Sed0021765 (gene) Chayote v1

Overview


Name	Sed0021765
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ribosome biogenesis regulatory protein
Location	LG12: 33875713 .. 33880107 (-)
RNA-Seq Expression	Sed0021765
Synteny	Sed0021765

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAACATGTGTAAACCTTCCATATAAAACGACGTCGTTTTTTCCCCGGGTTATCTCTTGTCCCGTTCATAAACCCTGATTCTTCGTCATTAGGGTATTTTCTCTTCCGCCGGAGATGGAGAACGAACAGCAACTTCTGGTCGACGTCGGTCATCTTCTGGGGTTCAATCCTCACCACCACTTCATCTCTCCGCCGGCCTCTAGGTCAGTCTCTTATCTTTTCAATAGATTCTTTCTTCGACCACTTTAACTTCACCTATAATCGCTACACGGACTAGGTTTCGCATTCAATCGGGTTTACCTTGATTCACGCTTTTGAATCTGAACCAGGGAAGTTTTTTTTTTTTTTGACTATGTGTTTCAAAAGAATTATTGAAAGTGCGTTATGGAGAAGAGTTTGATAATTAGATAGAATTCTGTTGTTACCATTGTTGGGTTGACCTAGTGGTCAAAGAGGATACTGGAGAATTAAGAAAGAATGTCCTACGGGTCTCCAAGGGTGGTGCGATGGTCAAATGCTTTGGTTTTGAACGTCTTCTCCCCTCAAAATTTTAGGTCGAAACTCACCCGTCAATTTGTAGACACCTTCCATGTCTTCGTTCCTTTGATGTTTGGCTTAGGGATGGGTGTGGTTATCCATAATGGCTCCAATTTTCCAGTTTCTAAAAAAAAATTCCAGAGGTTTCTTGACATTTTTTTTTGAAACAAGGGTAACCACACCCGTTCATAGGCCAGGCACGGGAGACATCGAAGAAGTATTGTCACATGAAAGAGGTTTCTTGACATTCAAATGTTTTAAACTGGTTCGGATGGTAATGGATATAATAAAAAAGCAAGTTATGGAAAAGAGTTTGATAATTAGAGTTGAGAGAATTCTGGTGCTAGATATGAACCTAATAACACATTTGAGGGTTTTGGTTATTTAAAATATGATGCTTCGATGTCTCCGGTGCCTGGCTTAGGGACGGGCATGGTTACCTTATTAAAAAAAAAAAAAAAAAATGATGCATCATTTTGGACTCATTGGCACGTACATACATCAATATGTTATTGGAAGAGAATCTTGATTACTTTTATAATTACAGGGAGGAGCTAGTGAATGAATGTCTACAGAAGGGTACGGAGCTAGTTCAAGCTATCGCGAATGAACTTTTCACCCTACCCTCAACTGAAGACAGAGCTGGTCCTCTAGTGATGTTGCCTCCACCTAAAACTAGATTGCCAAGGGAGAAACATGTAAGCCATTGAAGAAATTTATGTTTTTGTAGTTTAGCGTCTCATTGTCACTTTTAAACTATGGATGTTTACATTTTTTTTGTTGATGTGATGTCTTTCTTTCTTTTCAGCTTCCAAGGCCTAAGCCTCCTACAAAATGGGAACTTTTTGCTCAAAAAAGAGGTTGGTCATTTTTCTTATGCTTTTACCTTTCATCCTTTTTTGTGCTGTTTTGTTTTGTAAGATTCATATTTCCAATCCTTCAATTGTGCGGCTTGGATTGAAATGAGCTGAAAGGCTGCCTTGCGGTTAGGAAAAAACTAGTAGAGAAGAAAATAAACAACTAACAAGAAGAATGAGAAGAAAAGAAACAACTAACAAGAAGAATGGGAGGCATATTCAAGTCAAATACAAAACTTTGGAATTGGGAGCTACTAGGGTAGAATTTAATTTTAGTACTTGTTGACTTTTGCAGGTATAAAGAACAGGAAGAAAGACAAGATTGCATATGATGAGCAGACTCATTCATGGAAGCGCCGTCATGGTTATGATCGTGCAAATGATGAAGAGAATATACCCATTATTGAGGCCAAGATGACTGATGGTATTGTTAATTTGACCTTGCATTCTAACATAACCTACATTTCTGTTTCTTGTTCAAAAAAAAAGAAAAAAGAAAAAGATAAGCTACTTTTCTTTTATATGTCATTTGTATTTTCTTTCTTGATGTCAAAATGCCGAACCTGATTGTTTGACAGAGATTGTCTTCCATTTTTTTTGATTTGACAAAGATAATTCGAATACTGATTGATTCTATTACTTGCTCTATTCAATCTCAACTAACATAAAAATCAAAATGTCCACTAAGTGCCATGTTTTTTGCATTTGCAGAGCCGGGGATGGACCCCTTTGCTGAGAGACGAGCAAAGAAGAATGAACGAGTTGAAAAGCAAGAAAAGAACCGCCTACAGAATCTGAAACAGGCTGCTAAAGTTGGTGCTTTGCCAAGGTTTTACCCTCTTATCTCAGTTATTGTGTGTCCAACAAGTAATTCACAACCATATCATACCAATATGTGCATATTTTTCTAAAACTTATTTGTGAGTAATGTTTTAAAAGGCTAAAGACAGCCTCAAGGCTTTGCTTTTTGAGAAGGTGGGGCGTAAGTCTCGAGGTGGTATGAGGCATAAGCCTCAATTTCTATTAGAAACATTATAAAAATTCTAAATTTGTGTGAATGTGCATGGTAAAACATAATACTGGCATAAAATACGTAAAACAACAATAAAGGATTGAGTTCTTTTGGAATAAGAAACAATTTCATTGATGAATGAAACGTAATGAATTCTCTAAGCACCTATTGTGAATACAAAAAAGAACTTTAAAAGTAGATGTGAGAGGAAAATAAGTCAACAAATTATCAAAATTAAATCGATGGTTTTGAAATGATTGTGTGCCTAAGAATCCATAAGAGAAAATCTATGATCTAAATGGATGACAAAAGCAATGCTTGAGAATGTGATCATAAACCAATTTCACTTACGTTTAAAGCTTATCTATCTCAATGAACTAATAATAATGGGATTGAGTTATGTTATAAAACATTGAAGACAAATTTTTATAAAGGATTAGATTATTTTATACATTTTTTGTAATCAATGTTTTTAAGTGTTGGTAAAAGTAGTAATAATTCATATTGTTATTGTTCAACCCTGTATTCCAAAGAATGGAAAAAATTAATGCTATTCTTCTAGTTATTTGACAAGGCATAGGGACTTTAAGCCTCAGAATGTTATCATAGAGTCCTAAGCCTCTTATACGATCCAACAAAGGTACAAGGCTCAAAGACTTAAAATTAGAGTCTCGCCTCAAGATGTAAGGCTCAATATCCTTTTAAAACATTGTTTGTTTGTGAGTGTTCGGTCCAACATGTGTTGTGGCAAGGAAAGTGGAGCATTTGATCATATCTTATCAATATGTGCATTTGCTTAATTAAGTTTCTTCGATAATTTCCCTTCTGAAACTGTGGCAAGGCAGGTGGAGCTTTTGATCACAACTCGCATGTGTTGTTAAATCCATTGATTTGTCCCTTTTATTACCAACAGTATCTTATTGTCTAAATCCATCTTTTGATCTTCCTCATTATTTTGTTATATACAGTAGCTAAAGTCTATTAAACTCATGCAGCCACGTTCAACTAGCGGCAACTGCTTTGCCAATAACAGGGACGCAAGCTTCAACAAAGAAAATAACAAAAGATGAGCTTGGAAATGTGGCAGGAATGGCAGCAACAGCGACCGCTAGTGGTGGAAAATTCGACAAGAAGTTGCCCGGCGAAAAGCCTGCAAAGCATGATGGAAAATATCGCAAGGTTAACCAAAATCCATGACTTCACTTAAAAACAATCCTTTTCCATGGCATGCTCAAGCATATATTATATACTATCACAAAGTTACATATATTGTTCTTTGTTTACCTGCAGTTTTTGCCTGTTGTGGAAGGAACTGGTGTAGGCTCTCGAGAAAGGGAACAAACCGAAAAAGTCCTGAACCGACTAATATCGAAGAATTCACATGAGATACTAAACGTCAATAAGGTCTATTTTTATTTTTGGTTGAAACCAACATTTTTCCTTTCATCATTGGAAATTTTGTCTAACCATGGTCTTCACTAATTCTCTTGATTTTATAGGCTGTCAACATGTACAATGTGAAAAGTGAAAAGAGGCGAAAACGTGATGATAGAAAGCCCTCGTCATCGACATCGAGCAAGTTGAAACCGAATAAGAAACTTCAAAAGAAGTCACCAAAGGGACCATCGAAGAAAGTTAAGACAAAATGAAGTTATCCTGTATAATCGATGGCATTTTTATTAGAGTTCGTGTACTACTCTTATCTACTTTATGGAAGAAATTTTGCATTTGGACTATTTATTGTAGTAAGGATTTCCATTTACAGAATAGCGATTGATTGTCTTTCTCACACATTAGCAAAAGGGAACATGAAGTTTTTAGAGATTGACCAGTGAGTTCCCAACTTGTAGCAATCGCTATGATATTTTTAAGAATACACTAGAAATGATATTGGTGCTATGTGATTTTGTATTCATTTATGATTATGAAATGTAGAACAAATCCAGGGACATGATTAGAAAAAAAAATCTTGTAGTTTGATTGATAA

mRNA sequence

GAAAAACATGTGTAAACCTTCCATATAAAACGACGTCGTTTTTTCCCCGGGTTATCTCTTGTCCCGTTCATAAACCCTGATTCTTCGTCATTAGGGTATTTTCTCTTCCGCCGGAGATGGAGAACGAACAGCAACTTCTGGTCGACGTCGGTCATCTTCTGGGGTTCAATCCTCACCACCACTTCATCTCTCCGCCGGCCTCTAGGGAGGAGCTAGTGAATGAATGTCTACAGAAGGGTACGGAGCTAGTTCAAGCTATCGCGAATGAACTTTTCACCCTACCCTCAACTGAAGACAGAGCTGGTCCTCTAGTGATGTTGCCTCCACCTAAAACTAGATTGCCAAGGGAGAAACATCTTCCAAGGCCTAAGCCTCCTACAAAATGGGAACTTTTTGCTCAAAAAAGAGGTATAAAGAACAGGAAGAAAGACAAGATTGCATATGATGAGCAGACTCATTCATGGAAGCGCCGTCATGGTTATGATCGTGCAAATGATGAAGAGAATATACCCATTATTGAGGCCAAGATGACTGATGAGCCGGGGATGGACCCCTTTGCTGAGAGACGAGCAAAGAAGAATGAACGAGTTGAAAAGCAAGAAAAGAACCGCCTACAGAATCTGAAACAGGCTGCTAAAGTTGGTGCTTTGCCAAGCCACGTTCAACTAGCGGCAACTGCTTTGCCAATAACAGGGACGCAAGCTTCAACAAAGAAAATAACAAAAGATGAGCTTGGAAATGTGGCAGGAATGGCAGCAACAGCGACCGCTAGTGGTGGAAAATTCGACAAGAAGTTGCCCGGCGAAAAGCCTGCAAAGCATGATGGAAAATATCGCAAGTTTTTGCCTGTTGTGGAAGGAACTGGTGTAGGCTCTCGAGAAAGGGAACAAACCGAAAAAGTCCTGAACCGACTAATATCGAAGAATTCACATGAGATACTAAACGTCAATAAGGCTGTCAACATGTACAATGTGAAAAGTGAAAAGAGGCGAAAACGTGATGATAGAAAGCCCTCGTCATCGACATCGAGCAAGTTGAAACCGAATAAGAAACTTCAAAAGAAGTCACCAAAGGGACCATCGAAGAAAGTTAAGACAAAATGAAGTTATCCTGTATAATCGATGGCATTTTTATTAGAGTTCGTGTACTACTCTTATCTACTTTATGGAAGAAATTTTGCATTTGGACTATTTATTGTAGTAAGGATTTCCATTTACAGAATAGCGATTGATTGTCTTTCTCACACATTAGCAAAAGGGAACATGAAGTTTTTAGAGATTGACCAGTGAGTTCCCAACTTGTAGCAATCGCTATGATATTTTTAAGAATACACTAGAAATGATATTGGTGCTATGTGATTTTGTATTCATTTATGATTATGAAATGTAGAACAAATCCAGGGACATGATTAGAAAAAAAAATCTTGTAGTTTGATTGATAA

Coding sequence (CDS)

ATGGAGAACGAACAGCAACTTCTGGTCGACGTCGGTCATCTTCTGGGGTTCAATCCTCACCACCACTTCATCTCTCCGCCGGCCTCTAGGGAGGAGCTAGTGAATGAATGTCTACAGAAGGGTACGGAGCTAGTTCAAGCTATCGCGAATGAACTTTTCACCCTACCCTCAACTGAAGACAGAGCTGGTCCTCTAGTGATGTTGCCTCCACCTAAAACTAGATTGCCAAGGGAGAAACATCTTCCAAGGCCTAAGCCTCCTACAAAATGGGAACTTTTTGCTCAAAAAAGAGGTATAAAGAACAGGAAGAAAGACAAGATTGCATATGATGAGCAGACTCATTCATGGAAGCGCCGTCATGGTTATGATCGTGCAAATGATGAAGAGAATATACCCATTATTGAGGCCAAGATGACTGATGAGCCGGGGATGGACCCCTTTGCTGAGAGACGAGCAAAGAAGAATGAACGAGTTGAAAAGCAAGAAAAGAACCGCCTACAGAATCTGAAACAGGCTGCTAAAGTTGGTGCTTTGCCAAGCCACGTTCAACTAGCGGCAACTGCTTTGCCAATAACAGGGACGCAAGCTTCAACAAAGAAAATAACAAAAGATGAGCTTGGAAATGTGGCAGGAATGGCAGCAACAGCGACCGCTAGTGGTGGAAAATTCGACAAGAAGTTGCCCGGCGAAAAGCCTGCAAAGCATGATGGAAAATATCGCAAGTTTTTGCCTGTTGTGGAAGGAACTGGTGTAGGCTCTCGAGAAAGGGAACAAACCGAAAAAGTCCTGAACCGACTAATATCGAAGAATTCACATGAGATACTAAACGTCAATAAGGCTGTCAACATGTACAATGTGAAAAGTGAAAAGAGGCGAAAACGTGATGATAGAAAGCCCTCGTCATCGACATCGAGCAAGTTGAAACCGAATAAGAAACTTCAAAAGAAGTCACCAAAGGGACCATCGAAGAAAGTTAAGACAAAATGA

Protein sequence

MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTEDRAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRHGYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPSHVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPSSSTSSKLKPNKKLQKKSPKGPSKKVKTK

Homology

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BLAST of Sed0021765 vs. NCBI nr
Match: XP_023515967.1 (ribosome biogenesis regulatory protein homolog isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515969.1 ribosome biogenesis regulatory protein homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 540.8 bits (1392), Expect = 8.1e-150
Identity = 286/329 (86.93%), Postives = 302/329 (91.79%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTED 60
           ME  Q++ VD+GHL+ FNPHHHF SPP+SREELVNECLQKGTELVQAIANELF LPSTED
Sbjct: 1   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRH 120
           R GPLV L  PKT+LPREK LP+PK PTKWELFA+KRGIKNRKKDKI YDEQT +WKRRH
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPS 180
           GYDRANDEENIPIIEAKMTDEPG+DPFA+R+  K +RVEKQE NRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYR 240
           HVQLAATALPITGTQA+TKKITKDELGNVAGMAATATASGGKFDKKLPGEKP KH+GKYR
Sbjct: 181 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPS 300
           KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVK EKRRK DDRKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKREKRRKHDDRKPS 300

Query: 301 SSTSSKLKPNKKLQKKS-PKGPSKKVKTK 329
           SSTSSKLKPNKKLQKK   KG SKK + K
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of Sed0021765 vs. NCBI nr
Match: XP_022961058.1 (ribosome biogenesis regulatory protein homolog [Cucurbita moschata])

HSP 1 Score: 540.4 bits (1391), Expect = 1.1e-149
Identity = 285/329 (86.63%), Postives = 302/329 (91.79%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTED 60
           ME  Q++ VD+GHL+ FNPHHHF SPP+SREELVNECLQKGTELVQAIANELF LPSTED
Sbjct: 1   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRH 120
           R GPLV L  PKT+LPREK LP+PK PTKWELFA+KRGIKNRKKDKI YDEQT +WKRRH
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPS 180
           GYDRANDEENIPIIEAKMTDEPG+DPFA+R+  K +RVEKQE NRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYR 240
           HVQLAATALPITGTQA+TKKITKDELGNVAGMAATATASGGKFDKKLPGEKP KH+GKYR
Sbjct: 181 HVQLAATALPITGTQAATKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPS 300
           KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILN+NKAVNMYNVK EKRRK DDRKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 301 SSTSSKLKPNKKLQKKS-PKGPSKKVKTK 329
           SSTSSKLKPNKKLQKK   KG SKK + K
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of Sed0021765 vs. NCBI nr
Match: KAG6589856.1 (Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 540.0 bits (1390), Expect = 1.4e-149
Identity = 285/329 (86.63%), Postives = 302/329 (91.79%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTED 60
           ME  Q++LVD+GHL+ FNPHHHF SPP+SREELVNECLQKGTELVQAIANELF LPSTED
Sbjct: 1   METPQEVLVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRH 120
           R GPLV L  PKT+LPREK LP+PK PTKWELFA+KRGIKNRKKDKI YDEQT +WKRRH
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPS 180
           GYDRANDEENIPIIEAKMTDEPG+DPFA+R+  K +RVEKQE NRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRKENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYR 240
           HVQLAATALPITGTQA+TKKITKDELGNVAGMAATATASGGKFDKKLPGEKP KH+GKYR
Sbjct: 181 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPS 300
           KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILN+NKAVNMYNVK EKRRK DDRKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 301 SSTSSKLKPNKKLQKKS-PKGPSKKVKTK 329
           SSTSSKLK NKKLQKK   KG SKK + K
Sbjct: 301 SSTSSKLKANKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of Sed0021765 vs. NCBI nr
Match: XP_022144805.1 (ribosome biogenesis regulatory protein homolog [Momordica charantia])

HSP 1 Score: 540.0 bits (1390), Expect = 1.4e-149
Identity = 287/329 (87.23%), Postives = 301/329 (91.49%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTED 60
           MEN+QQL VD+GHL+ FNPHHH  SPP+SREELVNECLQKGTELVQAIANELF LPSTED
Sbjct: 1   MENQQQLQVDLGHLMAFNPHHHLTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRH 120
           R GPLV LPPPKTRLPREKHLP+PKPPTKWELFA+KRGIKNRKKDKIAYDEQT +WKRRH
Sbjct: 61  RDGPLVRLPPPKTRLPREKHLPKPKPPTKWELFAKKRGIKNRKKDKIAYDEQTQTWKRRH 120

Query: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPS 180
           GYDRANDEENIPIIEAKMTDEPGMDPFAER++ K +RVEKQE NRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERQSNKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYR 240
           HVQLAATALPITGTQ + KK+TKDELGNVAGMAATATASGGKFD+KL GEKP KH GKYR
Sbjct: 181 HVQLAATALPITGTQVAPKKMTKDELGNVAGMAATATASGGKFDRKLRGEKPPKHKGKYR 240

Query: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPS 300
           KFLPVVEGTGVGSREREQTE VLNRLISKNSHEILNVNKA+NMYNVK EKRRK D  KPS
Sbjct: 241 KFLPVVEGTGVGSREREQTENVLNRLISKNSHEILNVNKAINMYNVKREKRRKHDG-KPS 300

Query: 301 SSTSSKLKPNKKLQKKS-PKGPSKKVKTK 329
           SSTSSKLKPNKK QKKS  KG S K K K
Sbjct: 301 SSTSSKLKPNKKPQKKSMKKGVSNKGKAK 328

[Close]

BLAST of Sed0021765 vs. NCBI nr
Match: XP_022987784.1 (ribosome biogenesis regulatory protein homolog [Cucurbita maxima])

HSP 1 Score: 538.1 bits (1385), Expect = 5.3e-149
Identity = 284/329 (86.32%), Postives = 301/329 (91.49%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTED 60
           ME  Q++ VD+GHL+ F+PHHHF SPP +REELVNECLQKGTELVQAIANELF LPSTED
Sbjct: 1   METPQEVQVDIGHLMAFDPHHHFTSPPPTREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRH 120
           R GPLV L  PKT+LPREK LP+PK PTKWELFA+KRGIKNRKKDKI YDEQT +WKRRH
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPS 180
           GYDRANDEENIPIIEAKMTDEPG+DPFA+R+  K +RVEKQE NRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYR 240
           HVQLAATALPITGTQA+TKKITKDELGNVAGMAATATASGGKFDKKLPGEKP KH+GKYR
Sbjct: 181 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPS 300
           KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILN+NKAVNMYNVK EKRRK DDRKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 301 SSTSSKLKPNKKLQKKS-PKGPSKKVKTK 329
           SSTSSKLKPNKKLQKK   KG SKK K K
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGKAK 329

[Close]

BLAST of Sed0021765 vs. ExPASy Swiss-Prot
Match: Q9SH88 (Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 GN=At2g37990 PE=2 SV=2)

HSP 1 Score: 392.9 bits (1008), Expect = 3.6e-108
Identity = 211/326 (64.72%), Postives = 253/326 (77.61%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTED 60
           ME EQ   VDVG+LL FNP+H F S P+SR ELV E L +GT+LVQ IAN+LF  PSTE 
Sbjct: 5   METEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTET 64

Query: 61  RAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRH 120
             GP+V LPPP T+LPREKH+PRPKPPTKWE FA K+GI+ RKK+K+ +DEQT+ +KRRH
Sbjct: 65  NDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRH 124

Query: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPS 180
           GYDR ND+ ++PIIEAK +DEPG+DPFA+R   K +RV KQEKNRLQNLK A K GALPS
Sbjct: 125 GYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPS 184

Query: 181 HVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYR 240
           HVQLAAT+LPI+GT+A  KKI KDELG+VAG+AAT+TASGGKFDKKLPGEKP K  GK+ 
Sbjct: 185 HVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHH 244

Query: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPS 300
           K+LPVV G G  + E+EQT  VL+++ SK+SHEILNV KA+NMYNVK EK++        
Sbjct: 245 KYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK-------- 304

Query: 301 SSTSSKLKPNKKLQKKSPKGPSKKVK 327
           S  S KLKP K + KK    P+ K K
Sbjct: 305 SGRSDKLKPKKDITKK----PANKAK 318

[Close]

BLAST of Sed0021765 vs. ExPASy Swiss-Prot
Match: Q9CYH6 (Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-29
Identity = 111/325 (34.15%), Postives = 169/325 (52.00%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGF--NPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPST 60
           +  E +L  D+G+LL    NP         S E  +    +  T+L   + N+L+ LP+ 
Sbjct: 26  VHKELELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQL---LINQLWRLPTE 85

Query: 61  EDRAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKR 120
                 +  LP P TRLPREK LPRP+P T+W+ FA+ +GI+ +KK  + +DE +  W+R
Sbjct: 86  RVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRR 145

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGAL 180
           R GY RA D+    +IE   + +P  D FA+R   K ERV K E NRL+NL +A K+  +
Sbjct: 146 RWGYKRARDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM-QM 205

Query: 181 PSHVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGK 240
           PS     +  L  TG Q      +K+ELG    +A  +TAS G+F ++LP EK  +  GK
Sbjct: 206 PS-----SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGK 265

Query: 241 YRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRK 300
            RKF P+    G  + E++   ++L  + SK     L+V +A N      ++ R+ D  +
Sbjct: 266 KRKFQPLF---GDFAAEKKNQLELLRVMNSKKPR--LDVTRATN------KQMREEDQEE 324

Query: 301 PSSSTSSKLKPNKKLQKKSPKGPSK 324
            +       K  +K  ++ P G  K
Sbjct: 326 AAKRRKMSQKGKRKGGRQGPSGKRK 324

[Close]

BLAST of Sed0021765 vs. ExPASy Swiss-Prot
Match: A1A5P2 (Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=Rrs1 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-29
Identity = 112/325 (34.46%), Postives = 169/325 (52.00%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGF--NPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPST 60
           +  E +L  D+G+LL    NP         S E  +    +  T+L   + N+L+ LP+ 
Sbjct: 26  VHKELELEFDLGNLLASDRNPPTVLRQAGPSPEAELRALARDNTQL---LVNQLWQLPTE 85

Query: 61  EDRAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKR 120
                 +  LP P TRLPREK LPRP+P T+W+ FA+ +GI+ +KK  + +DE +  W+R
Sbjct: 86  RVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRR 145

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGAL 180
           R GY RA D+    +IE   + +P  D FA+R   K ERV K E NRL+NL +A K+  +
Sbjct: 146 RWGYKRARDDTKEWLIEVPGSADPMEDQFAKRIRAKKERVAKNELNRLRNLARAHKM-QM 205

Query: 181 PSHVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGK 240
           PS     +  L  TG Q      +K+ELG    +A  +TAS G+F ++LP EK  +  GK
Sbjct: 206 PS-----SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGK 265

Query: 241 YRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRK 300
            RKF P+    G  + E++   ++L  + SK     L+V +A N      ++ R+ D  +
Sbjct: 266 KRKFQPLF---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATN------KQMREEDQEE 324

Query: 301 PSSSTSSKLKPNKKLQKKSPKGPSK 324
            +       K  KK  ++ P G  K
Sbjct: 326 AAKRRKMSQKGKKKGGRQGPSGRRK 324

[Close]

BLAST of Sed0021765 vs. ExPASy Swiss-Prot
Match: Q15050 (Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 PE=1 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 9.6e-29
Identity = 112/325 (34.46%), Postives = 168/325 (51.69%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGF--NPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPST 60
           +  E +L  D+G+LL    NP         + E  +    +  T+L   + N+L+ LP+ 
Sbjct: 26  VHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQL---LINQLWQLPTE 85

Query: 61  EDRAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKR 120
                 +  LP P TRLPREK LPRP+P T+W+ FA+ +GI+ +KK  + +DE +  W+R
Sbjct: 86  RVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRR 145

Query: 121 RHGYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGAL 180
           R GY RA D+    +IE     +P  D FA+R   K ERV K E NRL+NL +A K+  L
Sbjct: 146 RWGYQRARDDTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QL 205

Query: 181 PSHVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGK 240
           PS     A  L  TG Q      +K+ELG    +A  +TAS G+F ++LP EK  +  GK
Sbjct: 206 PS-----AAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGK 265

Query: 241 YRKFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRK 300
            RKF P+    G  + E++   ++L  + SK     L+V +A N      ++ R+ D  +
Sbjct: 266 KRKFQPLF---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATN------KQMREEDQEE 324

Query: 301 PSSSTSSKLKPNKKLQKKSPKGPSK 324
            +       K  +K  ++ P G  K
Sbjct: 326 AAKRRKMSQKGKRKGGRQGPGGKRK 324

[Close]

BLAST of Sed0021765 vs. ExPASy Swiss-Prot
Match: Q869Q2 (Ribosome biogenesis regulatory protein homolog OS=Dictyostelium discoideum OX=44689 GN=rrs1 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.2e-28
Identity = 100/309 (32.36%), Postives = 162/309 (52.43%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQK-GTELVQAIANELFTLPSTE 60
           ++ E  LL D+G+L  F+   H        +   NE + K   + VQ + + LF LP  E
Sbjct: 21  IDGEDTLLYDLGNLTAFD---HSSLNKTEYKSNPNEYINKLSRDNVQLLISRLFQLPIKE 80

Query: 61  DRAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRR 120
              G L +LP   T +PRE+ LP  KP T+WE FA+ +GIK +KK  + +D++   ++  
Sbjct: 81  IEEGSLALLPRCTTPIPRERSLPTSKPKTRWEAFAEIKGIKKKKKSSMEWDKEHEEYRPT 140

Query: 121 HGYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALP 180
            GY +AND  N   + A+  D+ G DPF +   +KN+RV KQ+K   +N  +A       
Sbjct: 141 FGYKKANDVANDWAMLARPDDKVGEDPFKKLEDEKNDRVSKQKKREQRNFDEA------- 200

Query: 181 SHVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKY 240
           S  Q++     ++  +    +I K ++  V  +A  +TAS GKFDK++  EK A   GK 
Sbjct: 201 SMRQMSNVGKTLSFDKEHRGQI-KSDMEKVFDVAKLSTASLGKFDKRVENEKDAPKRGKK 260

Query: 241 RKFLPVVEGTGVG--SREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDR 300
           +     + G G G  ++E E   K+++R+  K +  +LNV+KA   + VK+E+R     +
Sbjct: 261 K-----LAGLGAGDVAQESENNSKLIDRMFKKEN--VLNVDKATRQF-VKAEERENYSKK 310

Query: 301 KPSSSTSSK 307
           + S    +K
Sbjct: 321 RSSGGKDNK 310

[Close]

BLAST of Sed0021765 vs. ExPASy TrEMBL
Match: A0A6J1HAS5 (Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111461680 PE=3 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 5.1e-150
Identity = 285/329 (86.63%), Postives = 302/329 (91.79%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTED 60
           ME  Q++ VD+GHL+ FNPHHHF SPP+SREELVNECLQKGTELVQAIANELF LPSTED
Sbjct: 1   METPQEVQVDIGHLMAFNPHHHFTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRH 120
           R GPLV L  PKT+LPREK LP+PK PTKWELFA+KRGIKNRKKDKI YDEQT +WKRRH
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPS 180
           GYDRANDEENIPIIEAKMTDEPG+DPFA+R+  K +RVEKQE NRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYR 240
           HVQLAATALPITGTQA+TKKITKDELGNVAGMAATATASGGKFDKKLPGEKP KH+GKYR
Sbjct: 181 HVQLAATALPITGTQAATKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPS 300
           KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILN+NKAVNMYNVK EKRRK DDRKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 301 SSTSSKLKPNKKLQKKS-PKGPSKKVKTK 329
           SSTSSKLKPNKKLQKK   KG SKK + K
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGQAK 329

[Close]

BLAST of Sed0021765 vs. ExPASy TrEMBL
Match: A0A6J1CSP0 (Ribosome biogenesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC111014399 PE=3 SV=1)

HSP 1 Score: 540.0 bits (1390), Expect = 6.7e-150
Identity = 287/329 (87.23%), Postives = 301/329 (91.49%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTED 60
           MEN+QQL VD+GHL+ FNPHHH  SPP+SREELVNECLQKGTELVQAIANELF LPSTED
Sbjct: 1   MENQQQLQVDLGHLMAFNPHHHLTSPPSSREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRH 120
           R GPLV LPPPKTRLPREKHLP+PKPPTKWELFA+KRGIKNRKKDKIAYDEQT +WKRRH
Sbjct: 61  RDGPLVRLPPPKTRLPREKHLPKPKPPTKWELFAKKRGIKNRKKDKIAYDEQTQTWKRRH 120

Query: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPS 180
           GYDRANDEENIPIIEAKMTDEPGMDPFAER++ K +RVEKQE NRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERQSNKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYR 240
           HVQLAATALPITGTQ + KK+TKDELGNVAGMAATATASGGKFD+KL GEKP KH GKYR
Sbjct: 181 HVQLAATALPITGTQVAPKKMTKDELGNVAGMAATATASGGKFDRKLRGEKPPKHKGKYR 240

Query: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPS 300
           KFLPVVEGTGVGSREREQTE VLNRLISKNSHEILNVNKA+NMYNVK EKRRK D  KPS
Sbjct: 241 KFLPVVEGTGVGSREREQTENVLNRLISKNSHEILNVNKAINMYNVKREKRRKHDG-KPS 300

Query: 301 SSTSSKLKPNKKLQKKS-PKGPSKKVKTK 329
           SSTSSKLKPNKK QKKS  KG S K K K
Sbjct: 301 SSTSSKLKPNKKPQKKSMKKGVSNKGKAK 328

[Close]

BLAST of Sed0021765 vs. ExPASy TrEMBL
Match: A0A6J1JJT9 (Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC111485227 PE=3 SV=1)

HSP 1 Score: 538.1 bits (1385), Expect = 2.5e-149
Identity = 284/329 (86.32%), Postives = 301/329 (91.49%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTED 60
           ME  Q++ VD+GHL+ F+PHHHF SPP +REELVNECLQKGTELVQAIANELF LPSTED
Sbjct: 1   METPQEVQVDIGHLMAFDPHHHFTSPPPTREELVNECLQKGTELVQAIANELFILPSTED 60

Query: 61  RAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRH 120
           R GPLV L  PKT+LPREK LP+PK PTKWELFA+KRGIKNRKKDKI YDEQT +WKRRH
Sbjct: 61  RDGPLVKLSQPKTKLPREKPLPKPKAPTKWELFAKKRGIKNRKKDKILYDEQTQTWKRRH 120

Query: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPS 180
           GYDRANDEENIPIIEAKMTDEPG+DPFA+R+  K +RVEKQE NRLQNLKQAAKVGALPS
Sbjct: 121 GYDRANDEENIPIIEAKMTDEPGVDPFAKRQENKRKRVEKQENNRLQNLKQAAKVGALPS 180

Query: 181 HVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYR 240
           HVQLAATALPITGTQA+TKKITKDELGNVAGMAATATASGGKFDKKLPGEKP KH+GKYR
Sbjct: 181 HVQLAATALPITGTQATTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPPKHEGKYR 240

Query: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPS 300
           KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILN+NKAVNMYNVK EKRRK DDRKPS
Sbjct: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNINKAVNMYNVKREKRRKHDDRKPS 300

Query: 301 SSTSSKLKPNKKLQKKS-PKGPSKKVKTK 329
           SSTSSKLKPNKKLQKK   KG SKK K K
Sbjct: 301 SSTSSKLKPNKKLQKKPLKKGSSKKGKAK 329

[Close]

BLAST of Sed0021765 vs. ExPASy TrEMBL
Match: A0A0A0LZY0 (Ribosome biogenesis regulatory protein OS=Cucumis sativus OX=3659 GN=Csa_1G605610 PE=3 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 9.1e-139
Identity = 267/329 (81.16%), Postives = 292/329 (88.75%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTED 60
           +EN+    +D+GHL+ FNPHH F S P+SRE+LV+ECLQKGTELVQ+IAN+LF LPSTED
Sbjct: 3   IENQHPFQIDLGHLMAFNPHHQFPSLPSSREDLVSECLQKGTELVQSIANDLFNLPSTED 62

Query: 61  RAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRH 120
           R GPLV LPPP TRLPREK LP+PKPPTKWELFAQK+GIKNRKKDK  YDEQTH+WKRRH
Sbjct: 63  RDGPLVRLPPPTTRLPREKPLPKPKPPTKWELFAQKKGIKNRKKDKRVYDEQTHTWKRRH 122

Query: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPS 180
           GYDRANDE+NIPIIEAKMTDE G DPFA RRA K +RVEKQEKNRLQNLKQAAKVGALPS
Sbjct: 123 GYDRANDEDNIPIIEAKMTDESGEDPFAARRADKKKRVEKQEKNRLQNLKQAAKVGALPS 182

Query: 181 HVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYR 240
           H+QLAATALPITGTQA+ KKITKDELGNVAGMAAT+TASGGKFDKK  GEKPAKH GKYR
Sbjct: 183 HIQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKFAGEKPAKHQGKYR 242

Query: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPS 300
           KFLPVVEGTG+GSREREQTEKVL+RLISKNSHEILNVNKAVNMYNVK EK+++   +  S
Sbjct: 243 KFLPVVEGTGIGSREREQTEKVLSRLISKNSHEILNVNKAVNMYNVKKEKKQRNQGK--S 302

Query: 301 SSTSSKLKPNKKLQKKS-PKGPSKKVKTK 329
           SS SSKLKPNKKLQKK   KG SK+ K K
Sbjct: 303 SSMSSKLKPNKKLQKKPLKKGSSKQGKAK 329

[Close]

BLAST of Sed0021765 vs. ExPASy TrEMBL
Match: A0A6J1HW20 (Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC111467179 PE=3 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 5.9e-138
Identity = 265/329 (80.55%), Postives = 290/329 (88.15%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTED 60
           MEN+Q   +D+G+L+ FNPHH F S  +SRE+LV+ECLQKG EL Q IAN+LF LPSTED
Sbjct: 3   MENQQPFQIDLGNLMAFNPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTED 62

Query: 61  RAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRH 120
           R GPLV LPPP TRLPREK LP+PKPPTKWELFA+KRGIKNRKKDKI YD+QT SWKRRH
Sbjct: 63  RDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRH 122

Query: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPS 180
           GYDRANDEENIPIIEAKMTDEPG+DPFA RRA K  RVEKQE+N+LQNLKQAAKVGALPS
Sbjct: 123 GYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGALPS 182

Query: 181 HVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYR 240
           HVQLAATALPITGTQA+ KKITKDELGNVAGMAAT+TASGGKFDKKL GEKPAKH GKYR
Sbjct: 183 HVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYR 242

Query: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPS 300
           KFLPVVEGTG+GS+EREQTEKVLNRLISKNSHEILN+NKAVNMYNVK EK+++    K S
Sbjct: 243 KFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGKSS 302

Query: 301 SSTSSKLKPNKKLQKKS-PKGPSKKVKTK 329
           S +S+KLKPNKKLQKK   KG SK  K K
Sbjct: 303 SMSSNKLKPNKKLQKKPLKKGSSKNGKAK 331

[Close]

BLAST of Sed0021765 vs. TAIR 10
Match: AT2G37990.1 (ribosome biogenesis regulatory protein (RRS1) family protein )

HSP 1 Score: 392.9 bits (1008), Expect = 2.5e-109
Identity = 211/326 (64.72%), Postives = 253/326 (77.61%), Query Frame = 0


Query: 1   MENEQQLLVDVGHLLGFNPHHHFISPPASREELVNECLQKGTELVQAIANELFTLPSTED 60
           ME EQ   VDVG+LL FNP+H F S P+SR ELV E L +GT+LVQ IAN+LF  PSTE 
Sbjct: 5   METEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTET 64

Query: 61  RAGPLVMLPPPKTRLPREKHLPRPKPPTKWELFAQKRGIKNRKKDKIAYDEQTHSWKRRH 120
             GP+V LPPP T+LPREKH+PRPKPPTKWE FA K+GI+ RKK+K+ +DEQT+ +KRRH
Sbjct: 65  NDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRH 124

Query: 121 GYDRANDEENIPIIEAKMTDEPGMDPFAERRAKKNERVEKQEKNRLQNLKQAAKVGALPS 180
           GYDR ND+ ++PIIEAK +DEPG+DPFA+R   K +RV KQEKNRLQNLK A K GALPS
Sbjct: 125 GYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPS 184

Query: 181 HVQLAATALPITGTQASTKKITKDELGNVAGMAATATASGGKFDKKLPGEKPAKHDGKYR 240
           HVQLAAT+LPI+GT+A  KKI KDELG+VAG+AAT+TASGGKFDKKLPGEKP K  GK+ 
Sbjct: 185 HVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHH 244

Query: 241 KFLPVVEGTGVGSREREQTEKVLNRLISKNSHEILNVNKAVNMYNVKSEKRRKRDDRKPS 300
           K+LPVV G G  + E+EQT  VL+++ SK+SHEILNV KA+NMYNVK EK++        
Sbjct: 245 KYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK-------- 304

Query: 301 SSTSSKLKPNKKLQKKSPKGPSKKVK 327
           S  S KLKP K + KK    P+ K K
Sbjct: 305 SGRSDKLKPKKDITKK----PANKAK 318

The following BLAST results are available for this feature:

BLAST of Sed0021765 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515967.1	8.1e-150	86.93	ribosome biogenesis regulatory protein homolog isoform X1 [Cucurbita pepo subsp....	[more]
XP_022961058.1	1.1e-149	86.63	ribosome biogenesis regulatory protein homolog [Cucurbita moschata]	[more]
KAG6589856.1	1.4e-149	86.63	Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosp...	[more]
XP_022144805.1	1.4e-149	87.23	ribosome biogenesis regulatory protein homolog [Momordica charantia]	[more]
XP_022987784.1	5.3e-149	86.32	ribosome biogenesis regulatory protein homolog [Cucurbita maxima]	[more]

BLAST of Sed0021765 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SH88	3.6e-108	64.72	Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9CYH6	2.5e-29	34.15	Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 ...	[more]
A1A5P2	2.5e-29	34.46	Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=...	[more]
Q15050	9.6e-29	34.46	Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 P...	[more]
Q869Q2	6.2e-28	32.36	Ribosome biogenesis regulatory protein homolog OS=Dictyostelium discoideum OX=44...	[more]

BLAST of Sed0021765 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAS5	5.1e-150	86.63	Ribosome biogenesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1CSP0	6.7e-150	87.23	Ribosome biogenesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1JJT9	2.5e-149	86.32	Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC1114852...	[more]
A0A0A0LZY0	9.1e-139	81.16	Ribosome biogenesis regulatory protein OS=Cucumis sativus OX=3659 GN=Csa_1G60561...	[more]
A0A6J1HW20	5.9e-138	80.55	Ribosome biogenesis regulatory protein OS=Cucurbita maxima OX=3661 GN=LOC1114671...	[more]

BLAST of Sed0021765 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37990.1	2.5e-109	64.72	ribosome biogenesis regulatory protein (RRS1) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 152..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 283..328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 309..328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 285..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..88
None	No IPR available	PANTHER	PTHR17602:SF5	RIBOSOME BIOGENESIS REGULATORY PROTEIN	coord: 1..319
IPR007023	Ribosomal biogenesis regulatory protein	PFAM	PF04939	RRS1	coord: 9..169 e-value: 9.7E-51 score: 171.9
IPR007023	Ribosomal biogenesis regulatory protein	PANTHER	PTHR17602	RIBOSOME BIOGENESIS REGULATORY PROTEIN	coord: 1..319

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021765.1	Sed0021765.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0000055	ribosomal large subunit export from nucleus
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0005634	nucleus