Sed0021795 (gene) Chayote v1

Overview


Name	Sed0021795
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-repair protein XRCC1
Location	LG09: 38964678 .. 38971318 (-)
RNA-Seq Expression	Sed0021795
Synteny	Sed0021795

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCACCGCAAAATCGAATCTAGGGTTTGTTTCTAATTTCAATCATCATTTTCCTTCAATTTCTGCCGATTTCTTGCTGGTTCTACTTGATCGATAAACGCTGTTAGGTTAGTGATCAAATTCACTCAGGCTTATCGATTGCATGTTAAACCCAATCTGCATTTAGTGCTAAATTTGCGTTTTGATCTCATTTTTTAGCTGAATGTTCATATTTTCATGTCGGTTGGCTGCCAAATGTTGTGTTAAGTTTGTATATCTTGCGACATAAGCCGTGTTTGATAACCATTTAGTTTTTTGTTTTTAAATTTAAATCTGCAACTACTACTCCAACCGTTCAACGTATAGTTTTTATTACTTTGATATCTATGTTTTATTTGTGTTTTTAAAAATCAAACCAAAATTTGAAAGCTAAGATCCCGTTTGAAAACCATTTGGTTTTTTATTTTTGGTTTTTTAAATTTAAGTCTATTATCACTCAAATTCCTACAATGTGTTCCACCCTTCCTACAATTTATCCATCTTTTCTTTAAGAAAGTAGATGAATACTAACCAACTTTTAAAAACAAAAACAAACTTTTGGAAGCTACTTTTTTTTTGTTTCCAAATTTTGGTTTGGAAACTACAAATATAGGTGAGAGGTAGATAACCAAGAAAGAAAAAATCTATGGTAAGATAGTTGTTGTAGGCTTAAATTTCAAAAACCAAATGGTTATCAAACGGGGTCTAAAAAACATAGCTTCCAATACTGGAATTTAGTTAGGATTCACGAACTTATTTAAGAGATGATGAAACCATATGTAGAAATCTTGGCTAGTGTAAAACTTAAATTTCAAAAACTAAAACTGAAAACCAAATGGTTATCAAACGGAGCCTTAGTTTTTTTTTAAACTTTGAACCAGTACTGGGAATTTATTGGACACTGATGAATTCTTTAAGTTTTTATTAGTTTAAGTGCATTGTCCTGCCTTCTGTCCAAAATTTGAAGTTGTTTCTGAATTTCTAGATGGTGGCGATTTTATGTGCAGGCTCTTACTCGCACCTATTTGAGTTTTCGTTTAATGTTGCTTGGAGAACAGATGTCTTTCTGAGGATTCCTACAAATCTTCTTTGTATTTGAGATGAACCGACAAATATTAGCCTCGTAATAGAAATATAATCATTTTAGTGGGACGGATCGATATGTCGAATTCTAAGGCTAACGAGGGTGGTGGCAATGCTAAGCGAAGTCTTCCTTCATGGATGAGTGGGAAGGACGATGAGAGTACTTCTCGAAGCAAGAAACCGAGCAGTTCTGATTCTGGTGGAAATGAAGTGATGGCCGAAGCTGAAGCGCCGAAGCATGGGAAAGGAAATGATGAAGGCTCAGTGAGCAGTTCATTACACCGAGATTTTTCCAGACTTCTGGTTCCCATTGTTTCATTTCAATCCTTTCGTTATATATGGATGTGTCATTTTTACATATTTTGATAAAATACCAATGGAAAATGCAGGAAGGAGTGGTATTCGCGTTATCAGGTTTTGTTAATCCCGAGCGCAGCATTCTGCGGTCCCAGGCATTAGAAATGGGAGCTCAGTATAAGCCTGATTGGAACTCAGATTGCACTTTGTTGATCTGTGCTTTCCCAAATACTCCTAAATTTCGACAAGTTGAATCAGACTGTGGAACAATAGTATCAAAGGTTTATCTTATTTTTAACAAAAACCTGAACATTATTTTTTTTTCTAAGAGATTTATGCTGGTTTTTGTGCGTAGGAAATCTCGAGTCAGTAACTCACAAATATTCTGATGTGATGTGACTAAATAGAACAACAATTTATAGTAATATGTTTGCTGTCAAGTATTACGTGTTGTTGATGATATATATTTAAAAAATCTGGTAAGGAACAGTGTTTTAAAAGGAGTGCTTGGGCTCAAGTCCCACCTCTAGCGCCTCACTTGTCCCAGGCAAGGTGTGTGTAATAAGGCGCGCGCCTTGTGGAATTTTGTATTTTCTTTGCACTTTTTGTGTTTTAGATCCTCGTACTAGGCCATTCGAAGCGCGTGAAGGTTGATAGTTGAATATTATATATTTTTATTGGTTGATATAATTAAATTTACTCCAATCCATCCGCTTAGGCTTTTGCATTGATTGGTGGTTTAACATAATTCAACATGGTATCAGAGCAGGAGGTCATGAGTTCGAATCCCTGCCAAGTCGTTTCCTCCCTAATTAAAATTAAATTCCACTTGTAGAGCATTTTCTCAAATTTCAAAGCCCACAAGTGAGGGGGAGTATTGGTTTATATAATTAAATTTATCCGAATCCATCAGCTTAGGCTTTTGGATTGATTGGTGGTTTAATATAATTCAACATTTTTTATATATTATTCTTGGTTAAAACTTCATTTATGTCCATGAAAAGTGTTTTTATTGTGTATACACACATATATATAAAAAAAAATTGTTTTTTTTATATAGTGCGCCTTAAGTAAAAAAGCCCTCACCTTTTGGTGCTCCTTGTGCCTCAGGCTCCAGAAGGCCATTGCGCCTTAGTACGCCTTGCACTTTTTAAAACACTAGTAAGGAATATAAAACAATCTTTCCTCTCTATTTTAGTATTTTCTAAATATTCCGTGGTTATTTTGAAATGTTCTCAGCCTTGCTTATATCGTGGGTTGTTTTTCGAATACATTAAAACAAGTCATGGGTTGTTTTTCTTTGGTGATGATAACAGATAAGTTTGATTTTTCTTTAAGCGTATCATATCATATTGATCTAATTAGGCAGTGTGTTTCCCTTTCATGCACATTAAATATATGCATAGATGTTTTTAGAAATTCACTTTAAAATCTGACTGGACCAGTATCTGGTTGTCAATGGCAGCAGGATTCTAAATTGTAGATTTAGGTTCTAAGTATTCCCATTATGTATACTTGTTAGGAGTGGATATCAAACTGTTATGCACAGAAGAAGCTTGTTGACATTGAAAGCTACCTTCTCTTTCCTGGAAAACCCTGGCGAAGAAGCAACCTATCACATGAAGCCAGCCAAGGTAATCCAGAGTAGAAATATTTACGTTTGTATGATTGCGAATTCTTTGCAATTCTAATAGTTGTCACCGCCATAGCCTCACTACTTTACTTGCACGATAGCTGTGTTTAGTGTAATTAATTTCGATAAGACTTTATGTAGCTATTTCATACATCAATAATAAGTTTTGTTTTCTATCAACAAGAAAAAGATAACGATGACGAGTTGTTAAACAAATGTATGCCATTGAGGCACTTGCATATAATGGAGTATTGAATCATGGATAGTATTTTTATATGCTATGGCTATGTAATTTTGGTTGATGTCATCTTGTGCCTACCATTTTCTTGTTTTCCTGATTTTGCTATTTTTTAATGTTGTTCTTTCACTTTGTACCCGATGCTGGAGAATTATTTCTGAAATACCCATCATTCATTTTCATCCCTGGGATGTATGATTGCAGCTATTCCATCGCCATCCAAGAGACCTCAGAAACCAGTTGAAACAACTTCGCATTTAAAACCGACTGAGCGGGAGATAACTCAGGTATATAGTCTGATTCTTGTGAAATTCGATGTCACTATAACATCTTTGTTCTTCCATCCTGATTTGTATGATTTATATGGGAAGTAATAAAGCAAAGCTAGATCTTTTCTGGGATGTAGGCTATGTTAGGCGACAACTTCTATATTCATATATGTATGAATGCTGATATACGGATATTTATATCTTTAACATCTTCTATATGCAGAGTAGAGAGATTAATTCTTCAAGAGAGTGCTTTTCTCCTTTGAAATTGAAGAAGTGGGCTATTGATGATTACCATAAAACACTTTCCTGGCTAGAGAGTCAGGAAGAAAAGGTTAGAACAAAAGTGATTACATATTTATTTTTGGCAGAATATAGTTTTTACTTCATATACCCAGTGAACCCATGCAAGTTAAAAGGAGACCTGGCATCTTCTCTCTAAATAGCCTAGTTTGGTTGAGAATTTACCATCAGCAACACATTCTACCTCTTATATTATATTTGCAGCAGAATTTTAAAAATAATTCATTTATAGCACATTCATTTCTATCACTCAACTAGTGATAGAACTTAATTTGGATTTCTATCACTAATAGAAAATTCAACTAGTGATAAAATTAATCTATCATTGATTGAATTCTAATTAGTGATAGAATTCAATTTGAATTTTCTGCTACAAATAAATTAATTTTGATTTTGTGCTATAGATGAAAATACTTCGGCTTTTTTTGTTATACATGCAAAATCCCCTAGTTGGTTTTTGAAAGGCGTGGACCGCGTGGTACCCTTCATTTCTTGCACAATTGAAAGTGTGGATAAATGGTGAAATTATATTGATTTTATTTTGATTTAAGTTTTCATTTTAAACCTTTTGTAGCCAGATCCAAGTGAGATAAAGAAAATAGCAGCAGAAGGAATTTTAACTTGTTTACAAGATGCTATAGATTCTCTTCGTCAAAATCAGGTAGAAAATGTTTCCTACATGTTATTATGAAGCCATGATCAATTTATTTCTTCTCGACGTGTAAAAAATAGTAATGAATAACAGAATAAGTTGCGGATGTGTTTGTTACATTTCAACCTTCATATTGGTGTTAATTATTAGCAAGTTAACTTCCTTTGTTGTTAGTCACGTTTTTTCGGCTAGTTTTAAATGCAGTATTTAACATTTTTATTTTAAGATGGGGAACTTTTTCAGTTTTTTTTTTTGGGAAACAGAAAAATTGGAGCCTCGCTCCAATATACCGGGGTAACCACGTCCATTCCTAGGCCAGGCACTGGAAACTTTGTCATAGTGACCCGTCACTTCTTTTCTAAGTTTGTTGTTTCCTGTGAAGCAAACAAAAATTTGTTAGTCGTTCTCGTGTAAGTTTTTCTTTTGTTTTTGTTTTTTTTTACTGGCCCCTTCCATTATTTAATCTGGCAATTTTGTGTAAGATTATGTAGTTTTTAGCTCAAGCCTCGCATCCCCTATTTATTAAATGTTCTCTCTAGTGTGAGAAAAAAACAAATGATACTACGGACCAATCAGCTATATTGTGAATAAGGTGCATTTTTTTTTTTGAAACAAGAGTAACCACGTCCATCCCTAGGCCAGGCACCGGGAGACATCGAAGGAGTAATATCACAGCTGAGTCTCGAACTTGAGTTCTTGAGGGGAACATACTCTCAAAACCCAAGTCTTCAACCACTGTGTCACCCCTTGGGGGCTGCATTTGAAACATTTACATCGTATCTCATTGCAACTTAGCTTAAGTGCAATTGATTTTTTTATTGGTGCTGGTAGGATTGGGTGCTTTCATGGTCTTTATTTGAATATGTGGATGAGGAGTTAGTTTGCATAGTTAGGAAATTGAGGTTTTTGTAATAGCTCGTTTGAATGTAGATTTTTATGGAGAAGTTGCAATCAAAAACTCGTTTAGATGTATTTTTTTGTAGAGGAGTTAGAGACAGTAGCTTGTTTGGATGTGGATGTGAAATAAGGAGTTATTTTGAGTCGTTAAAAATGAATGATTAGAAATGAGTGATTAAAAATGAGATAATTTGAATAGTTAGAGATGAATGATTAGAAAGGAATTATTAAAAATGAAGAATTATTTTGAGTAGTTAGAAATAAATGATTAGAAATGAGTGGTTAAAACGAGCAGTTATTTTGGGTAGTTATCATAGTTTGTTTGGATGTGGTTTTTTTAGGAGTAGTTAGTAAATGCTCAATGTAAATCCTTAAAAATTTGACAAACAAACACCCTCATTTAGCTCGACCAACGCCTTTCTCGCATTCTGCCTGCATACATCATTGTTCAGTTTATTTTAGCTCTTAACCCATACTTAATTTGGATGCAGGACATAAGTCAGATGACTGAAGAATGGAAATTCGTTCCTCAGGTGGTGGAAGAGCTGGCAAAGCTTAGCAATACGAAAAAGTCGATATCGAAGGATGAACTTCGCAGGCATGCTGCAGATTCTAAAAGGATTTATGAGGTAGAACTTAATTCTCTACTTAACAATTCTCCAGAAAGAAAGAAAAAACCAAATATCAGTAAAGAACCAAAGAATGGTCATAAGGCAAAGAAAGAAATGTCTATTGCACATGATTATGATAGTGATGACACAATTGAGATGACTGAGGAGGAGATAGACATTGCATTCCACAAGGTAGCTAGTAACAAGAAAGCTTAGCTGAGCTCCGATTTTCGGGTTTCCAAAAAAAAAAAAGAAGGAGAAGAAGAAAGCTTAGCTGAGGTCCTCTGGCTCAACTTTTATAGAGGGTCAAACTCTTCTGCTGTATGTATTGCCATTATCTGGTTTTTTTTTAATCTCAAAAGTGAAAATTCCAATTTGTTGATTTTATATTTTTGTGCTTCTCAAGCTTGCAATGATCATTTTGTTTCTCTGAATGGTTGTACATCTGCTCCTTTTTTTCTTTAGTACAATAGGGGGTTGGGGTTTCGAACCATAAAC

mRNA sequence

CTCACCGCAAAATCGAATCTAGGATGTCTTTCTGAGGATTCCTACAAATCTTCTTTGTATTTGAGATGAACCGACAAATATTAGCCTCGTAATAGAAATATAATCATTTTAGTGGGACGGATCGATATGTCGAATTCTAAGGCTAACGAGGGTGGTGGCAATGCTAAGCGAAGTCTTCCTTCATGGATGAGTGGGAAGGACGATGAGAGTACTTCTCGAAGCAAGAAACCGAGCAGTTCTGATTCTGGTGGAAATGAAGTGATGGCCGAAGCTGAAGCGCCGAAGCATGGGAAAGGAAATGATGAAGGCTCAGTGAGCAGTTCATTACACCGAGATTTTTCCAGACTTCTGGAAGGAGTGGTATTCGCGTTATCAGGTTTTGTTAATCCCGAGCGCAGCATTCTGCGGTCCCAGGCATTAGAAATGGGAGCTCAGTATAAGCCTGATTGGAACTCAGATTGCACTTTGTTGATCTGTGCTTTCCCAAATACTCCTAAATTTCGACAAGTTGAATCAGACTGTGGAACAATAGTATCAAAGGAGTGGATATCAAACTGTTATGCACAGAAGAAGCTTGTTGACATTGAAAGCTACCTTCTCTTTCCTGGAAAACCCTGGCGAAGAAGCAACCTATCACATGAAGCCAGCCAAGCTATTCCATCGCCATCCAAGAGACCTCAGAAACCAGTTGAAACAACTTCGCATTTAAAACCGACTGAGCGGGAGATAACTCAGAGTAGAGAGATTAATTCTTCAAGAGAGTGCTTTTCTCCTTTGAAATTGAAGAAGTGGGCTATTGATGATTACCATAAAACACTTTCCTGGCTAGAGAGTCAGGAAGAAAAGCCAGATCCAAGTGAGATAAAGAAAATAGCAGCAGAAGGAATTTTAACTTGTTTACAAGATGCTATAGATTCTCTTCGTCAAAATCAGGACATAAGTCAGATGACTGAAGAATGGAAATTCGTTCCTCAGGTGGTGGAAGAGCTGGCAAAGCTTAGCAATACGAAAAAGTCGATATCGAAGGATGAACTTCGCAGGCATGCTGCAGATTCTAAAAGGATTTATGAGGTAGAACTTAATTCTCTACTTAACAATTCTCCAGAAAGAAAGAAAAAACCAAATATCAGTAAAGAACCAAAGAATGGTCATAAGGCAAAGAAAGAAATGTCTATTGCACATGATTATGATAGTGATGACACAATTGAGATGACTGAGGAGGAGATAGACATTGCATTCCACAAGGTAGCTAGTAACAAGAAAGCTTAGCTGAGCTCCGATTTTCGGGTTTCCAAAAAAAAAAAAGAAGGAGAAGAAGAAAGCTTAGCTGAGGTCCTCTGGCTCAACTTTTATAGAGGGTCAAACTCTTCTGCTGTATGTATTGCCATTATCTGGTTTTTTTTTAATCTCAAAAGTGAAAATTCCAATTTGTTGATTTTATATTTTTGTGCTTCTCAAGCTTGCAATGATCATTTTGTTTCTCTGAATGGTTGTACATCTGCTCCTTTTTTTCTTTAGTACAATAGGGGGTTGGGGTTTCGAACCATAAAC

Coding sequence (CDS)

ATGTCGAATTCTAAGGCTAACGAGGGTGGTGGCAATGCTAAGCGAAGTCTTCCTTCATGGATGAGTGGGAAGGACGATGAGAGTACTTCTCGAAGCAAGAAACCGAGCAGTTCTGATTCTGGTGGAAATGAAGTGATGGCCGAAGCTGAAGCGCCGAAGCATGGGAAAGGAAATGATGAAGGCTCAGTGAGCAGTTCATTACACCGAGATTTTTCCAGACTTCTGGAAGGAGTGGTATTCGCGTTATCAGGTTTTGTTAATCCCGAGCGCAGCATTCTGCGGTCCCAGGCATTAGAAATGGGAGCTCAGTATAAGCCTGATTGGAACTCAGATTGCACTTTGTTGATCTGTGCTTTCCCAAATACTCCTAAATTTCGACAAGTTGAATCAGACTGTGGAACAATAGTATCAAAGGAGTGGATATCAAACTGTTATGCACAGAAGAAGCTTGTTGACATTGAAAGCTACCTTCTCTTTCCTGGAAAACCCTGGCGAAGAAGCAACCTATCACATGAAGCCAGCCAAGCTATTCCATCGCCATCCAAGAGACCTCAGAAACCAGTTGAAACAACTTCGCATTTAAAACCGACTGAGCGGGAGATAACTCAGAGTAGAGAGATTAATTCTTCAAGAGAGTGCTTTTCTCCTTTGAAATTGAAGAAGTGGGCTATTGATGATTACCATAAAACACTTTCCTGGCTAGAGAGTCAGGAAGAAAAGCCAGATCCAAGTGAGATAAAGAAAATAGCAGCAGAAGGAATTTTAACTTGTTTACAAGATGCTATAGATTCTCTTCGTCAAAATCAGGACATAAGTCAGATGACTGAAGAATGGAAATTCGTTCCTCAGGTGGTGGAAGAGCTGGCAAAGCTTAGCAATACGAAAAAGTCGATATCGAAGGATGAACTTCGCAGGCATGCTGCAGATTCTAAAAGGATTTATGAGGTAGAACTTAATTCTCTACTTAACAATTCTCCAGAAAGAAAGAAAAAACCAAATATCAGTAAAGAACCAAAGAATGGTCATAAGGCAAAGAAAGAAATGTCTATTGCACATGATTATGATAGTGATGACACAATTGAGATGACTGAGGAGGAGATAGACATTGCATTCCACAAGGTAGCTAGTAACAAGAAAGCTTAG

Protein sequence

MSNSKANEGGGNAKRSLPSWMSGKDDESTSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDEGSVSSSLHRDFSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEASQAIPSPSKRPQKPVETTSHLKPTEREITQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEKPDPSEIKKIAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKKSISKDELRRHAADSKRIYEVELNSLLNNSPERKKKPNISKEPKNGHKAKKEMSIAHDYDSDDTIEMTEEEIDIAFHKVASNKKA

Homology

[Close]

BLAST of Sed0021795 vs. NCBI nr
Match: XP_038899733.1 (DNA-repair protein XRCC1 [Benincasa hispida] >XP_038899734.1 DNA-repair protein XRCC1 [Benincasa hispida] >XP_038899736.1 DNA-repair protein XRCC1 [Benincasa hispida])

HSP 1 Score: 605.9 bits (1561), Expect = 2.4e-169
Identity = 315/378 (83.33%), Postives = 338/378 (89.42%), Query Frame = 0


Query: 1   MSNSKANEGGGNAKRSLPSWMSGKDDESTSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDE 60
           MS+SK NEGGGNAKRSLPSWMSGKDD S+SR KKP+SS S GN+V  EA+ PK  KGN E
Sbjct: 1   MSDSKTNEGGGNAKRSLPSWMSGKDDGSSSRGKKPNSSGSVGNDV--EAKEPKQEKGNGE 60

Query: 61  GSVSSSLHRDFSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
           G VSSSLHRDFSRLLEGVVF LSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEASQAIPSP 180
           NTPKFRQVESDCGTIVSKEWIS CYAQK+LVDIESYLL+ GKPWRRSNL+ EA+QA+PS 
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSNLAREANQAVPSS 180

Query: 181 SKRPQKPVETTSHLKPTEREITQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEK 240
           SK+PQKPVE  S LKP E+EI QSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEK
Sbjct: 181 SKKPQKPVEKASRLKPHEQEIAQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKKSISK 300
           PDP EIKKIAAEGILTCLQDAIDSL QNQDI+QMTEEWKFVPQVVEELAKL N K+SISK
Sbjct: 241 PDPCEIKKIAAEGILTCLQDAIDSLHQNQDINQMTEEWKFVPQVVEELAKLGNKKESISK 300

Query: 301 DELRRHAADSKRIYEVELNSLLNNSPERKKKPNISKEPKNGHKAKKEMSIAHDYDSDDTI 360
           +EL RHA+DSKRIYE+ELNSLL++S ERKKKPN++KEPKNG K K       +YDSDDTI
Sbjct: 301 EELCRHASDSKRIYEIELNSLLDSSTERKKKPNVNKEPKNGRKPK-------EYDSDDTI 360

Query: 361 EMTEEEIDIAFHKVASNK 379
           EMTE+EIDIAF KVA  K
Sbjct: 361 EMTEDEIDIAFQKVACKK 369

[Close]

BLAST of Sed0021795 vs. NCBI nr
Match: XP_004135823.1 (DNA-repair protein XRCC1 [Cucumis sativus] >XP_031745260.1 DNA-repair protein XRCC1 [Cucumis sativus] >KGN45337.1 hypothetical protein Csa_016136 [Cucumis sativus])

HSP 1 Score: 595.1 bits (1533), Expect = 4.2e-166
Identity = 310/374 (82.89%), Postives = 329/374 (87.97%), Query Frame = 0


Query: 1   MSNSKANEGGGNAKRSLPSWMSGKDDESTSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDE 60
           MSNSKANEGGG+AKRSLPSWMSGKDD STSR KKP+SS S GN++M EAE PK  KGN E
Sbjct: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSASVGNDLMVEAEEPKQEKGNGE 60

Query: 61  GSVSSSLHRDFSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
           G VSSSLH DFSRLLEGVVF LSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHHDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEASQAIPSP 180
           NTPKFRQVESDCGTIVSKEWIS CYAQK+LVDIESYLL+ GKPWRR +LS EA+Q IPSP
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRCDLSREATQDIPSP 180

Query: 181 SKRPQKPVETTSHLKPTEREITQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEK 240
           SK+PQ+ VE TSHLKP E EI QSR  N SR+CFSP KLKKWAIDDYHKTLSWLESQEEK
Sbjct: 181 SKKPQRVVEKTSHLKPHEPEIAQSRRSNFSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKKSISK 300
           PDPSEIKKIAAEGILTCLQDAIDSL QNQDI+QMTEEWKFVPQVVEELAKLSN K+SISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMTEEWKFVPQVVEELAKLSNKKESISK 300

Query: 301 DELRRHAADSKRIYEVELNSLLNNSPERKKKPNISKEPKNGHKAKKEMSIAHDYDSDDTI 360
           +EL R A DSK IYEVELNSLL +SPERKKK  + KE KNGH+ K       +YDSDDTI
Sbjct: 301 EELCRQATDSKSIYEVELNSLLESSPERKKKRIVKKESKNGHETK-------EYDSDDTI 360

Query: 361 EMTEEEIDIAFHKV 375
           EMTEEEID+AFHKV
Sbjct: 361 EMTEEEIDVAFHKV 367

[Close]

BLAST of Sed0021795 vs. NCBI nr
Match: XP_016902642.1 (PREDICTED: DNA-repair protein XRCC1 isoform X2 [Cucumis melo])

HSP 1 Score: 594.7 bits (1532), Expect = 5.5e-166
Identity = 311/374 (83.16%), Postives = 328/374 (87.70%), Query Frame = 0


Query: 1   MSNSKANEGGGNAKRSLPSWMSGKDDESTSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDE 60
           MSNSKANEGGG+AKRSLPSWMSGKDD STSR KKP+SS S GN++M EAE PK  KGN E
Sbjct: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60

Query: 61  GSVSSSLHRDFSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
           G VSSSLHRDFSRLLEGVVF LSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEASQAIPSP 180
           NTPKFRQVESDCGTIVSKEWIS CYAQK+LVDIESYLL+ GKPWRRS+LSHEA+Q IPS 
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180

Query: 181 SKRPQKPVETTSHLKPTEREITQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEK 240
           SK+PQK VE  S  KP E EI QSR+ N SR+CFSP KLKKWAIDDYHKTLSWLESQEEK
Sbjct: 181 SKKPQKVVEKVSRSKPHESEIAQSRQSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKKSISK 300
           PDPSEIKKIAAEGILTCLQDAIDSL QNQDI+QM EEWKFVPQVVEELAKLSN K+SISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300

Query: 301 DELRRHAADSKRIYEVELNSLLNNSPERKKKPNISKEPKNGHKAKKEMSIAHDYDSDDTI 360
           DEL RHA DSK IYEVELNSLL+ SPERKKK NI KE K G + K       +YDSDDTI
Sbjct: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETK-------EYDSDDTI 360

Query: 361 EMTEEEIDIAFHKV 375
           EMTEEEID+AFHKV
Sbjct: 361 EMTEEEIDVAFHKV 367

[Close]

BLAST of Sed0021795 vs. NCBI nr
Match: KAG6575562.1 (DNA-repair protein XRCC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 594.3 bits (1531), Expect = 7.2e-166
Identity = 317/380 (83.42%), Postives = 334/380 (87.89%), Query Frame = 0


Query: 1   MSNSKANEGGGNAKRSLPSWMSGKDDESTSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDE 60
           MSNSKANEGGG AKRSLPSWMSGKDD STSR KKP+SS SG N+VMAEAE P+  K   E
Sbjct: 1   MSNSKANEGGGIAKRSLPSWMSGKDDGSTSRGKKPNSSCSGQNDVMAEAEEPRQEKIIGE 60

Query: 61  GSVSSSLHRDFSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
           G VSSSLH DF+RLLEGVVF LSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHTDFTRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEASQAIPSP 180
           NTPKFRQVESDCGTIVSKEWIS CYAQ+KLVDIESYLL  GKPWRRSN   EA+QA P+P
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQRKLVDIESYLLHAGKPWRRSNEPREATQAFPTP 180

Query: 181 SKRPQKPVETTSHLKPTEREITQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEK 240
           SK+PQKPVE  S LK  E+EI QSREI SSRECFSP KLKKWAIDDYHKTLSWL+SQEEK
Sbjct: 181 SKKPQKPVEKNSRLKSHEQEIAQSREIISSRECFSPSKLKKWAIDDYHKTLSWLDSQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKKSISK 300
           PDPSEIKKIAAEGILTCLQDAIDSL QNQDI+QMTEEWKFVPQVVEELAKLS+ K+SISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMTEEWKFVPQVVEELAKLSSKKESISK 300

Query: 301 DELRRHAADSKRIYEVELNSLLNNSPERKKK-PNISKEPKNGHKAKKEMSIAHDYDSDDT 360
           +EL RHA DSKRIYEVELNSLL +SPERKKK PNI+KE KNGHKAK       +YDSDDT
Sbjct: 301 EELCRHATDSKRIYEVELNSLLASSPERKKKPPNINKELKNGHKAK-------EYDSDDT 360

Query: 361 IEMTEEEIDIAFHKVASNKK 380
           IEMTEEEIDIAF KVA  KK
Sbjct: 361 IEMTEEEIDIAFQKVACKKK 373

[Close]

BLAST of Sed0021795 vs. NCBI nr
Match: XP_022954387.1 (DNA-repair protein XRCC1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 593.6 bits (1529), Expect = 1.2e-165
Identity = 316/380 (83.16%), Postives = 333/380 (87.63%), Query Frame = 0


Query: 1   MSNSKANEGGGNAKRSLPSWMSGKDDESTSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDE 60
           MSNSKANEGGGNAKRSLPSWMSGKD  STSR KKP+SS SG N+VMAEAE P+  K   E
Sbjct: 1   MSNSKANEGGGNAKRSLPSWMSGKDGGSTSRGKKPNSSCSGQNDVMAEAEEPRQEKVIGE 60

Query: 61  GSVSSSLHRDFSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
           G VSSSLH DF+RLLEGVVF LSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHTDFTRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEASQAIPSP 180
           NTPKFRQVESDCGTIVSKEWIS CYAQ+KLVDIESYLL  GKPWRRSN   EA+QA P+P
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQRKLVDIESYLLHAGKPWRRSNEPREATQAFPTP 180

Query: 181 SKRPQKPVETTSHLKPTEREITQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEK 240
           SK+PQKPVE  S LK  E+EI QSREI SSRECFSP KLKKWAIDDYHKTLSWL+SQEEK
Sbjct: 181 SKKPQKPVEKNSRLKSHEQEIAQSREIISSRECFSPSKLKKWAIDDYHKTLSWLDSQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKKSISK 300
           PDPSEIKKIAAEGILTCLQDAIDSL QNQDI+QMTEEWKFVPQVVEELAKL + K+SISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMTEEWKFVPQVVEELAKLRSKKESISK 300

Query: 301 DELRRHAADSKRIYEVELNSLLNNSPERKKK-PNISKEPKNGHKAKKEMSIAHDYDSDDT 360
           +EL RHA DSKRIYEVELNSLL +SPERKKK PNI+KE KNGHKAK       +YDSDDT
Sbjct: 301 EELCRHATDSKRIYEVELNSLLASSPERKKKPPNINKELKNGHKAK-------EYDSDDT 360

Query: 361 IEMTEEEIDIAFHKVASNKK 380
           IEMTEEEIDIAF KVA  KK
Sbjct: 361 IEMTEEEIDIAFQKVACKKK 373

[Close]

BLAST of Sed0021795 vs. ExPASy Swiss-Prot
Match: Q24JK4 (DNA-repair protein XRCC1 OS=Arabidopsis thaliana OX=3702 GN=XRCC1 PE=1 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.4e-87
Identity = 191/371 (51.48%), Postives = 244/371 (65.77%), Query Frame = 0


Query: 14  KRSLPSWMSGKDDE---STSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDEGSVSSSLHRD 73
           KR+LPSWMS +D E   S S  KKP   D G  E      AP +     E +  SS   +
Sbjct: 4   KRNLPSWMSSRDPEITPSKSHCKKP--KDEGPTEEHNSRNAPSN---KSEHAEPSSNTTE 63

Query: 74  FSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVES 133
           FS+L+EGVVF LSGFVNPERS LRSQAL MGA Y+PDWN+  TLLICAFPNTPKFRQVE+
Sbjct: 64  FSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPKFRQVET 123

Query: 134 DCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEAS-QAIPSPSKRPQKPVE 193
           + GTI+SKEWI+ CYAQKKLVDIE YL+  GKPWR+S+   +A+ +     SK+P+K VE
Sbjct: 124 NGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKREHLSKKPEKQVE 183

Query: 194 TTSHLKPTEREITQSRE-INSSRECFSPLKLKKWAIDDYHKTLSWLESQEEKPDPSEIKK 253
             +  + T    +++R   N  +E F   ++KKWA DD  +T+SWLESQEEKP+P EIK+
Sbjct: 184 KKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPEPGEIKR 243

Query: 254 IAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKK----SISKDELR 313
           IAAEG+LTCLQDAIDSL Q QDI  +TE W FVP+VV+EL K+ ++ K    + SK+E+ 
Sbjct: 244 IAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTASKEEVC 303

Query: 314 RHAADSKRIYEVELNSLLNNSPERKKKPNISKEPKNGHKAKKEMSIAHDYDSDDTIEMTE 373
           + A   K+IYE EL            KP          + +    +A  YDSD T+EMTE
Sbjct: 304 KQAKSWKKIYEAEL-----------AKPG---------EDESTSRVACGYDSDMTVEMTE 349

Query: 374 EEIDIAFHKVA 376
           EEI++A+  V+
Sbjct: 364 EEIELAYRNVS 349

[Close]

BLAST of Sed0021795 vs. ExPASy Swiss-Prot
Match: P18887 (DNA repair protein XRCC1 OS=Homo sapiens OX=9606 GN=XRCC1 PE=1 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 9.2e-23
Identity = 65/158 (41.14%), Postives = 87/158 (55.06%), Query Frame = 0


Query: 45  VMAEAEAPKHGKGNDEGSVSSSLH---RDFSRLLEGVVFALSGFVNPERSILRSQALEMG 104
           V A A+    GK   EG+          +  ++L+GVV  LSGF NP RS LR +ALE+G
Sbjct: 287 VPARAQGAVTGKPRGEGTEPRRPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELG 346

Query: 105 AQYKPDWNSDCTLLICAFPNTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLF-P 164
           A+Y+PDW  D T LICAF NTPK+ QV    G IV KEW+ +C+  ++ +    YL+  P
Sbjct: 347 AKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSRRYLMAGP 406

Query: 165 GKPWRRSNLSHEASQAIPSPSKRPQKPVETTSHLKPTE 199
           G        SH       +P K PQK  +T +  KPT+
Sbjct: 407 GSSSEEDEASHSGGSGDEAP-KLPQKQPQTKT--KPTQ 441

[Close]

BLAST of Sed0021795 vs. ExPASy Swiss-Prot
Match: Q9ESZ0 (DNA repair protein XRCC1 OS=Rattus norvegicus OX=10116 GN=Xrcc1 PE=1 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-21
Identity = 61/143 (42.66%), Postives = 80/143 (55.94%), Query Frame = 0


Query: 55  GKGNDEGSVSSSLH---RDFSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSD 114
           GK   EG+         ++  ++L+GVV  LSGF NP RS LR +ALE+GA+Y+PDW  D
Sbjct: 297 GKPRGEGTEPRGARAGPQELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPD 356

Query: 115 CTLLICAFPNTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLFP-GKPWRRSNLS 174
            T LICAF NTPK+ QV    G IV KEW+ +CY  ++ +    YL+   G        S
Sbjct: 357 STHLICAFANTPKYSQVLGLGGRIVRKEWVLDCYRMRRRLPSRRYLMAGLGSSSEDEGDS 416

Query: 175 HEAS---QAIPSPSKRPQKPVET 191
           H  S   +A   P KRPQ   +T
Sbjct: 417 HSESGEDEAPKLPRKRPQPKAKT 439

[Close]

BLAST of Sed0021795 vs. ExPASy Swiss-Prot
Match: Q60596 (DNA repair protein XRCC1 OS=Mus musculus OX=10090 GN=Xrcc1 PE=1 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 4.3e-20
Identity = 68/178 (38.20%), Postives = 89/178 (50.00%), Query Frame = 0


Query: 24  KDDESTSRSKKPSSSDSGGNEVMAEAEAPKH----GKGNDEGSVSSSLH---RDFSRLLE 83
           K     S  K+P  S        A A  P      GK   EG+         ++  ++L+
Sbjct: 262 KPSAGPSTLKRPKLSVPSRTPAAAPASTPAQRAVPGKPRGEGTEPRGARTGPQELGKILQ 321

Query: 84  GVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVESDCGTIV 143
           GVV  LSGF NP RS LR +ALE+GA+Y+PDW  D T LICAF NTPK+ QV    G IV
Sbjct: 322 GVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGRIV 381

Query: 144 SKEWISNCYAQKKLVDIESYLLFP-GKPWRRSNLSHEAS---QAIPSPSKRPQKPVET 191
            KEW+ +C+  ++ +    YL+   G        SH  S   +A   P KRPQ   +T
Sbjct: 382 RKEWVLDCHHMRRRLPSRRYLMAGLGSSSEDEGDSHSESGEDEAPKLPQKRPQPKAKT 439

[Close]

BLAST of Sed0021795 vs. ExPASy Swiss-Prot
Match: O54935 (DNA repair protein XRCC1 OS=Cricetulus griseus OX=10029 GN=XRCC1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.8e-19
Identity = 66/191 (34.55%), Postives = 96/191 (50.26%), Query Frame = 0


Query: 24  KDDESTSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDEGSVSSSLHRDFSRLLEGVVFALS 83
           K  + T  S+ P+++ +      A+  AP   +   E   + +  ++  ++L+GVV  LS
Sbjct: 273 KRPKLTVPSRSPAAAAA---STPAQKAAPGKPREGTEPRGARAGPQELGKILQGVVVVLS 332

Query: 84  GFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVESDCGTIVSKEWISN 143
           GF NP RS LR +ALE+GA+Y+PDW  D T LICAF NTPK+ QV    G IV KEW+ +
Sbjct: 333 GFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLD 392

Query: 144 CYAQKKLVDIESYLL-------------FPGKPW---------RRSNLSHEASQAIPSPS 193
           CY  ++ +    YL+              PG+           +R     +   A PS  
Sbjct: 393 CYRLRRRLPSRRYLMAGLGSSSEDEEDDSPGESGEDEAPKLSRKRPQAKAKTQAAGPSSP 452

[Close]

BLAST of Sed0021795 vs. ExPASy TrEMBL
Match: A0A0A0KAC1 (BRCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G440580 PE=4 SV=1)

HSP 1 Score: 595.1 bits (1533), Expect = 2.0e-166
Identity = 310/374 (82.89%), Postives = 329/374 (87.97%), Query Frame = 0


Query: 1   MSNSKANEGGGNAKRSLPSWMSGKDDESTSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDE 60
           MSNSKANEGGG+AKRSLPSWMSGKDD STSR KKP+SS S GN++M EAE PK  KGN E
Sbjct: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSASVGNDLMVEAEEPKQEKGNGE 60

Query: 61  GSVSSSLHRDFSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
           G VSSSLH DFSRLLEGVVF LSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHHDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEASQAIPSP 180
           NTPKFRQVESDCGTIVSKEWIS CYAQK+LVDIESYLL+ GKPWRR +LS EA+Q IPSP
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRCDLSREATQDIPSP 180

Query: 181 SKRPQKPVETTSHLKPTEREITQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEK 240
           SK+PQ+ VE TSHLKP E EI QSR  N SR+CFSP KLKKWAIDDYHKTLSWLESQEEK
Sbjct: 181 SKKPQRVVEKTSHLKPHEPEIAQSRRSNFSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKKSISK 300
           PDPSEIKKIAAEGILTCLQDAIDSL QNQDI+QMTEEWKFVPQVVEELAKLSN K+SISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMTEEWKFVPQVVEELAKLSNKKESISK 300

Query: 301 DELRRHAADSKRIYEVELNSLLNNSPERKKKPNISKEPKNGHKAKKEMSIAHDYDSDDTI 360
           +EL R A DSK IYEVELNSLL +SPERKKK  + KE KNGH+ K       +YDSDDTI
Sbjct: 301 EELCRQATDSKSIYEVELNSLLESSPERKKKRIVKKESKNGHETK-------EYDSDDTI 360

Query: 361 EMTEEEIDIAFHKV 375
           EMTEEEID+AFHKV
Sbjct: 361 EMTEEEIDVAFHKV 367

[Close]

BLAST of Sed0021795 vs. ExPASy TrEMBL
Match: A0A1S4E338 (DNA-repair protein XRCC1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499750 PE=4 SV=1)

HSP 1 Score: 594.7 bits (1532), Expect = 2.7e-166
Identity = 311/374 (83.16%), Postives = 328/374 (87.70%), Query Frame = 0


Query: 1   MSNSKANEGGGNAKRSLPSWMSGKDDESTSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDE 60
           MSNSKANEGGG+AKRSLPSWMSGKDD STSR KKP+SS S GN++M EAE PK  KGN E
Sbjct: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60

Query: 61  GSVSSSLHRDFSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
           G VSSSLHRDFSRLLEGVVF LSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEASQAIPSP 180
           NTPKFRQVESDCGTIVSKEWIS CYAQK+LVDIESYLL+ GKPWRRS+LSHEA+Q IPS 
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180

Query: 181 SKRPQKPVETTSHLKPTEREITQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEK 240
           SK+PQK VE  S  KP E EI QSR+ N SR+CFSP KLKKWAIDDYHKTLSWLESQEEK
Sbjct: 181 SKKPQKVVEKVSRSKPHESEIAQSRQSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKKSISK 300
           PDPSEIKKIAAEGILTCLQDAIDSL QNQDI+QM EEWKFVPQVVEELAKLSN K+SISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300

Query: 301 DELRRHAADSKRIYEVELNSLLNNSPERKKKPNISKEPKNGHKAKKEMSIAHDYDSDDTI 360
           DEL RHA DSK IYEVELNSLL+ SPERKKK NI KE K G + K       +YDSDDTI
Sbjct: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETK-------EYDSDDTI 360

Query: 361 EMTEEEIDIAFHKV 375
           EMTEEEID+AFHKV
Sbjct: 361 EMTEEEIDVAFHKV 367

[Close]

BLAST of Sed0021795 vs. ExPASy TrEMBL
Match: A0A6J1GQV2 (DNA-repair protein XRCC1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456640 PE=4 SV=1)

HSP 1 Score: 593.6 bits (1529), Expect = 5.9e-166
Identity = 316/380 (83.16%), Postives = 333/380 (87.63%), Query Frame = 0


Query: 1   MSNSKANEGGGNAKRSLPSWMSGKDDESTSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDE 60
           MSNSKANEGGGNAKRSLPSWMSGKD  STSR KKP+SS SG N+VMAEAE P+  K   E
Sbjct: 1   MSNSKANEGGGNAKRSLPSWMSGKDGGSTSRGKKPNSSCSGQNDVMAEAEEPRQEKVIGE 60

Query: 61  GSVSSSLHRDFSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
           G VSSSLH DF+RLLEGVVF LSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHTDFTRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEASQAIPSP 180
           NTPKFRQVESDCGTIVSKEWIS CYAQ+KLVDIESYLL  GKPWRRSN   EA+QA P+P
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQRKLVDIESYLLHAGKPWRRSNEPREATQAFPTP 180

Query: 181 SKRPQKPVETTSHLKPTEREITQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEK 240
           SK+PQKPVE  S LK  E+EI QSREI SSRECFSP KLKKWAIDDYHKTLSWL+SQEEK
Sbjct: 181 SKKPQKPVEKNSRLKSHEQEIAQSREIISSRECFSPSKLKKWAIDDYHKTLSWLDSQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKKSISK 300
           PDPSEIKKIAAEGILTCLQDAIDSL QNQDI+QMTEEWKFVPQVVEELAKL + K+SISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMTEEWKFVPQVVEELAKLRSKKESISK 300

Query: 301 DELRRHAADSKRIYEVELNSLLNNSPERKKK-PNISKEPKNGHKAKKEMSIAHDYDSDDT 360
           +EL RHA DSKRIYEVELNSLL +SPERKKK PNI+KE KNGHKAK       +YDSDDT
Sbjct: 301 EELCRHATDSKRIYEVELNSLLASSPERKKKPPNINKELKNGHKAK-------EYDSDDT 360

Query: 361 IEMTEEEIDIAFHKVASNKK 380
           IEMTEEEIDIAF KVA  KK
Sbjct: 361 IEMTEEEIDIAFQKVACKKK 373

[Close]

BLAST of Sed0021795 vs. ExPASy TrEMBL
Match: A0A6J1JPF0 (DNA-repair protein XRCC1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488656 PE=4 SV=1)

HSP 1 Score: 591.7 bits (1524), Expect = 2.2e-165
Identity = 315/380 (82.89%), Postives = 332/380 (87.37%), Query Frame = 0


Query: 1   MSNSKANEGGGNAKRSLPSWMSGKDDESTSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDE 60
           MSNSKANEGGGNAKRSLPSWMSGKDD STSR KKP+SS SG N+VM EAE P+  K   E
Sbjct: 1   MSNSKANEGGGNAKRSLPSWMSGKDDGSTSRGKKPNSSCSGQNDVMGEAEEPRQEKVIGE 60

Query: 61  GSVSSSLHRDFSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
           G VSSSLH DF+RLLEGVVF LSGFVNPERSILRSQALEMGAQYKPDWNS CTLLICAFP
Sbjct: 61  GPVSSSLHTDFTRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSVCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEASQAIPSP 180
           NTPKFRQVESDCGTIVSKEWIS CYAQ+KLVDIESYLL  GKPWRRSN   E +QA P+P
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQRKLVDIESYLLHAGKPWRRSNEPRETTQAFPTP 180

Query: 181 SKRPQKPVETTSHLKPTEREITQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEK 240
           SK+PQKPVE  S LK  E+EI QSREI SSRECFSP KLKKWAIDDYHKTLSWL+SQEEK
Sbjct: 181 SKKPQKPVEKNSRLKSHEQEIAQSREIISSRECFSPSKLKKWAIDDYHKTLSWLDSQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKKSISK 300
           PDPSEIKKIAAEGILTCLQDAIDSL QNQDI+QMTEEWKFVPQVVEELAKLS+ K+SISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMTEEWKFVPQVVEELAKLSSKKESISK 300

Query: 301 DELRRHAADSKRIYEVELNSLLNNSPERKKK-PNISKEPKNGHKAKKEMSIAHDYDSDDT 360
           +EL RHA DSKRIYEVELNSLL +SPERKKK PNI+KE KNGHKAK       +YDSDDT
Sbjct: 301 EELCRHATDSKRIYEVELNSLLASSPERKKKPPNINKELKNGHKAK-------EYDSDDT 360

Query: 361 IEMTEEEIDIAFHKVASNKK 380
           IEMTEEEIDIAF KVA  KK
Sbjct: 361 IEMTEEEIDIAFQKVACKKK 373

[Close]

BLAST of Sed0021795 vs. ExPASy TrEMBL
Match: A0A6J1D979 (DNA-repair protein XRCC1 OS=Momordica charantia OX=3673 GN=LOC111018759 PE=4 SV=1)

HSP 1 Score: 590.9 bits (1522), Expect = 3.8e-165
Identity = 307/379 (81.00%), Postives = 336/379 (88.65%), Query Frame = 0


Query: 1   MSNSKANEGGGNAKRSLPSWMSGKDDESTSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDE 60
           MSNSK N GGG+AKRSLPSWMSGKDD STSR KKP+SS SGGNEV+AEAE  K G GN E
Sbjct: 1   MSNSKTNLGGGSAKRSLPSWMSGKDDGSTSRGKKPTSSGSGGNEVIAEAEEGKQGSGNGE 60

Query: 61  GSVSSSLHRDFSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
             +SSSLHRDFS+LLEGVVF LSGFVNPERSILRSQALEMGAQY+PDWNSDCTLLICAFP
Sbjct: 61  DPISSSLHRDFSKLLEGVVFVLSGFVNPERSILRSQALEMGAQYQPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEASQA-IPS 180
           NTPKFRQVESDCGTIVSKEWIS CYAQKKL+DIES+LL  GKPWRRSNLSHEA QA I S
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISGCYAQKKLIDIESHLLHAGKPWRRSNLSHEARQAKIAS 180

Query: 181 PSKRPQKPVETTSHLKPTEREITQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEE 240
            SK+PQKPVE TSHLK  E++I+QSR+ NSSRECFSP KLKKWA DDY+KT+SWLESQEE
Sbjct: 181 SSKKPQKPVERTSHLKQNEQDISQSRDNNSSRECFSPPKLKKWATDDYNKTISWLESQEE 240

Query: 241 KPDPSEIKKIAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKKSIS 300
           KPDPSEIKKIAAEGILTCLQDAIDSL Q+QDI+Q+TEEWKFVPQVVEELAKL + K+SIS
Sbjct: 241 KPDPSEIKKIAAEGILTCLQDAIDSLHQDQDINQVTEEWKFVPQVVEELAKLCSKKESIS 300

Query: 301 KDELRRHAADSKRIYEVELNSLLNNSPERKKKPNISKEPKNGHKAKKEMSIAHDYDSDDT 360
           K+ELRR A DSK+IYEVELN LL+NSP+RKK+PNISKE KNG K K++  +A  YDSDDT
Sbjct: 301 KEELRRQAIDSKKIYEVELNFLLDNSPDRKKRPNISKELKNGCKEKEDERVARGYDSDDT 360

Query: 361 IEMTEEEIDIAFHKVASNK 379
           IEMTEEEID+AF  VA  K
Sbjct: 361 IEMTEEEIDLAFQNVACKK 379

[Close]

BLAST of Sed0021795 vs. TAIR 10
Match: AT1G80420.1 (BRCT domain-containing DNA repair protein )

HSP 1 Score: 324.7 bits (831), Expect = 9.9e-89
Identity = 191/371 (51.48%), Postives = 244/371 (65.77%), Query Frame = 0


Query: 14  KRSLPSWMSGKDDE---STSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDEGSVSSSLHRD 73
           KR+LPSWMS +D E   S S  KKP   D G  E      AP +     E +  SS   +
Sbjct: 4   KRNLPSWMSSRDPEITPSKSHCKKP--KDEGPTEEHNSRNAPSN---KSEHAEPSSNTTE 63

Query: 74  FSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVES 133
           FS+L+EGVVF LSGFVNPERS LRSQAL MGA Y+PDWN+  TLLICAFPNTPKFRQVE+
Sbjct: 64  FSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPKFRQVET 123

Query: 134 DCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEAS-QAIPSPSKRPQKPVE 193
           + GTI+SKEWI+ CYAQKKLVDIE YL+  GKPWR+S+   +A+ +     SK+P+K VE
Sbjct: 124 NGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKREHLSKKPEKQVE 183

Query: 194 TTSHLKPTEREITQSRE-INSSRECFSPLKLKKWAIDDYHKTLSWLESQEEKPDPSEIKK 253
             +  + T    +++R   N  +E F   ++KKWA DD  +T+SWLESQEEKP+P EIK+
Sbjct: 184 KKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPEPGEIKR 243

Query: 254 IAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKK----SISKDELR 313
           IAAEG+LTCLQDAIDSL Q QDI  +TE W FVP+VV+EL K+ ++ K    + SK+E+ 
Sbjct: 244 IAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTASKEEVC 303

Query: 314 RHAADSKRIYEVELNSLLNNSPERKKKPNISKEPKNGHKAKKEMSIAHDYDSDDTIEMTE 373
           + A   K+IYE EL            KP          + +    +A  YDSD T+EMTE
Sbjct: 304 KQAKSWKKIYEAEL-----------AKPG---------EDESTSRVACGYDSDMTVEMTE 349

Query: 374 EEIDIAFHKVA 376
           EEI++A+  V+
Sbjct: 364 EEIELAYRNVS 349

[Close]

BLAST of Sed0021795 vs. TAIR 10
Match: AT1G80420.2 (BRCT domain-containing DNA repair protein )

HSP 1 Score: 324.7 bits (831), Expect = 9.9e-89
Identity = 191/371 (51.48%), Postives = 244/371 (65.77%), Query Frame = 0


Query: 14  KRSLPSWMSGKDDE---STSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDEGSVSSSLHRD 73
           KR+LPSWMS +D E   S S  KKP   D G  E      AP +     E +  SS   +
Sbjct: 4   KRNLPSWMSSRDPEITPSKSHCKKP--KDEGPTEEHNSRNAPSN---KSEHAEPSSNTTE 63

Query: 74  FSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVES 133
           FS+L+EGVVF LSGFVNPERS LRSQAL MGA Y+PDWN+  TLLICAFPNTPKFRQVE+
Sbjct: 64  FSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPKFRQVET 123

Query: 134 DCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEAS-QAIPSPSKRPQKPVE 193
           + GTI+SKEWI+ CYAQKKLVDIE YL+  GKPWR+S+   +A+ +     SK+P+K VE
Sbjct: 124 NGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKREHLSKKPEKQVE 183

Query: 194 TTSHLKPTEREITQSRE-INSSRECFSPLKLKKWAIDDYHKTLSWLESQEEKPDPSEIKK 253
             +  + T    +++R   N  +E F   ++KKWA DD  +T+SWLESQEEKP+P EIK+
Sbjct: 184 KKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPEPGEIKR 243

Query: 254 IAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKK----SISKDELR 313
           IAAEG+LTCLQDAIDSL Q QDI  +TE W FVP+VV+EL K+ ++ K    + SK+E+ 
Sbjct: 244 IAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTASKEEVC 303

Query: 314 RHAADSKRIYEVELNSLLNNSPERKKKPNISKEPKNGHKAKKEMSIAHDYDSDDTIEMTE 373
           + A   K+IYE EL            KP          + +    +A  YDSD T+EMTE
Sbjct: 304 KQAKSWKKIYEAEL-----------AKPG---------EDESTSRVACGYDSDMTVEMTE 349

Query: 374 EEIDIAFHKVA 376
           EEI++A+  V+
Sbjct: 364 EEIELAYRNVS 349

[Close]

BLAST of Sed0021795 vs. TAIR 10
Match: AT1G80420.3 (BRCT domain-containing DNA repair protein )

HSP 1 Score: 324.7 bits (831), Expect = 9.9e-89
Identity = 191/371 (51.48%), Postives = 244/371 (65.77%), Query Frame = 0


Query: 14  KRSLPSWMSGKDDE---STSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDEGSVSSSLHRD 73
           KR+LPSWMS +D E   S S  KKP   D G  E      AP +     E +  SS   +
Sbjct: 4   KRNLPSWMSSRDPEITPSKSHCKKP--KDEGPTEEHNSRNAPSN---KSEHAEPSSNTTE 63

Query: 74  FSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVES 133
           FS+L+EGVVF LSGFVNPERS LRSQAL MGA Y+PDWN+  TLLICAFPNTPKFRQVE+
Sbjct: 64  FSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPKFRQVET 123

Query: 134 DCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEAS-QAIPSPSKRPQKPVE 193
           + GTI+SKEWI+ CYAQKKLVDIE YL+  GKPWR+S+   +A+ +     SK+P+K VE
Sbjct: 124 NGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKREHLSKKPEKQVE 183

Query: 194 TTSHLKPTEREITQSRE-INSSRECFSPLKLKKWAIDDYHKTLSWLESQEEKPDPSEIKK 253
             +  + T    +++R   N  +E F   ++KKWA DD  +T+SWLESQEEKP+P EIK+
Sbjct: 184 KKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPEPGEIKR 243

Query: 254 IAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKK----SISKDELR 313
           IAAEG+LTCLQDAIDSL Q QDI  +TE W FVP+VV+EL K+ ++ K    + SK+E+ 
Sbjct: 244 IAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTASKEEVC 303

Query: 314 RHAADSKRIYEVELNSLLNNSPERKKKPNISKEPKNGHKAKKEMSIAHDYDSDDTIEMTE 373
           + A   K+IYE EL            KP          + +    +A  YDSD T+EMTE
Sbjct: 304 KQAKSWKKIYEAEL-----------AKPG---------EDESTSRVACGYDSDMTVEMTE 349

Query: 374 EEIDIAFHKVA 376
           EEI++A+  V+
Sbjct: 364 EEIELAYRNVS 349

[Close]

BLAST of Sed0021795 vs. TAIR 10
Match: AT1G80420.4 (BRCT domain-containing DNA repair protein )

HSP 1 Score: 313.2 bits (801), Expect = 3.0e-85
Identity = 186/371 (50.13%), Postives = 237/371 (63.88%), Query Frame = 0


Query: 14  KRSLPSWMSGKDDE---STSRSKKPSSSDSGGNEVMAEAEAPKHGKGNDEGSVSSSLHRD 73
           KR+LPSWMS +D E   S S  KKP   D G  E      AP +     E +  SS   +
Sbjct: 4   KRNLPSWMSSRDPEITPSKSHCKKP--KDEGPTEEHNSRNAPSN---KSEHAEPSSNTTE 63

Query: 74  FSRLLEGVVFALSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVES 133
           FS+L+EGVVF LSGFVNPERS LRSQAL MGA Y+PDWN+  TLLICAFPNTPKFRQVE+
Sbjct: 64  FSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPKFRQVET 123

Query: 134 DCGTIVSKEWISNCYAQKKLVDIESYLLFPGKPWRRSNLSHEASQAIPSPSKRPQKPVET 193
           + GTI+SKEWI+ CYAQKKLVDIE YL+  GKPWR+S+   +A++             ++
Sbjct: 124 NGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANRE------------KS 183

Query: 194 TSHLKPTEREITQSRE--INSSRECFSPLKLKKWAIDDYHKTLSWLESQEEKPDPSEIKK 253
            S+   + R +  S     N  +E F   ++KKWA DD  +T+SWLESQEEKP+P EIK+
Sbjct: 184 FSYCTASLRCLVDSNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPEPGEIKR 243

Query: 254 IAAEGILTCLQDAIDSLRQNQDISQMTEEWKFVPQVVEELAKLSNTKK----SISKDELR 313
           IAAEG+LTCLQDAIDSL Q QDI  +TE W FVP+VV+EL K+ ++ K    + SK+E+ 
Sbjct: 244 IAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTASKEEVC 303

Query: 314 RHAADSKRIYEVELNSLLNNSPERKKKPNISKEPKNGHKAKKEMSIAHDYDSDDTIEMTE 373
           + A   K+IYE EL            KP          + +    +A  YDSD T+EMTE
Sbjct: 304 KQAKSWKKIYEAEL-----------AKPG---------EDESTSRVACGYDSDMTVEMTE 337

Query: 374 EEIDIAFHKVA 376
           EEI++A+  V+
Sbjct: 364 EEIELAYRNVS 337

The following BLAST results are available for this feature:

BLAST of Sed0021795 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899733.1	2.4e-169	83.33	DNA-repair protein XRCC1 [Benincasa hispida] >XP_038899734.1 DNA-repair protein ...	[more]
XP_004135823.1	4.2e-166	82.89	DNA-repair protein XRCC1 [Cucumis sativus] >XP_031745260.1 DNA-repair protein XR...	[more]
XP_016902642.1	5.5e-166	83.16	PREDICTED: DNA-repair protein XRCC1 isoform X2 [Cucumis melo]	[more]
KAG6575562.1	7.2e-166	83.42	DNA-repair protein XRCC1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022954387.1	1.2e-165	83.16	DNA-repair protein XRCC1 isoform X2 [Cucurbita moschata]	[more]

BLAST of Sed0021795 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q24JK4	1.4e-87	51.48	DNA-repair protein XRCC1 OS=Arabidopsis thaliana OX=3702 GN=XRCC1 PE=1 SV=1	[more]
P18887	9.2e-23	41.14	DNA repair protein XRCC1 OS=Homo sapiens OX=9606 GN=XRCC1 PE=1 SV=2	[more]
Q9ESZ0	1.3e-21	42.66	DNA repair protein XRCC1 OS=Rattus norvegicus OX=10116 GN=Xrcc1 PE=1 SV=2	[more]
Q60596	4.3e-20	38.20	DNA repair protein XRCC1 OS=Mus musculus OX=10090 GN=Xrcc1 PE=1 SV=2	[more]
O54935	2.8e-19	34.55	DNA repair protein XRCC1 OS=Cricetulus griseus OX=10029 GN=XRCC1 PE=2 SV=1	[more]

BLAST of Sed0021795 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAC1	2.0e-166	82.89	BRCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G440580 PE=4 S...	[more]
A0A1S4E338	2.7e-166	83.16	DNA-repair protein XRCC1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499750 PE=4...	[more]
A0A6J1GQV2	5.9e-166	83.16	DNA-repair protein XRCC1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11145664...	[more]
A0A6J1JPF0	2.2e-165	82.89	DNA-repair protein XRCC1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488656 ...	[more]
A0A6J1D979	3.8e-165	81.00	DNA-repair protein XRCC1 OS=Momordica charantia OX=3673 GN=LOC111018759 PE=4 SV=...	[more]

BLAST of Sed0021795 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80420.1	9.9e-89	51.48	BRCT domain-containing DNA repair protein	[more]
AT1G80420.2	9.9e-89	51.48	BRCT domain-containing DNA repair protein	[more]
AT1G80420.3	9.9e-89	51.48	BRCT domain-containing DNA repair protein	[more]
AT1G80420.4	3.0e-85	50.13	BRCT domain-containing DNA repair protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001357	BRCT domain	SMART	SM00292	BRCT_7	coord: 72..148 e-value: 2.5E-7 score: 40.3
IPR001357	BRCT domain	PFAM	PF00533	BRCT	coord: 73..144 e-value: 4.3E-9 score: 36.6
IPR001357	BRCT domain	PROSITE	PS50172	BRCT	coord: 70..158 score: 16.70582
IPR036420	BRCT domain superfamily	GENE3D	3.40.50.10190	BRCT domain	coord: 68..158 e-value: 1.1E-25 score: 91.8
IPR036420	BRCT domain superfamily	SUPERFAMILY	52113	BRCT domain	coord: 66..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..352
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 329..352
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	PANTHER	PTHR11370	DNA-REPAIR PROTEIN XRCC1	coord: 33..378
None	No IPR available	PANTHER	PTHR11370:SF5	DNA REPAIR PROTEIN XRCC1	coord: 33..378
IPR045080	XRCC1, first (central) BRCT domain	CDD	cd17725	BRCT_XRCC1_rpt1	coord: 77..156 e-value: 2.07162E-47 score: 153.971

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021795.1	Sed0021795.1	mRNA
Sed0021795.2	Sed0021795.2	mRNA
Sed0021795.3	Sed0021795.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0000012	single strand break repair
molecular_function	GO:0003684	damaged DNA binding