGAGAATTTTTCAAATTCAGAACTGAATGAAATTGGCTCTGATAGTCAAATTATTGTGCAACACGTTAAGGTTTTAGACACTGAGAAAGATATGGAAAGTAATGAAAAATCTATGGCTAGAAGAATCAATATGACAACCCCTTCTGAAGTTAAGAAAAGTCAAAATGAATCCATATCAGAGAAGAATTATGGCAAACAACTGTTGATATCAAACTCTTCTGAGTATTTTAAAGGAAAAGGTAAATTAGATGAAGATCTCAATGCCAATATTAAATCTTTCTCTTCTAGACATGAATCCCATGAAGATATGGAAGAAGATAGACGAATTTAG

Coding sequence (CDS)

ATGGAGGAGATATCTGAAAAATGGAGGAAGTTAAAATTGATAGATAAAGAAGAAACAAAGGTTGATCTTGATGAAATTAAATGTACTGTTTCTAAGGAGAATTTTAGATTAAGTGTAGCTGCTAAGGTTCTCTCTAATCGCCCAGTCAATGTTGAAGCATTCCGAAATGTTATGAAGTCAGTTTGGAGGGTGCATCATGAAACCAAGATTGAATTTGCAGAAACAGCAAAAATTTTAGGACAAAGAATTGGAGATATAGAAGAATTTGATTGGGATGGTACAGTTGATTGGATGGGTCCAGTGCTTAGAGTGCGGTTGGAGGCACCGTCTGGGACGAATGGGACTCTGATGCAAAGGGGGGGCGTGGATGACCAAAGGATAGATTTGGAAATGATGAAAGGGGTAGTTCAGGTGGACGTAAGGGAAGAAGTGTCATTTCTAAATTGGCGCTCTTTGGAAGTTCGTGGTAATTTTGAGAATTTTTCAAATTCAGAACTGAATGAAATTGGCTCTGATAGTCAAATTATTGTGCAACACGTTAAGGTTTTAGACACTGAGAAAGATATGGAAAGTAATGAAAAATCTATGGCTAGAAGAATCAATATGACAACCCCTTCTGAAGTTAAGAAAAGTCAAAATGAATCCATATCAGAGAAGAATTATGGCAAACAACTGTTGATATCAAACTCTTCTGAGTATTTTAAAGGAAAAGGTAAATTAGATGAAGATCTCAATGCCAATATTAAATCTTTCTCTTCTAGACATGAATCCCATGAAGATATGGAAGAAGATAGACGAATTTAG

Protein sequence

MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVDWMGPVLRVRLEAPSGTNGTLMQRGGVDDQRIDLEMMKGVVQVDVREEVSFLNWRSLEVRGNFENFSNSELNEIGSDSQIIVQHVKVLDTEKDMESNEKSMARRINMTTPSEVKKSQNESISEKNYGKQLLISNSSEYFKGKGKLDEDLNANIKSFSSRHESHEDMEEDRRI

Homology

[Close]

BLAST of Sed0021888 vs. NCBI nr
Match: XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-05
Identity = 41/173 (23.70%), Postives = 69/173 (39.88%), Query Frame = 0


Query: 1   MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKS 60
           M++I++ W    LI +EE  + +D  K  ++ +N +L    K+  ++ + VEAF +VMK 
Sbjct: 1   MDDITKLWENFTLIKEEEDTIVIDNQKPILTVDNIQLCAVGKLHPSKRITVEAFASVMKQ 60

Query: 61  VWRVHHETKIEFA----------------------------------------------- 108
           VW++H+ T+IE A                                               
Sbjct: 61  VWKIHNSTRIETAGLNIYVIAFKTMAEKIRVFSLGPWTFDKSLLILVPTTAANKPLDIDI 120

[Close]

BLAST of Sed0021888 vs. NCBI nr
Match: TXG49363.1 (hypothetical protein EZV62_025238 [Acer yangbiense])

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-05
Identity = 36/107 (33.64%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 2   EEISEKWRKLKLIDKEETKVDL-DEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKS 61
           EEI++    L L  KEE    + D +K +  K+   L +  KVLSN+ +N EAFR +M  
Sbjct: 43  EEIAKLCASLSLKSKEEQLWSVNDSLKISAGKK-LELCLVGKVLSNKHINREAFRTMMPK 102

Query: 62  VWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVDWMGPVLRVRLE 108
           +W    ++ ++  E  + +GQRIGD+++ D   T +  G  +R+++E
Sbjct: 103 IW----QSTLDVEEMGEFIGQRIGDLKDIDVRLTGECFGKYMRIKVE 144

[Close]

BLAST of Sed0021888 vs. NCBI nr
Match: TXG73186.1 (hypothetical protein EZV62_001765 [Acer yangbiense])

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-04
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 37  LSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVD 96
           LS+  KVL+NR +N EAF+ V++ +W+V     IE     + LG  IGD+EE D   + D
Sbjct: 27  LSLVGKVLANRLINREAFKRVLQKIWKVREGITIE-TRIGQFLGCMIGDVEEIDKGASGD 86

Query: 97  WMGPVLRVRL 107
             G  LRVR+
Sbjct: 87  CDGKFLRVRV 95

[Close]

BLAST of Sed0021888 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-04
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKS 60
          M+EI++ W   K  + E   V +D  K  ++ +N +L V AK+ +++ ++ EA R+VMKS
Sbjct: 1  MDEITDLWEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 60

Query: 61 VWRVHHETKIE 72
          VWRVH+ T+ E
Sbjct: 61 VWRVHNSTRFE 71

[Close]

BLAST of Sed0021888 vs. NCBI nr
Match: KAA0040131.1 (hypothetical protein E6C27_scaffold366G001060 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 3.8e-04
Identity = 37/126 (29.37%), Postives = 60/126 (47.62%), Query Frame = 0


Query: 8   WRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHE 67
           W++L L + E    + ++    +S++N  L    KVL  R  N+EAFR++MKSVW VH +
Sbjct: 2   WKRLSLNEGENVDFEAEDNNVLLSQQNIALCCVVKVLITRRDNIEAFRSLMKSVWCVHQD 61

Query: 68  TKIEFA-------------ETAKILGQRIGDIEEFDWD---GTVDWMGPVLRVRLEAPSG 118
           T+I  A             E  +I     G ++  ++D   G V  +  V+ +  +  SG
Sbjct: 62  TRIAVARKNMFLIHFKHTGEKTRITNTGHGLLQSSNYDGFQGQVTSIVKVVGINYDDQSG 121

[Close]

BLAST of Sed0021888 vs. ExPASy TrEMBL
Match: A0A5C7GX84 (zf-CCHC_4 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_025238 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-05
Identity = 36/107 (33.64%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 2   EEISEKWRKLKLIDKEETKVDL-DEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKS 61
           EEI++    L L  KEE    + D +K +  K+   L +  KVLSN+ +N EAFR +M  
Sbjct: 43  EEIAKLCASLSLKSKEEQLWSVNDSLKISAGKK-LELCLVGKVLSNKHINREAFRTMMPK 102

Query: 62  VWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVDWMGPVLRVRLE 108
           +W    ++ ++  E  + +GQRIGD+++ D   T +  G  +R+++E
Sbjct: 103 IW----QSTLDVEEMGEFIGQRIGDLKDIDVRLTGECFGKYMRIKVE 144

[Close]

BLAST of Sed0021888 vs. ExPASy TrEMBL
Match: A0A6J1DVS4 (uncharacterized protein LOC111023555 OS=Momordica charantia OX=3673 GN=LOC111023555 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-05
Identity = 41/173 (23.70%), Postives = 69/173 (39.88%), Query Frame = 0


Query: 1   MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKS 60
           M++I++ W    LI +EE  + +D  K  ++ +N +L    K+  ++ + VEAF +VMK 
Sbjct: 1   MDDITKLWENFTLIKEEEDTIVIDNQKPILTVDNIQLCAVGKLHPSKRITVEAFASVMKQ 60

Query: 61  VWRVHHETKIEFA----------------------------------------------- 108
           VW++H+ T+IE A                                               
Sbjct: 61  VWKIHNSTRIETAGLNIYVIAFKTMAEKIRVFSLGPWTFDKSLLILVPTTAANKPLDIDI 120

[Close]

BLAST of Sed0021888 vs. ExPASy TrEMBL
Match: A0A5C7IXL6 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001765 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 37  LSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVD 96
           LS+  KVL+NR +N EAF+ V++ +W+V     IE     + LG  IGD+EE D   + D
Sbjct: 27  LSLVGKVLANRLINREAFKRVLQKIWKVREGITIE-TRIGQFLGCMIGDVEEIDKGASGD 86

Query: 97  WMGPVLRVRL 107
             G  LRVR+
Sbjct: 87  CDGKFLRVRV 95

[Close]

BLAST of Sed0021888 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKS 60
          M+EI++ W   K  + E   V +D  K  ++ +N +L V AK+ +++ ++ EA R+VMKS
Sbjct: 1  MDEITDLWEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 60

Query: 61 VWRVHHETKIE 72
          VWRVH+ T+ E
Sbjct: 61 VWRVHNSTRFE 71

[Close]

BLAST of Sed0021888 vs. ExPASy TrEMBL
Match: A0A5A7TEP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G001060 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 37/126 (29.37%), Postives = 60/126 (47.62%), Query Frame = 0


Query: 8   WRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHE 67
           W++L L + E    + ++    +S++N  L    KVL  R  N+EAFR++MKSVW VH +
Sbjct: 2   WKRLSLNEGENVDFEAEDNNVLLSQQNIALCCVVKVLITRRDNIEAFRSLMKSVWCVHQD 61

Query: 68  TKIEFA-------------ETAKILGQRIGDIEEFDWD---GTVDWMGPVLRVRLEAPSG 118
           T+I  A             E  +I     G ++  ++D   G V  +  V+ +  +  SG
Sbjct: 62  TRIAVARKNMFLIHFKHTGEKTRITNTGHGLLQSSNYDGFQGQVTSIVKVVGINYDDQSG 121

The following BLAST results are available for this feature:

BLAST of Sed0021888 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156711.1	5.8e-05	23.70	uncharacterized protein LOC111023555 [Momordica charantia]	[more]
TXG49363.1	5.8e-05	33.64	hypothetical protein EZV62_025238 [Acer yangbiense]	[more]
TXG73186.1	2.2e-04	42.86	hypothetical protein EZV62_001765 [Acer yangbiense]	[more]
XP_022149484.1	2.2e-04	39.44	uncharacterized protein LOC111017902 [Momordica charantia]	[more]
KAA0040131.1	3.8e-04	29.37	hypothetical protein E6C27_scaffold366G001060 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0021888 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0021888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7GX84	2.8e-05	33.64	zf-CCHC_4 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02523...	[more]
A0A6J1DVS4	2.8e-05	23.70	uncharacterized protein LOC111023555 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5C7IXL6	1.1e-04	42.86	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00176...	[more]
A0A6J1D765	1.1e-04	39.44	uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5A7TEP2	1.8e-04	29.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0021888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021888.1	Sed0021888.1	mRNA