Sed0021707 (gene) Chayote v1

Overview


Name	Sed0021707
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CCT domain-containing protein
Location	LG05: 42304759 .. 42306718 (-)
RNA-Seq Expression	Sed0021707
Synteny	Sed0021707

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACATTTGGGTTTTAAAAAATACAGTTTTTTTTTCAGACCCACAAAAAAAAATCCTCTTTTTGTTTGAGATATTTTCTAATGGCTTCATTTTCTCATAATTTGCACTCTGATCATCTTCTTTATCCCAACAATAATTTTTGTGATGTTCAGAGCCAACTAATGGGGCCTGGAGACACTGCACTTTGTGGCATTAGAAACAATTATCATAATCATCTTGATTTGGCTGTTGGGCAAGAAACTTTCATCCCTTCCTTCGACCGGACGGTGCCGCCCGAGCAGTCGTCCGATGCCTTATCGTCGCTTCTTGCAATGCCGTGTCCCGACTTCGGTGGGCCGGTCTCTGATATGACGGTCCCATCGTTGCCCGAGTTTAACATGGGTTTGTATGGTATCCACAGCTTGATTGGCAGCCAGCCAACCGTGCCCGGTCCGTGTGACTACGACGAGGAGTTCTTCGGCTTCATGCCTGATTTGAAGCCCCTTTATCGCTATAATTGGGTAATATATCTCTTAATCTTATAGGTTAAGTCATGTTTAACTCTTCTCGTTTAAAAATTTAGCTTTAGTATAAAAAAAAAACCGTTAGTAAAAGATTAAAAAATATAACTTTCTGTTGTGTTATGATACTAAGTGGAAAAGCTTAGTCAAATGATTTATATACATGAACTTTTCTGATGCAATATTTAATAAAAGGGTAAAAATAAATGATTGTTAATAAAAGGATGTGAATGTATGATTTTTGTTATGATATTAATTAAAAGAGTATAAATAAATAAAGATTAATGAAATGGTATGATATGATATGCAGGGAAGTGAAAGTAATTACGAAATAATGCATGAAATGGAAGAGACAAATAATATTAAGGTGGTAAGTCGCTACTCACAACAAGAAAGGAAAGAAAGGATTGTTAGATATTTAAAAAAGAGAAATCAGAGGAATTTCAACAAAACCATCAAGGTCCAATTAATTCTCCCTTTCTTTTCCTAATTCATATTATTATTATTATTGGTTCTCAAAATCTTTAAGGCCTAAATTATAAATCTTGTCTTATGATTAGAAGAAAGTTAAAATTTAGTGTTCATAATTTCAAAAATTATAATTTAGTTCTTATGATTTGAAAAAGTTAACATTTAATTTTTATAACTTAATAAAAATATAAAATATAGTCTTTTTGGTTCAAAATGGCTAGCTAATTAAATATGTAGAAAATAGGTATCACACTTAAATGATATAATTTTTTGGATTTTATCAAATCAAAATTATAAGACTAAATTTTTTTTTTGTTTCAAATTATACTAATTATATTCCAGTTTTTGAAATTATGAGTACTAAACTTTAACTTTTTTCTGATCATAGCATCAAATTTATAATCTTTTTTATTACAATTTTTTTTTAAAGCCTAATGTTTTTTTTTTTTGTTAATAATAGTATGCATGTCGAAAAAGCTTAGCAGACAGAAGAACTCGAGTACGAGGAAGATTTGCTCGCAACAACATTGAACTTTGCGACACTCAAATCCCTCTCAAAACCAACCAATTAACCACCCCAAATCATAATCTAAATCAAACGGTAAATTTTTTTTTTTTTTTTTTTCAATTTTCTTCTATGTTTTAGTTCATAAAAATAAGATATTTCCATGTTTTTTTGTTCATAAAGACCGGACTTTTTTTTTTTTTTTTTTTTTAAAGTTAAAATAATTAGGGAGGGGGATTGAACCCATGACCTTTTAGTTATTAAATGTATACAGACGTTGCTGAGTTACTTCTCCTAACTTTTTTGTTTGTTTGTTTTTTTTTTGGTACAGAACAATGAGGAAGAAGAGAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTGATAATTATTACTAAAATGTAGAATTTGATTTCCACCTTTGTACCTTAAACTAATTTACTATTAAAAATGACTTTTTGGC

mRNA sequence

AAACATTTGGGTTTTAAAAAATACAGTTTTTTTTTCAGACCCACAAAAAAAAATCCTCTTTTTGTTTGAGATATTTTCTAATGGCTTCATTTTCTCATAATTTGCACTCTGATCATCTTCTTTATCCCAACAATAATTTTTGTGATGTTCAGAGCCAACTAATGGGGCCTGGAGACACTGCACTTTGTGGCATTAGAAACAATTATCATAATCATCTTGATTTGGCTGTTGGGCAAGAAACTTTCATCCCTTCCTTCGACCGGACGGTGCCGCCCGAGCAGTCGTCCGATGCCTTATCGTCGCTTCTTGCAATGCCGTGTCCCGACTTCGGTGGGCCGGTCTCTGATATGACGGTCCCATCGTTGCCCGAGTTTAACATGGGTTTGTATGGTATCCACAGCTTGATTGGCAGCCAGCCAACCGTGCCCGGTCCGTGTGACTACGACGAGGAGTTCTTCGGCTTCATGCCTGATTTGAAGCCCCTTTATCGCTATAATTGGGGAAGTGAAAGTAATTACGAAATAATGCATGAAATGGAAGAGACAAATAATATTAAGGTGGTAAGTCGCTACTCACAACAAGAAAGGAAAGAAAGGATTGTTAGATATTTAAAAAAGAGAAATCAGAGGAATTTCAACAAAACCATCAAGTATGCATGTCGAAAAAGCTTAGCAGACAGAAGAACTCGAGTACGAGGAAGATTTGCTCGCAACAACATTGAACTTTGCGACACTCAAATCCCTCTCAAAACCAACCAATTAACCACCCCAAATCATAATCTAAATCAAACGAACAATGAGGAAGAAGAGAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTGATAATTATTACTAAAATGTAGAATTTGATTTCCACCTTTGTACCTTAAACTAATTTACTATTAAAAATGACTTTTTGGC

Coding sequence (CDS)

ATGGCTTCATTTTCTCATAATTTGCACTCTGATCATCTTCTTTATCCCAACAATAATTTTTGTGATGTTCAGAGCCAACTAATGGGGCCTGGAGACACTGCACTTTGTGGCATTAGAAACAATTATCATAATCATCTTGATTTGGCTGTTGGGCAAGAAACTTTCATCCCTTCCTTCGACCGGACGGTGCCGCCCGAGCAGTCGTCCGATGCCTTATCGTCGCTTCTTGCAATGCCGTGTCCCGACTTCGGTGGGCCGGTCTCTGATATGACGGTCCCATCGTTGCCCGAGTTTAACATGGGTTTGTATGGTATCCACAGCTTGATTGGCAGCCAGCCAACCGTGCCCGGTCCGTGTGACTACGACGAGGAGTTCTTCGGCTTCATGCCTGATTTGAAGCCCCTTTATCGCTATAATTGGGGAAGTGAAAGTAATTACGAAATAATGCATGAAATGGAAGAGACAAATAATATTAAGGTGGTAAGTCGCTACTCACAACAAGAAAGGAAAGAAAGGATTGTTAGATATTTAAAAAAGAGAAATCAGAGGAATTTCAACAAAACCATCAAGTATGCATGTCGAAAAAGCTTAGCAGACAGAAGAACTCGAGTACGAGGAAGATTTGCTCGCAACAACATTGAACTTTGCGACACTCAAATCCCTCTCAAAACCAACCAATTAACCACCCCAAATCATAATCTAAATCAAACGAACAATGAGGAAGAAGAGAGCTGGCTGCAAGAATTGGCAGCAAGTTTAATGTATTTACCTTATGTGACAAATTGA

Protein sequence

MASFSHNLHSDHLLYPNNNFCDVQSQLMGPGDTALCGIRNNYHNHLDLAVGQETFIPSFDRTVPPEQSSDALSSLLAMPCPDFGGPVSDMTVPSLPEFNMGLYGIHSLIGSQPTVPGPCDYDEEFFGFMPDLKPLYRYNWGSESNYEIMHEMEETNNIKVVSRYSQQERKERIVRYLKKRNQRNFNKTIKYACRKSLADRRTRVRGRFARNNIELCDTQIPLKTNQLTTPNHNLNQTNNEEEESWLQELAASLMYLPYVTN

Homology

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BLAST of Sed0021707 vs. NCBI nr
Match: XP_004150045.2 (uncharacterized protein LOC101221095 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 3.6e-92
Identity = 188/271 (69.37%), Postives = 215/271 (79.34%), Query Frame = 0


Query: 1   MASFSHNLHSDHLLYPNNNFCDVQSQLMGPGDTALCGIRNNYHN-HLDLAVG-QETFIPS 60
           MASF HN + D L YP NNF D+Q+ LM  GDT +CGIRNN++N ++DL V  +ETF+ S
Sbjct: 1   MASFPHNFYPD-LPYP-NNFSDLQTLLMAAGDTGMCGIRNNHNNDNIDLFVSREETFVSS 60

Query: 61  FDRTVPPEQSSD--ALSSLLAMPCPDFGGPVSDMTVPSLPEFNMGLYGIHSLIGSQPTVP 120
           FD+TV P+QSS   +LS  L M  PD  GPVSDMTVPSLPEFNM  Y IHSLI  QP VP
Sbjct: 61  FDQTVSPDQSSSDTSLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLINCQPQVP 120

Query: 121 GPCDYDEEFFGFMPDLKPLYRYNWGSESNYEIMHEMEETNNIKVVSRYSQQERKERIVRY 180
           G C+Y ++  GF+P+LKPLYR  WG++S YEI H +EET NIKV SRYS++ERKERIVRY
Sbjct: 121 GTCNYGDQLIGFVPELKPLYRDTWGNQSRYEI-HAVEET-NIKVASRYSEEERKERIVRY 180

Query: 181 LKKRNQRNFNKTIKYACRKSLADRRTRVRGRFARNNIELCDT--QIPLKTNQLTTPNHNL 240
           LKKRNQRNFNKTIKYACRK+LADRRTRVRGRFARNN ELCD   +IPLKTNQ +TPNHNL
Sbjct: 181 LKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDNDHEIPLKTNQFSTPNHNL 240

Query: 241 ----NQTNNEEEESWLQELAASLMYLPYVTN 262
               +QTN EEEESWLQELA SLMYLPYV N
Sbjct: 241 IKQIDQTNKEEEESWLQELATSLMYLPYVAN 267

[Close]

BLAST of Sed0021707 vs. NCBI nr
Match: XP_038902616.1 (zinc finger protein CONSTANS-LIKE 1-like [Benincasa hispida])

HSP 1 Score: 348.2 bits (892), Expect = 6.1e-92
Identity = 192/269 (71.38%), Postives = 216/269 (80.30%), Query Frame = 0


Query: 1   MASFSHNLHSDHLLYPNNNFCDVQSQLMGPGDTALCGIRNNYHNHLDLAVGQETFIPSFD 60
           MASF H  +SD LLYP NN  D+QS LM  GDT +C +RNN +N++D ++ +ETF+PSFD
Sbjct: 1   MASFPH-FYSD-LLYP-NNLSDLQSLLMAVGDTGMCDLRNNNNNNIDFSLREETFVPSFD 60

Query: 61  RTVPPEQ-SSDALSSLLAMPCPDFGGPVSDMTVPSLPEFN-MGLYGIHSLI-GSQPTVPG 120
           +TV PEQ SSD LS LL M  PD  G VSDM VPSLPEFN M  Y IHSLI  +QP VPG
Sbjct: 61  QTVSPEQSSSDTLSPLLTMQYPDLYGSVSDMAVPSLPEFNTMSTYDIHSLISNNQPQVPG 120

Query: 121 PCDYDEEFFGFMPDLKPLYRYNWGSESNYEIMHEMEETNNIKVVSRYSQQERKERIVRYL 180
            C+Y EEF GF+P+LKPLYR  WGS+S YE M  +EET NIKV SRYS++ERKERIVRYL
Sbjct: 121 TCNYSEEFLGFVPELKPLYRDTWGSQSRYE-MQGVEET-NIKVASRYSEEERKERIVRYL 180

Query: 181 KKRNQRNFNKTIKYACRKSLADRRTRVRGRFARNNIELCDT-QIPLKTNQLTTPNHNL-- 240
           KKRNQRNFNKTIKYACRK+LADRRTRVRGRFARNN ELCDT +IPLKTN+LTTP HNL  
Sbjct: 181 KKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDTDEIPLKTNKLTTPTHNLIK 240

Query: 241 --NQTNNEEEESWLQELAASLMYLPYVTN 262
             +Q N EEEESWLQELAASLMYLPYVTN
Sbjct: 241 QRDQMNKEEEESWLQELAASLMYLPYVTN 264

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BLAST of Sed0021707 vs. NCBI nr
Match: KAE8646876.1 (hypothetical protein Csa_021098 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 5.4e-88
Identity = 182/264 (68.94%), Postives = 209/264 (79.17%), Query Frame = 0


Query: 1   MASFSHNLHSDHLLYPNNNFCDVQSQLMGPGDTALCGIRNNYHN-HLDLAVG-QETFIPS 60
           MASF HN + D L YP NNF D+Q+ LM  GDT +CGIRNN++N ++DL V  +ETF+ S
Sbjct: 1   MASFPHNFYPD-LPYP-NNFSDLQTLLMAAGDTGMCGIRNNHNNDNIDLFVSREETFVSS 60

Query: 61  FDRTVPPEQSSD--ALSSLLAMPCPDFGGPVSDMTVPSLPEFNMGLYGIHSLIGSQPTVP 120
           FD+TV P+QSS   +LS  L M  PD  GPVSDMTVPSLPEFNM  Y IHSLI  QP VP
Sbjct: 61  FDQTVSPDQSSSDTSLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLINCQPQVP 120

Query: 121 GPCDYDEEFFGFMPDLKPLYRYNWGSESNYEIMHEMEETNNIKVVSRYSQQERKERIVRY 180
           G C+Y ++  GF+P+LKPLYR  WG++S YEI H +EET NIKV SRYS++ERKERIVRY
Sbjct: 121 GTCNYGDQLIGFVPELKPLYRDTWGNQSRYEI-HAVEET-NIKVASRYSEEERKERIVRY 180

Query: 181 LKKRNQRNFNKTIKYACRKSLADRRTRVRGRFARNNIELCDT--QIPLKTNQLTTPNHNL 240
           LKKRNQRNFNKTIKYACRK+LADRRTRVRGRFARNN ELCD   +IPLKTNQ +TPNHNL
Sbjct: 181 LKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDNDHEIPLKTNQFSTPNHNL 240

Query: 241 ----NQTNNEEEESWLQELAASLM 255
               +QTN EEEESWLQELA SLM
Sbjct: 241 IKQIDQTNKEEEESWLQELATSLM 260

[Close]

BLAST of Sed0021707 vs. NCBI nr
Match: XP_023511907.1 (zinc finger protein CONSTANS-LIKE 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.0 bits (837), Expect = 1.5e-85
Identity = 181/266 (68.05%), Postives = 207/266 (77.82%), Query Frame = 0


Query: 1   MASFSHNLHSDHLLYPNNNFCDVQSQLMGPGDTALCGIRN----NYHNHLDLAVGQETFI 60
           MASF H  +SD LLYP NNF D+Q+ LM  GD  + GIRN    N +N++DL  G+ETF+
Sbjct: 1   MASFPH-FYSD-LLYP-NNFSDLQTLLMAAGDPGIGGIRNNNDDNNNNNIDLPRGEETFV 60

Query: 61  PSFDRTVPPEQSSDALSSLLAMPCPDFGGPVSDMTVPSLPEFNMGLYGIHSLIGSQPTVP 120
           P+FDR    E  SD  S LL MP P       D+T+PS PEFN G+YGIHS+IG+QP VP
Sbjct: 61  PAFDRMASFE--SDTQSPLLTMPYP-------DLTLPSSPEFNKGMYGIHSVIGNQPQVP 120

Query: 121 GPCDYDEEFFGFMPDLKPLYRYNWGSESNYEIMHEMEETNNIKVVSRYSQQERKERIVRY 180
           G C+YD+E  GF+PDLKP YR  WG +S+YE MH +EET NIKV SRYS++ERKERIVRY
Sbjct: 121 GSCNYDDELLGFVPDLKPFYRNIWGPQSSYE-MHGVEET-NIKVASRYSEEERKERIVRY 180

Query: 181 LKKRNQRNFNKTIKYACRKSLADRRTRVRGRFARNNIELCDTQIPLKTNQLTTPNHNLNQ 240
           LKKRNQRNFNKTIKYACRK+LADRRTRVRGRFARNN ELCDT+IPLK N LT P+H  NQ
Sbjct: 181 LKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDTEIPLKINHLTAPSH--NQ 240

Query: 241 TN-NEEEESWLQELAASLMYLPYVTN 262
           TN  EEEESWLQELAASLMYLPYVTN
Sbjct: 241 TNKEEEEESWLQELAASLMYLPYVTN 250

[Close]

BLAST of Sed0021707 vs. NCBI nr
Match: KAG6570585.1 (Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-84
Identity = 178/264 (67.42%), Postives = 206/264 (78.03%), Query Frame = 0


Query: 1   MASFSHNLHSDHLLYPNNNFCDVQSQLMGPGDTALCGIRN---NYHNHLDLAVGQETFIP 60
           MASF H  +SD LLYP NNF D+QS LM  GD  + GIRN   N +N+++L  G+ETF P
Sbjct: 1   MASFPH-FYSD-LLYP-NNFSDLQSLLMVAGDPGIGGIRNNDDNNNNNINLPRGEETFDP 60

Query: 61  SFDRTVPPEQSSDALSSLLAMPCPDFGGPVSDMTVPSLPEFNMGLYGIHSLIGSQPTVPG 120
           + D+ V  E  SD  S LL MP P       D+TVPS PEFN G+YGIHS+IG+QP VPG
Sbjct: 61  TLDQMVSFE--SDTQSPLLTMPYP-------DLTVPSSPEFNKGMYGIHSVIGNQPRVPG 120

Query: 121 PCDYDEEFFGFMPDLKPLYRYNWGSESNYEIMHEMEETNNIKVVSRYSQQERKERIVRYL 180
            C+YD+E  GF+PDLKP YR  WG++S+YE +H +EET NIKV SRYS++ERKERIVRYL
Sbjct: 121 SCNYDDELLGFVPDLKPFYRNIWGTQSSYE-LHGVEET-NIKVASRYSEEERKERIVRYL 180

Query: 181 KKRNQRNFNKTIKYACRKSLADRRTRVRGRFARNNIELCDTQIPLKTNQLTTPNHNLNQT 240
           KKRNQRNFNKTIKYACRK+LADRRTRVRGRFARNN ELCDT+IPLKTN LT P+HN  + 
Sbjct: 181 KKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDTEIPLKTNHLTAPSHN-QKN 240

Query: 241 NNEEEESWLQELAASLMYLPYVTN 262
             EEEESWLQELAASLMYLPYVTN
Sbjct: 241 KEEEEESWLQELAASLMYLPYVTN 249

[Close]

BLAST of Sed0021707 vs. ExPASy Swiss-Prot
Match: Q39057 (Zinc finger protein CONSTANS OS=Arabidopsis thaliana OX=3702 GN=CO PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.5e-05
Identity = 27/67 (40.30%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 148 IMHEMEETNNIKVVSRYSQQERKERIVRYLKKRNQRNFNKTIKYACRKSLADRRTRVRGR 207
           +  + +  + +  V++ S  +R+ R++RY +KR  R F KTI+YA RK+ A+ R RV GR
Sbjct: 285 VEQQPDPASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGR 344

Query: 208 FARNNIE 215
           FA+  IE
Sbjct: 345 FAKREIE 351

[Close]

BLAST of Sed0021707 vs. ExPASy Swiss-Prot
Match: Q9SK53 (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.9e-05
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 153 EETNNIKVVSRYSQQERKERIVRYLKKRNQRNFNKTIKYACRKSLADRRTRVRGRFAR 211
           E TN      + S  ER+ R++RY +KR  R F KTI+YA RK+ A+ R R++GRFA+
Sbjct: 213 EMTNTETPAVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAK 270

[Close]

BLAST of Sed0021707 vs. ExPASy Swiss-Prot
Match: Q96502 (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.0e-04
Identity = 24/52 (46.15%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 159 KVVSRYSQQERKERIVRYLKKRNQRNFNKTIKYACRKSLADRRTRVRGRFAR 211
           +VV + +  ER+ R++RY +K+  R F+KTI+YA RK+ A+ R R++GRFA+
Sbjct: 268 QVVQQLTPMEREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAK 319

[Close]

BLAST of Sed0021707 vs. ExPASy Swiss-Prot
Match: O50055 (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04
Identity = 22/46 (47.83%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 165 SQQERKERIVRYLKKRNQRNFNKTIKYACRKSLADRRTRVRGRFAR 211
           S ++R+ R++RY +K+  R F KTI+YA RK+ A++R R++GRFA+
Sbjct: 282 SPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAK 327

[Close]

BLAST of Sed0021707 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 168 ERKERIVRYLKKRNQRNFNKTIKYACRKSLADRRTRVRGRFAR 211
           ER+ R++RY +KR  R F KTI+YA RK+ A+ R R++GRFA+
Sbjct: 294 EREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAK 336

[Close]

BLAST of Sed0021707 vs. ExPASy TrEMBL
Match: A0A0A0KGC0 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G138620 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.7e-92
Identity = 188/271 (69.37%), Postives = 215/271 (79.34%), Query Frame = 0


Query: 1   MASFSHNLHSDHLLYPNNNFCDVQSQLMGPGDTALCGIRNNYHN-HLDLAVG-QETFIPS 60
           MASF HN + D L YP NNF D+Q+ LM  GDT +CGIRNN++N ++DL V  +ETF+ S
Sbjct: 1   MASFPHNFYPD-LPYP-NNFSDLQTLLMAAGDTGMCGIRNNHNNDNIDLFVSREETFVSS 60

Query: 61  FDRTVPPEQSSD--ALSSLLAMPCPDFGGPVSDMTVPSLPEFNMGLYGIHSLIGSQPTVP 120
           FD+TV P+QSS   +LS  L M  PD  GPVSDMTVPSLPEFNM  Y IHSLI  QP VP
Sbjct: 61  FDQTVSPDQSSSDTSLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLINCQPQVP 120

Query: 121 GPCDYDEEFFGFMPDLKPLYRYNWGSESNYEIMHEMEETNNIKVVSRYSQQERKERIVRY 180
           G C+Y ++  GF+P+LKPLYR  WG++S YEI H +EET NIKV SRYS++ERKERIVRY
Sbjct: 121 GTCNYGDQLIGFVPELKPLYRDTWGNQSRYEI-HAVEET-NIKVASRYSEEERKERIVRY 180

Query: 181 LKKRNQRNFNKTIKYACRKSLADRRTRVRGRFARNNIELCDT--QIPLKTNQLTTPNHNL 240
           LKKRNQRNFNKTIKYACRK+LADRRTRVRGRFARNN ELCD   +IPLKTNQ +TPNHNL
Sbjct: 181 LKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDNDHEIPLKTNQFSTPNHNL 240

Query: 241 ----NQTNNEEEESWLQELAASLMYLPYVTN 262
               +QTN EEEESWLQELA SLMYLPYV N
Sbjct: 241 IKQIDQTNKEEEESWLQELATSLMYLPYVAN 267

[Close]

BLAST of Sed0021707 vs. ExPASy TrEMBL
Match: A0A6J1FX75 (zinc finger protein CONSTANS-LIKE 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448335 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.9e-83
Identity = 177/264 (67.05%), Postives = 206/264 (78.03%), Query Frame = 0


Query: 1   MASFSHNLHSDHLLYPNNNFCDVQSQLMGPGDTALCGIRN--NYHNHLDLAVGQETFIPS 60
           MASF H  +SDH LYP NNF D+QS LM  GD  + GIRN  + +N+++L  G+ETF+ +
Sbjct: 1   MASFPH-FYSDH-LYP-NNFSDLQSLLMAAGDPGIGGIRNDDDNNNNINLPHGEETFVST 60

Query: 61  FDRTVPPEQSSDALSSLLAMPCPDFGGPVSDMTVPSLPEFNMGLYGIHSLIGSQPTVPGP 120
            D+    E  SD  S LL MP P       D+TVPS PEFN G+YGIHS+IG+QP VPG 
Sbjct: 61  LDQMASFE--SDTQSPLLTMPYP-------DLTVPSSPEFNKGMYGIHSVIGNQPRVPGS 120

Query: 121 CDYDEEFFGFMPDLKPLYRYNWGSESNYEIMHEMEETNNIKVVSRYSQQERKERIVRYLK 180
           C+YD+E  GF+PDLKP YR  WG++S+YE +H +EET NIKV SRYS++ERKERIVRYLK
Sbjct: 121 CNYDDELLGFVPDLKPFYRNIWGTQSSYE-LHGVEET-NIKVASRYSEEERKERIVRYLK 180

Query: 181 KRNQRNFNKTIKYACRKSLADRRTRVRGRFARNNIELCDTQIPLKTNQLTTPNHNLNQTN 240
           KRNQRNFNKTIKYACRK+LADRRTRVRGRFARNN ELCDT+I LKTN LT P+H  NQTN
Sbjct: 181 KRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDTEIHLKTNHLTAPSH--NQTN 240

Query: 241 -NEEEESWLQELAASLMYLPYVTN 262
             EEEESWLQELAASLMYLPYVTN
Sbjct: 241 KEEEEESWLQELAASLMYLPYVTN 248

[Close]

BLAST of Sed0021707 vs. ExPASy TrEMBL
Match: A0A6J1JCW3 (uncharacterized protein LOC111483882 OS=Cucurbita maxima OX=3661 GN=LOC111483882 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 3.6e-82
Identity = 179/263 (68.06%), Postives = 204/263 (77.57%), Query Frame = 0


Query: 1   MASFSHNLHSDHLLYPNNNFCDVQSQLMGPGDTALCGIRN-NYHNHLDLAVGQETFIPSF 60
           MASF H  +SD LLYP NNF D+QS LM  GD  + GIRN N +N++DL  G+ETF+PSF
Sbjct: 1   MASFPH-FYSD-LLYP-NNFSDLQSLLMAAGDPRVGGIRNDNNNNNIDLPRGEETFVPSF 60

Query: 61  DRTVPPEQSSDALSSLLAMPCPDFGGPVSDMTVPSLPEFNMGLYGIHSLIGSQPTVPGPC 120
           D+    E  SD  S LL MP P       D+TVPS PEFN G+YGIHS+  SQP  P  C
Sbjct: 61  DQMASFE--SDTQSPLLTMPYP-------DLTVPSSPEFNKGMYGIHSVSDSQP--PASC 120

Query: 121 DYDEEFFGFMPDLKPLYRYNWGSESNYEIMHEMEETNNIKVVSRYSQQERKERIVRYLKK 180
           +YD+E   F+P+LKP YR  WG++S+YE MH +EET NIKV SRYS++ERKERIVRYLKK
Sbjct: 121 NYDDELLHFVPNLKPFYRNIWGTQSSYE-MHGVEET-NIKVASRYSEEERKERIVRYLKK 180

Query: 181 RNQRNFNKTIKYACRKSLADRRTRVRGRFARNNIELCDTQIPLKTNQLTTPNHNLNQTN- 240
           RNQRNFNKTIKYACRK+LADRRTRVRGRFARNN ELCDT+IPLKTN LT P+H  NQTN 
Sbjct: 181 RNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDTEIPLKTNHLTAPSH--NQTNK 240

Query: 241 NEEEESWLQELAASLMYLPYVTN 262
            EEEESWLQELAASLMYLPYVTN
Sbjct: 241 EEEEESWLQELAASLMYLPYVTN 245

[Close]

BLAST of Sed0021707 vs. ExPASy TrEMBL
Match: A0A1S4E134 (uncharacterized protein LOC103496299 OS=Cucumis melo OX=3656 GN=LOC103496299 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 3.4e-80
Identity = 167/242 (69.01%), Postives = 189/242 (78.10%), Query Frame = 0


Query: 1   MASFSHNLHSDHLLYPNNNFCDVQSQLMGPGDTALCGIR---NNYHNHLDLAVG-QETFI 60
           MASF HN +SD  LYP NNF D+Q+ LM  GD+ +CGIR   NN +N++DL V  +ETFI
Sbjct: 1   MASFPHNFYSD--LYP-NNFSDLQTLLMAAGDSGMCGIRNNNNNNNNNIDLFVSREETFI 60

Query: 61  PSFDRTVPPEQSSD--ALSSLLAMPCPDFGGPVSDMTVPSLPEFNMGLYGIHSLIGSQPT 120
           P FD+TV PEQSS    LS  L M  PD  GPVSDMTVPSLPEFNM  Y IHSLI  QP 
Sbjct: 61  PFFDQTVSPEQSSSDTGLSPFLTMQHPDLYGPVSDMTVPSLPEFNMSTYDIHSLISCQPQ 120

Query: 121 VPGPCDYDEEFFGFMPDLKPLYRYNWGSESNYEIMHEMEETNNIKVVSRYSQQERKERIV 180
           VPG C+Y +E  GF+P+LKPLYR  WG++S YE  H +EET NIKV SRYS++ERKERIV
Sbjct: 121 VPGTCNYGDELLGFVPELKPLYRDTWGNQSRYE-THAVEET-NIKVASRYSEEERKERIV 180

Query: 181 RYLKKRNQRNFNKTIKYACRKSLADRRTRVRGRFARNNIELCDT--QIPLKTNQLTTPNH 235
           RYLKKRNQRNFNKTIKYACRK+LADRRTRVRGRFARNN ELCD   +IPLKTNQ +TPNH
Sbjct: 181 RYLKKRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCDNDHEIPLKTNQFSTPNH 237

[Close]

BLAST of Sed0021707 vs. ExPASy TrEMBL
Match: A0A6J1G770 (uncharacterized protein LOC111451492 OS=Cucurbita moschata OX=3662 GN=LOC111451492 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 7.1e-78
Identity = 174/263 (66.16%), Postives = 196/263 (74.52%), Query Frame = 0


Query: 1   MASFSHNLHSDHLLYP--NNNFCDVQSQLMGPGDTALCGIRNNYHNHLDLAVGQETFIPS 60
           MASF H L+SDHLL P  NN F DV + LM  GD  +C IR N+  H+DLA G + FI  
Sbjct: 1   MASFPH-LYSDHLLPPNTNNTFSDVHTLLMPAGDYGMCSIRPNH--HVDLAAGGQPFI-- 60

Query: 61  FDRTVPPEQSSDALSSLLAMPCPDFGGPVSDMTVPSLPEFNMGLYGIHSLIGSQPTVPGP 120
               +P    SDALS LL MPC     PVSDMTVPS PE NMGLYGIHS IGSQ  +PG 
Sbjct: 61  ----IP--SPSDALSPLLTMPC-----PVSDMTVPSWPESNMGLYGIHSFIGSQAALPGA 120

Query: 121 CDYDEEFFGFMPDLKPLYRYNWGSESNYEIMHEMEETNNIKVVSRYSQQERKERIVRYLK 180
           C+Y +E FG++P+LKP+Y     S S YE M  +EE +NIKV  RYS++ERKERIVRYLK
Sbjct: 121 CEYGDEVFGYVPELKPVY-----SSSKYE-MGGVEE-SNIKVAIRYSEEERKERIVRYLK 180

Query: 181 KRNQRNFNKTIKYACRKSLADRRTRVRGRFARNNIELCDTQIPLKTNQLTTPNHNLNQTN 240
           KRNQRNFNKTIKYACRK+LADRRTRVRGRFARNN ELC TQIPL+TNQL   N   +QTN
Sbjct: 181 KRNQRNFNKTIKYACRKTLADRRTRVRGRFARNNNELCHTQIPLQTNQL---NKQRDQTN 237

Query: 241 NEEEESWLQELAASLMYLPYVTN 262
            EEEESWLQELAASLMYLPYVT+
Sbjct: 241 KEEEESWLQELAASLMYLPYVTD 237

[Close]

BLAST of Sed0021707 vs. TAIR 10
Match: AT3G12890.1 (activator of spomin::LUC2 )

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-23
Identity = 66/146 (45.21%), Postives = 91/146 (62.33%), Query Frame = 0


Query: 123 EEFFGFMPDLKPLYRYNWGSESNYEIMHEMEETNNIKVVSRYSQQERKERIVRYLKKRNQ 182
           +E++GF P++KPL+R   G +S       ++   N K V RYS +ERK+RI+RYLKK+NQ
Sbjct: 94  QEYYGFSPEIKPLFRPATGEQSWGNSEGGIQAEPNTK-VGRYSVEERKDRIMRYLKKKNQ 153

Query: 183 RNFNKTIKYACRKSLADRRTRVRGRFARNNIELCDTQIPLKTNQLTTPNHNLNQTN---- 242
           RNFNKTIKY CRK+LADRR RVRGRFARNN + C+ Q  +  N     NH+  + +    
Sbjct: 154 RNFNKTIKYVCRKTLADRRVRVRGRFARNN-DTCEEQPHMSKNH---NNHSEKEEDMFSG 213

Query: 243 -------NEEEESWLQELAASLMYLP 258
                   E ++ WL E  ++L+  P
Sbjct: 214 SDDYLIQMEHDDGWLHEAMSNLIPFP 234

[Close]

BLAST of Sed0021707 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein )

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-14
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 154 ETNNIKVVSRYSQQERKERIVRYLKKRNQRNFNKTIKYACRKSLADRRTRVRGRFARNN 213
           E  N K V RYS +ERKE+I +Y  KRNQRNF KTIKYACRK+LAD R R+RGRFARN+
Sbjct: 201 EEQNFK-VGRYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFARND 258

[Close]

BLAST of Sed0021707 vs. TAIR 10
Match: AT1G63820.1 (CCT motif family protein )

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-13
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 161 VSRYSQQERKERIVRYLKKRNQRNFNKTIKYACRKSLADRRTRVRGRFARNN 213
           V RYS +ERKE+I +Y  KR QRNF KTIKYACRK+LAD R RVRGRFARN+
Sbjct: 184 VGRYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFARND 235

[Close]

BLAST of Sed0021707 vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein )

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-13
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 154 ETNNIKVVSRYSQQERKERIVRYLKKRNQRNFNKTIKYACRKSLADRRTRVRGRFARNN 213
           E + +  V + S ++RKE+I RY+KKRN+RNFNK IKYACRK+LAD R RVRGRFA+N+
Sbjct: 296 EDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKND 354

[Close]

BLAST of Sed0021707 vs. TAIR 10
Match: AT2G33350.2 (CCT motif family protein )

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-13
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 154 ETNNIKVVSRYSQQERKERIVRYLKKRNQRNFNKTIKYACRKSLADRRTRVRGRFARNN 213
           E + +  V + S ++RKE+I RY+KKRN+RNFNK IKYACRK+LAD R RVRGRFA+N+
Sbjct: 295 EDSTLNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKND 353

The following BLAST results are available for this feature:

BLAST of Sed0021707 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150045.2	3.6e-92	69.37	uncharacterized protein LOC101221095 [Cucumis sativus]	[more]
XP_038902616.1	6.1e-92	71.38	zinc finger protein CONSTANS-LIKE 1-like [Benincasa hispida]	[more]
KAE8646876.1	5.4e-88	68.94	hypothetical protein Csa_021098 [Cucumis sativus]	[more]
XP_023511907.1	1.5e-85	68.05	zinc finger protein CONSTANS-LIKE 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6570585.1	2.1e-84	67.42	Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. soro...	[more]

BLAST of Sed0021707 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39057	3.5e-05	40.30	Zinc finger protein CONSTANS OS=Arabidopsis thaliana OX=3702 GN=CO PE=1 SV=1	[more]
Q9SK53	5.9e-05	46.55	Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1...	[more]
Q96502	1.0e-04	46.15	Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1...	[more]
O50055	1.7e-04	47.83	Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1...	[more]
Q940T9	1.7e-04	53.49	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]

BLAST of Sed0021707 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGC0	1.7e-92	69.37	CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G138620 PE=4 SV...	[more]
A0A6J1FX75	1.9e-83	67.05	zinc finger protein CONSTANS-LIKE 1-like isoform X1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1JCW3	3.6e-82	68.06	uncharacterized protein LOC111483882 OS=Cucurbita maxima OX=3661 GN=LOC111483882...	[more]
A0A1S4E134	3.4e-80	69.01	uncharacterized protein LOC103496299 OS=Cucumis melo OX=3656 GN=LOC103496299 PE=...	[more]
A0A6J1G770	7.1e-78	66.16	uncharacterized protein LOC111451492 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]

BLAST of Sed0021707 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12890.1	1.0e-23	45.21	activator of spomin::LUC2	[more]
AT5G41380.1	5.5e-14	69.49	CCT motif family protein	[more]
AT1G63820.1	2.1e-13	73.08	CCT motif family protein	[more]
AT2G33350.1	2.1e-13	62.71	CCT motif family protein	[more]
AT2G33350.2	2.1e-13	62.71	CCT motif family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 169..211 e-value: 3.2E-16 score: 59.2
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 169..211 score: 14.842356
None	No IPR available	PANTHER	PTHR31717	ZINC FINGER PROTEIN CONSTANS-LIKE 10	coord: 1..260
None	No IPR available	PANTHER	PTHR31717:SF56	ACTIVATOR OF SPOMIN::LUC2	coord: 1..260

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021707.1	Sed0021707.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding