Sed0021843 (gene) Chayote v1

Overview
NameSed0021843
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG11: 34844287 .. 34846780 (-)
RNA-Seq ExpressionSed0021843
SyntenySed0021843
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCGTTCTGATTTTAAAAAGAAAGACAAAAAACAAAAACGCTCGTTCTTTTTCTGAAAACACGAACAACAAGAACACCGCCGACGCCGAGGAATTCGAACAACAAAAAAGGCTTCGACAAAGTTGTTCTTCGTGACCCACGCGGTTGTTCTGCTGAGGTATTGTTTAGGGATTTGAATGATTTGGGAGATTGATTTAGGATTTAGGATATGGGATTCGGAATTGTTTTCCTGTTGGGTTGAATTTGTTTGATGAAATGTGGAATTCATCTGATTTTAAGTTCAACCAAGTGTGTTTGTAGTATTCTTTCCGATTTTGACCCATGGAGTGGAGTGAGTTCTGGTTCATAGTTTAGTGGATTCTAGGATTGAATTGTTTGTTCTCTCGTCTTAAAACATTGTTGATCTGGTTTTTGTATTATGCATTCATTGCAGTTTTCAAATCTTGGTCCAGGATTTGGTGGAATCAGATGAATAACCTGATAATTGTCTGGGTTTTCAAATATTTCTTAATGGTTGATAAGGTGCTCAGTTTTTATCTAAATCAGTCCAAAGAAGGCAGAGTGATGGTATAACTATAGGGTATAGGGAATACAAGACAACTCATAACTGTTGTTTTCTATCACCAAGATTTATATAATGCTTTCTCTAATCTCATTTCTTAATCTAGCTGAAGCTGAACTCCCAACTCTACCCATCCATGTGCTTCTATCATTAAAATCATGCTTTCTATATTCTCATTTTTAATTTTGGGAATTGGTTGCAATACTTATCAAACTTTAAGGAGGGAGGTAATTGATCAAATCGAAAGTTTAAGAATGTGATTGTTACAAAGCTTATAGTTTAGGGGTTAGGGTGCTTTGTGCTATTTATTGTCTTCTTTTCAAGTTTGTTTAAAATCTCTACTTCTAGAGTTGTGTGGAGTAGTTTTCCCTGTCAATCCAAAATCCTGTGGAGAGAACCTCATTCATTGCTTTCACAGTTCTCGCGTTGCTTCCGATACTGAAAATCATTGCTTTGGAAATGTAGTTTGTTGTATTTTCCCCCACACTATAAATCGTTTAACCATGGCCTTGAAAATCAACTAGTTTTTAATTAGGCCAGAGGGTTCAAGCTCAAATTCAACCACGAGCTTAGTTTGAGAGAAAAATGGCATGGGAATTCGCATTGAGTGGAATGGTTGGAATGAGTGAAGAGAGAAGGCTGAATTTGGTATGGAAAAGAACCACAAGCTCGTGCTTTCATTCACCACAAAACAACGACACGATCAGATTGCTTCGAATCAAATTCTACTACTTGGAAGAGCCATGCGTATGGGTGGAGAGTCAAATTCAAGTTTTCTCTGTGCAAGTATCTTATGCTTTTATGCCTTCTCTAATTTGTTGCAGGAAATATTTGGAAGAGCATCCTACTATTAGCATCCTATCGTCGCAGGCCGAGATTGGACTGAGCTTCATTTTAATCATCTCTTTGCTCTCGTCAATTCTTAGTCCCCTTTGGCTCTTGTCAACTTCTTCCAGAACCATTTTCTTACTTTTTAATAGCCTTTTCTCTTCAATGAACTCTTCAAACTTGTGTTCTGCAGGTGGCAACGTAACTTCTTACATACATTCATGTACTGGCAGGTGTGTTTTTCTGTTATCATTTGCATATTTAGGCACACACAATATATCCAAAGAACATCATACGCATATTAGCCATCCAAAATTAAGGGGTATATTCATTGCAAGATATGTAGCACTTGAAATTCTGCCACTCCTTTTTTCCCTGATTACAAATCCCTTTTCCCTCTTTTCTCTTTAGTGGCAAGTTTGACAAATTAATGGATAAGGGTAACAAAAGTTTTTCTAAGATTTAGATCTAACAATTTAAATATTCAAACTTTATTTTTTTATATTTGCAAGTGTTTGAGTCAGCTTACGCACAACTCACTATTCTCACGGACCATATCTCCTGACCCTACAACATTTGAATGTCAAAAATATTATTTCTTAGATGGTTACAATGGATTGAACTCATAAGCTCTTTGATCCTCTCAACTCTTTTTGACCACTAACTTAGCTCAATGATGGTTTAAAACTTCTATTGACAACCATAGTTTTTTTTAAAACCATTAACTCAAGTCATGAGTAGGCTGATGTCCATCTTGAAGGGTGTTTCTCTTTTGTTTTCATATTCTAAGAATAGGGTTGGTGACTCACTTTTCTGTTGTGGGCTATTTCTAAACACAGCTGCTAAAGCTCATGTATCATGCTCCTGTCAATCATCGAACTCCGCTGATTTACCGTTATGCCCGATCTTAAATCTCCTTTTTCATTGGCGCAAAGGTGGTGGTTTAGGTAGAAGCTAATAATAGAGAAAGATGAAAGTATGATGCATCAAAATCTTTAGACTAATCCCAGTAGCTATTCTTTTGTCACTTTTTGAAGCTTAAAATTGGTATCACACTTGAAAAGCAACTTCTTAGGGGGTGTTTGGGATTTGGTGCTGGGGAG

mRNA sequence

CCTCGTTCTGATTTTAAAAAGAAAGACAAAAAACAAAAACGCTCGTTCTTTTTCTGAAAACACGAACAACAAGAACACCGCCGACGCCGAGGAATTCGAACAACAAAAAAGGCTTCGACAAAGTTGTTCTTCGTGACCCACGCGGTTGTTCTGCTGAGGTATTGTTTAGGGATTTGAATGATTTGGGAGATTGATTTAGGATTTAGGATATGGGATTCGGAATTGTTTTCCTGTTGGGTTGAATTTGTTTGATGAAATGTGGAATTCATCTGATTTTAAGTTCAACCAAGTGTGTTTGTAGTATTCTTTCCGATTTTGACCCATGGAGTGGAGTGAGTTCTGGTTCATAGTTTAGTGGATTCTAGGATTGAATTGTTTGTTCTCTCGTCTTAAAACATTGTTGATCTGGTTTTTGTATTATGCATTCATTGCAGTTTTCAAATCTTGGTCCAGGATTTGGTGGAATCAGATGAATAACCTGATAATTGTCTGGGTTTTCAAATATTTCTTAATGGTTGATAAGGTGCTCAGTTTTTATCTAAATCAGTCCAAAGAAGGCAGAGTGATGGTATAACTATAGGGTATAGGGAATACAAGACAACTCATAACTGTTGTTTTCTATCACCAAGATTTATATAATGCTTTCTCTAATCTCATTTCTTAATCTAGCTGAAGCTGAACTCCCAACTCTACCCATCCATGTGCTTCTATCATTAAAATCATGCTTTCTATATTCTCATTTTTAATTTTGGGAATTGGTTGCAATACTTATCAAACTTTAAGGAGGGAGGTAATTGATCAAATCGAAAGTTTAAGAATGTGATTGTTACAAAGCTTATAGTTTAGGGGTTAGGGTGCTTTGTGCTATTTATTGTCTTCTTTTCAAGTTTGTTTAAAATCTCTACTTCTAGAGTTGTGTGGAGTAGTTTTCCCTGTCAATCCAAAATCCTGTGGAGAGAACCTCATTCATTGCTTTCACAGTTCTCGCGTTGCTTCCGATACTGAAAATCATTGCTTTGGAAATGTAGTTTGTTGTATTTTCCCCCACACTATAAATCGTTTAACCATGGCCTTGAAAATCAACTAGTTTTTAATTAGGCCAGAGGGTTCAAGCTCAAATTCAACCACGAGCTTAGTTTGAGAGAAAAATGGCATGGGAATTCGCATTGAGTGGAATGGTTGGAATGAGTGAAGAGAGAAGGCTGAATTTGGTATGGAAAAGAACCACAAGCTCGTGCTTTCATTCACCACAAAACAACGACACGATCAGATTGCTTCGAATCAAATTCTACTACTTGGAAGAGCCATGCGTATGGGTGGAGAGTCAAATTCAAGTTTTCTCTGTGCAAGTATCTTATGCTTTTATGCCTTCTCTAATTTGTTGCAGGAAATATTTGGAAGAGCATCCTACTATTAGCATCCTATCGTCGCAGGCCGAGATTGGACTGAGCTTCATTTTAATCATCTCTTTGCTCTCGTCAATTCTTAGTCCCCTTTGGCTCTTGTCAACTTCTTCCAGAACCATTTTCTTACTTTTTAATAGCCTTTTCTCTTCAATGAACTCTTCAAACTTGTGTTCTGCAGGTGGCAACGTAACTTCTTACATACATTCATGTACTGGCAGCTGCTAAAGCTCATGTATCATGCTCCTGTCAATCATCGAACTCCGCTGATTTACCGTTATGCCCGATCTTAAATCTCCTTTTTCATTGGCGCAAAGGTGGTGGTTTAGGTAGAAGCTAATAATAGAGAAAGATGAAAGTATGATGCATCAAAATCTTTAGACTAATCCCAGTAGCTATTCTTTTGTCACTTTTTGAAGCTTAAAATTGGTATCACACTTGAAAAGCAACTTCTTAGGGGGTGTTTGGGATTTGGTGCTGGGGAG

Coding sequence (CDS)

ATGGCATGGGAATTCGCATTGAGTGGAATGGTTGGAATGAGTGAAGAGAGAAGGCTGAATTTGGTATGGAAAAGAACCACAAGCTCGTGCTTTCATTCACCACAAAACAACGACACGATCAGATTGCTTCGAATCAAATTCTACTACTTGGAAGAGCCATGCGTATGGGTGGAGAGTCAAATTCAAGTTTTCTCTGTGCAAGTATCTTATGCTTTTATGCCTTCTCTAATTTGTTGCAGGAAATATTTGGAAGAGCATCCTACTATTAGCATCCTATCGTCGCAGGCCGAGATTGGACTGAGCTTCATTTTAATCATCTCTTTGCTCTCGTCAATTCTTAGTCCCCTTTGGCTCTTGTCAACTTCTTCCAGAACCATTTTCTTACTTTTTAATAGCCTTTTCTCTTCAATGAACTCTTCAAACTTGTGTTCTGCAGGTGGCAACGTAACTTCTTACATACATTCATGTACTGGCAGCTGCTAA

Protein sequence

MAWEFALSGMVGMSEERRLNLVWKRTTSSCFHSPQNNDTIRLLRIKFYYLEEPCVWVESQIQVFSVQVSYAFMPSLICCRKYLEEHPTISILSSQAEIGLSFILIISLLSSILSPLWLLSTSSRTIFLLFNSLFSSMNSSNLCSAGGNVTSYIHSCTGSC
Homology
[Close]
BLAST of Sed0021843 vs. TAIR 10
Match: AT3G02420.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 7.0e-04
Identity = 27/62 (43.55%), Postives = 32/62 (51.61%), Query Frame = 0 

Query: 49  YLEEPCVWVESQIQVFSVQVSYAFMPSLICCRKYLEEHPTISILSSQAEIGLSFILIISL 108
           YLE+PCVWVES                            T++ILSSQAEI + F+LIISL
Sbjct: 249 YLEDPCVWVESNT-------------------------TTLNILSSQAEIAIGFLLIISL 285

Query: 109 LS 111
           LS
Sbjct: 309 LS 285

The following BLAST results are available for this feature:
BLAST of Sed0021843 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0021843 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0021843 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0021843 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G02420.17.0e-0443.55unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0021843.1Sed0021843.1mRNA