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Sed0021705 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAGGCAATAAGAAAAGTTGACATTAGAAAGCAATTCCTCAAGGCAGTAGGTTGAGGGTTCCGCCTCCGCCGAACACCAGAAATGGCTTCCGTTTGCCGATCGCTTCTTACGGCGGCGGGATCGAGGTCCGTGGCCGGCCGGACCAGAACTCTCCCTCTCAAAACCCTAAATCCAATGCCTCTTTCTTCTTCTTCTTCTTCTTCAAGAAATCTCTCTTACGTTTTCAGGTACTTCAAATCTCGCAATTTCATCCATCCACTCATTTACGTACCGCAATTTCCTTGCGATCTTAGTTAATTTTCCGGTTTCGGAATTCTTATGATCCTCAATCAACTTGATTTGCTTCCATTTTCCATTGTTTTTCTGCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCGCTGATTCCACTCCACAGCGCCGTCGCCTCTGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGTTGTTGTTTCTCCCTTTCTCTATCCAAGTTGTTCTTATACACATGTGTGTTTCGGATTTTGTTTTGTGAATGCATCTATTTTTCTTGCTCTTTTGTAAGTTCTCATGTTCTGCGAAATCTCTATTGTGATTTCCTGTAATATTGCTGCTCTTTCCCAATTTAAGTTCATAAAGGAAGTGGAAGAAGTTTGGGATTGGCGTTCTTGCTTGCATAGAATGTGCATTGTGCTTTCAAATTTTATTTCTTTGAACTCTTAAGCCTGGTCTGGGAACGATTTAGTCCTTAATTTGTTAATTTGTAGGAGATAGTTGCCTTTTACTAATAATTTCGGATTTAGGAACTAAGAGGTTAGGTCTACCCACGCCTACCTATGAATTAATTTACTATGAATTTTCTTAACAGCTAAATGTTGTAGTGTTAACGATCATGGAGTGCCTAGTGGTCAAGTGGGTCTTGTGGAACTAAGAGGTGATGGCCTCAATCCATGGTGGCCACAGGAATTAGTTTCCTATGGGTTTCCTTGACATCCAAGTATTGTAGGGCCAGGTGATATATCCCGTGATAATAGTTGAGGTGCACGCAAACTAACCCAAACAGTCACGGATAACAAAAACAAAAAAAATAAATGTAGTAGTGTCAAGTGTTTGTCCCGTTAGAATAGTTGAGGTGTGTATAAGCTGGCCCAGACATTCACTAATATAAAAAATAATTATAATTTCTTGTTAGAAGAAAACGTTTTTTGGAGCTTTGAGCTAATTTCAAAAAATAATGAAAAACTAAGCATAGTTCATACAAGCTTATGCATAAAAAAACTAAAAACTAAAAACAAAATCGTTACTAAACTCATTAGTTGACTAACATTGCATAAATGATAATCCATAACTATTTATCTTGAATGGTCATACGCACTCATACATCTCTTGTTTTGCATTGGGTATGAAATCATATCTTAACTTCCCCCTTATACATTATCTTTAGGATTTGCGACGACTTTGTGACATAAACACTCGTAAAGGAAGACGAATTTGAATCGACTATACAGCTCAATGACTGGTAGCTGAGAGGACACTTTGTAAGACTTGTGAGGTTTTTCTTCTTTCCCTACTAATCTTTGTTAGATACCTTTAGCACAAGGAAGAATCATTTAGACGACTGTTTTTTAGTTTTGATCATTGTAAAATGCAATGCAGCCACCATTTCTGGATATCTGAGAGTTGTTGTTTGATCCTCTGACCACAGACCTTGAAAGATTGAATTGTTATTTGGCATTTCTCTGTTGCTATTAACTTTGTTCAATAACATGCATGAGC AAAAGGCAATAAGAAAAGTTGACATTAGAAAGCAATTCCTCAAGGCAGTAGGTTGAGGGTTCCGCCTCCGCCGAACACCAGAAATGGCTTCCGTTTGCCGATCGCTTCTTACGGCGGCGGGATCGAGGTCCGTGGCCGGCCGGACCAGAACTCTCCCTCTCAAAACCCTAAATCCAATGCCTCTTTCTTCTTCTTCTTCTTCTTCAAGAAATCTCTCTTACGTTTTCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCGCTGATTCCACTCCACAGCGCCGTCGCCTCTGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCGACGACTTTGTGACATAAACACTCGTAAAGGAAGACGAATTTGAATCGACTATACAGCTCAATGACTGGTAGCTGAGAGGACACTTTGTAAGACTTGTGAGGTTTTTCTTCTTTCCCTACTAATCTTTGTTAGATACCTTTAGCACAAGGAAGAATCATTTAGACGACTGTTTTTTAGTTTTGATCATTGTAAAATGCAATGCAGCCACCATTTCTGGATATCTGAGAGTTGTTGTTTGATCCTCTGACCACAGACCTTGAAAGATTGAATTGTTATTTGGCATTTCTCTGTTGCTATTAACTTTGTTCAATAACATGCATGAGC ATGGCTTCCGTTTGCCGATCGCTTCTTACGGCGGCGGGATCGAGGTCCGTGGCCGGCCGGACCAGAACTCTCCCTCTCAAAACCCTAAATCCAATGCCTCTTTCTTCTTCTTCTTCTTCTTCAAGAAATCTCTCTTACGTTTTCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCGCTGATTCCACTCCACAGCGCCGTCGCCTCTGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCGACGACTTTGTGA MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL Homology
BLAST of Sed0021705 vs. NCBI nr
Match: XP_022136047.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia]) HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30 Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 0
BLAST of Sed0021705 vs. NCBI nr
Match: XP_023531748.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 139.0 bits (349), Expect = 2.0e-29 Identity = 78/94 (82.98%), Postives = 83/94 (88.30%), Query Frame = 0
BLAST of Sed0021705 vs. NCBI nr
Match: XP_022933658.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 136.7 bits (343), Expect = 1.0e-28 Identity = 77/94 (81.91%), Postives = 81/94 (86.17%), Query Frame = 0
BLAST of Sed0021705 vs. NCBI nr
Match: XP_038887804.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [Benincasa hispida]) HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27 Identity = 76/94 (80.85%), Postives = 80/94 (85.11%), Query Frame = 0
BLAST of Sed0021705 vs. NCBI nr
Match: KAG7022286.1 (hypothetical protein SDJN02_16017, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27 Identity = 74/90 (82.22%), Postives = 79/90 (87.78%), Query Frame = 0
BLAST of Sed0021705 vs. ExPASy TrEMBL
Match: A0A6J1C4G8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007834 PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 5.2e-31 Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 0
BLAST of Sed0021705 vs. ExPASy TrEMBL
Match: A0A6J1F5F6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441012 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 4.9e-29 Identity = 77/94 (81.91%), Postives = 81/94 (86.17%), Query Frame = 0
BLAST of Sed0021705 vs. ExPASy TrEMBL
Match: A0A0A0K7P3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G268490 PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 3.9e-26 Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 0
BLAST of Sed0021705 vs. ExPASy TrEMBL
Match: A0A6J1GKU0 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111454867 PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 7.3e-25 Identity = 72/97 (74.23%), Postives = 79/97 (81.44%), Query Frame = 0
BLAST of Sed0021705 vs. ExPASy TrEMBL
Match: A0A6J1I675 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471072 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24 Identity = 72/96 (75.00%), Postives = 78/96 (81.25%), Query Frame = 0
BLAST of Sed0021705 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 88.2 bits (217), Expect = 3.8e-18 Identity = 53/97 (54.64%), Postives = 71/97 (73.20%), Query Frame = 0
BLAST of Sed0021705 vs. TAIR 10
Match: AT4G39300.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 81.3 bits (199), Expect = 4.7e-16 Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 0
BLAST of Sed0021705 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.8 bits (112), Expect = 5.7e-06 Identity = 25/65 (38.46%), Postives = 42/65 (64.62%), Query Frame = 0
BLAST of Sed0021705 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05 Identity = 24/60 (40.00%), Postives = 40/60 (66.67%), Query Frame = 0
BLAST of Sed0021705 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 ) HSP 1 Score: 45.8 bits (107), Expect = 2.2e-05 Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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