Sed0021841 (gene) Chayote v1

Overview
NameSed0021841
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG09: 2049922 .. 2050244 (+)
RNA-Seq ExpressionSed0021841
SyntenySed0021841
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACCATCACAAAAACAAATTCCAAAAAAAAAAAAACTCTCCTTTTGCAAATTATGGGTTTGAGAGACAGAGAAATTAGGGCTCAAGCAGATTTGGTGAAGATTGGGAGAGAAGGATTTGACCTAATTGACAAATTCTACGGTCGGTCACCGGCGGGAAGACGGGCACCAACACCGGCGAGGCAGGCGCTGCCGCAACCGCCGCGTACGGCGGAGCAAACTCCTTCAATAAGGAAGAAGAATGAAATTCCGATGGCGCCGGAGAACTCCGATCAGGCGGCGAAAACACGTGGTGGATTCGTGGTTACAACTTGGCGTATATAG

mRNA sequence

CAACCATCACAAAAACAAATTCCAAAAAAAAAAAAACTCTCCTTTTGCAAATTATGGGTTTGAGAGACAGAGAAATTAGGGCTCAAGCAGATTTGGTGAAGATTGGGAGAGAAGGATTTGACCTAATTGACAAATTCTACGGTCGGTCACCGGCGGGAAGACGGGCACCAACACCGGCGAGGCAGGCGCTGCCGCAACCGCCGCGTACGGCGGAGCAAACTCCTTCAATAAGGAAGAAGAATGAAATTCCGATGGCGCCGGAGAACTCCGATCAGGCGGCGAAAACACGTGGTGGATTCGTGGTTACAACTTGGCGTATATAG

Coding sequence (CDS)

ATGGGTTTGAGAGACAGAGAAATTAGGGCTCAAGCAGATTTGGTGAAGATTGGGAGAGAAGGATTTGACCTAATTGACAAATTCTACGGTCGGTCACCGGCGGGAAGACGGGCACCAACACCGGCGAGGCAGGCGCTGCCGCAACCGCCGCGTACGGCGGAGCAAACTCCTTCAATAAGGAAGAAGAATGAAATTCCGATGGCGCCGGAGAACTCCGATCAGGCGGCGAAAACACGTGGTGGATTCGTGGTTACAACTTGGCGTATATAG

Protein sequence

MGLRDREIRAQADLVKIGREGFDLIDKFYGRSPAGRRAPTPARQALPQPPRTAEQTPSIRKKNEIPMAPENSDQAAKTRGGFVVTTWRI
Homology
BLAST of Sed0021841 vs. NCBI nr
Match: KGN47422.1 (hypothetical protein Csa_021740 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-14
Identity = 53/90 (58.89%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 3  LRDREIR-AQADLVKIGREGFDLIDKFYGRSP---AGRRAPTPARQALPQPPRTAEQTPS 62
          LR+REIR ++ DL KIGREGF +ID+++GR+    A R A   AR ALPQPPR AEQ P 
Sbjct: 4  LREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPR 63

Query: 63 IRKKNEIPMAPENSDQAAKTRGGFVVTTWR 89
          IRK  E P+A   SDQ AK  GG V+TTWR
Sbjct: 64 IRK--EKPVAAVTSDQVAKHGGGTVITTWR 91

BLAST of Sed0021841 vs. NCBI nr
Match: KAG6575081.1 (hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-12
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 11 QADLVKIGREGFDLIDKFYGRSPAGRRAP--TPARQALPQPPRTAEQTPSIRKKNEIPMA 70
          + DL KIGREGFDLID+++GR+PA RRA     AR ALPQ P  AEQ P  RKK E    
Sbjct: 4  RGDLAKIGREGFDLIDEYFGRAPATRRAAAVAAARPALPQAPCKAEQPP--RKKREKMPV 63

Query: 71 PENSDQAAKTRGGFVVTTWR 89
            N +Q AK RGG V+TTWR
Sbjct: 64 AVNCNQVAKARGGIVITTWR 81

BLAST of Sed0021841 vs. NCBI nr
Match: KAG6575082.1 (hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 3.7e-12
Identity = 46/78 (58.97%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 11 QADLVKIGREGFDLIDKFYGRSPAGRRAPTPARQALPQPPRTAEQTPSIRKKNEIPMAPE 70
          +ADL KIGREGF+LID+++GR PA RR P  AR ALPQ P  AEQ P  RK  E    P 
Sbjct: 4  RADLAKIGREGFELIDEYFGRVPATRR-PAVARPALPQAPCKAEQPP--RKMREKLPVPV 63

Query: 71 NSDQAAKTRGGFVVTTWR 89
          N +Q A+ RGG V+TTWR
Sbjct: 64 NCNQVARARGGVVITTWR 78

BLAST of Sed0021841 vs. NCBI nr
Match: KGN47421.1 (hypothetical protein Csa_021737 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 52/94 (55.32%), Postives = 58/94 (61.70%), Query Frame = 0

Query: 1  MGLRDRE-IRAQADLVKIGREGFDLIDKFYGR--SPAGRR--APTPARQALPQPPR-TAE 60
          MG R+RE I   A+L +IG EGF LIDKF+GR  +  GRR  A T  R A  QPPR  AE
Sbjct: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE 60

Query: 61 QTPSIRKKNEIPMAPENSDQAAKTRGGFVVTTWR 89
          Q PS  K  E   A   SD  AKTRGG V+TTWR
Sbjct: 61 QPPS--KTKEKQGAVVTSDHLAKTRGGIVITTWR 92

BLAST of Sed0021841 vs. NCBI nr
Match: XP_023548315.1 (multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-05
Identity = 37/66 (56.06%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 11 QADLVKIGREGFDLIDKFYGRSPAGRRAPTPA--RQALPQPPRTAEQTPSIRKKNEIPMA 70
          +ADL KIGREGF+LID+++GR PA RRA   A  R ALPQ P  AEQ P  RK  E    
Sbjct: 4  RADLAKIGREGFELIDEYFGRVPATRRAAAAAAGRPALPQAPCKAEQPP--RKMREKLPV 63

Query: 71 PENSDQ 75
          P N +Q
Sbjct: 64 PVNCNQ 67

BLAST of Sed0021841 vs. ExPASy TrEMBL
Match: A0A0A0KG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 53/90 (58.89%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 3  LRDREIR-AQADLVKIGREGFDLIDKFYGRSP---AGRRAPTPARQALPQPPRTAEQTPS 62
          LR+REIR ++ DL KIGREGF +ID+++GR+    A R A   AR ALPQPPR AEQ P 
Sbjct: 4  LREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPR 63

Query: 63 IRKKNEIPMAPENSDQAAKTRGGFVVTTWR 89
          IRK  E P+A   SDQ AK  GG V+TTWR
Sbjct: 64 IRK--EKPVAAVTSDQVAKHGGGTVITTWR 91

BLAST of Sed0021841 vs. ExPASy TrEMBL
Match: A0A0A0KI19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.3e-10
Identity = 52/94 (55.32%), Postives = 58/94 (61.70%), Query Frame = 0

Query: 1  MGLRDRE-IRAQADLVKIGREGFDLIDKFYGR--SPAGRR--APTPARQALPQPPR-TAE 60
          MG R+RE I   A+L +IG EGF LIDKF+GR  +  GRR  A T  R A  QPPR  AE
Sbjct: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE 60

Query: 61 QTPSIRKKNEIPMAPENSDQAAKTRGGFVVTTWR 89
          Q PS  K  E   A   SD  AKTRGG V+TTWR
Sbjct: 61 QPPS--KTKEKQGAVVTSDHLAKTRGGIVITTWR 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN47422.12.3e-1458.89hypothetical protein Csa_021740 [Cucumis sativus][more]
KAG6575081.12.8e-1258.75hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575082.13.7e-1258.97hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN47421.11.3e-0955.32hypothetical protein Csa_021737 [Cucumis sativus][more]
XP_023548315.13.3e-0556.06multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. p... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KG951.1e-1458.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1[more]
A0A0A0KI196.3e-1055.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0021841.1Sed0021841.1mRNA