Sed0021700 (gene) Chayote v1

Overview


Name	Sed0021700
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L17
Location	LG04: 231408 .. 233637 (-)
RNA-Seq Expression	Sed0021700
Synteny	Sed0021700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACAGCGAAATCATACTTTTTTCAGAAGCCGAAGTTTCAGACGTCGCCATGGTTCGTCCTCAACCTTCTCGATTCATTCTTCGTAACATTGTAATCTGAGTTTTTGAGTTTCCGATTAATCTTCAATTTCTTGTTTTGTTCATCGTCTTAGGTGAAGTATTCGAGGGAACCTGATAATCACACTAAGTGTATAGTACTTTTTCCTCACTTTCGATATCTATTTGAAGCTTTGCATTTGATTTTTTTTGGTTTAGTTTATCTTCTATCGCCTTGAATCTGATCTTTTTGCTTTGAACTGATATTCTGTTTTTTCTCTTTTCAGCCTGCAAAGCCAGAGGCTCTGACCTTAGAGTCCACTTTAAGGTATATTTTGTTTTTTTTCCACTTTTTTGAGTTTGAACTCTTTTAATTACATTTGATTTGAAGCTATATGTACCAAGGCATGTATCAGTAGTGATTTTATGTTTCATATTTGTTCTAGGATCCGAAGTTTATCTTCAGAATTGAAGCTTATACTTGTGCATATAAATTTCTGTATGATTTGATGTTCTCCTATTGATTAGTTTTCTACTTGTATCCGTTGTGTTGAGTGTTTGATTGAAGACCATATTCCCTTTTCCGTGCAAGTAATTAAGTGATTTGGGTAATAATCTGTTTCGTTCTTTAAGCTATTGCATATTTTCATTTTCCATCCAAGAGCTTTCCCCATGTCCAGGCTTGAGAGCTAATGCTGGTCAAATCCTTTACTTTCAAGCTATAAAAAGCAGATTATCTACATGAGCTATTGCACATTATATAGGCATAGCTTTCCTTCCTTGAATCTTCTGTGTAACCTGATGATAAAATCAGGGCTCTGTTGCCTTGTGTGAACCGGGTTCTTGTAAACTTCAGGGAAACTGTATACATTGTTATTGGGTGAATCTCTGTAACCCATAGTGTCTGAAGGTTCAGTGAATGAGTCTACATATTCATCTTCTAGCTTGACTTGCATATATATATATATACCACCTGTTGGTTAGATTTTTGATAATAATGTGTTTGTCTATATATTATAGAACACAAGGGAAACTGCACATGCCATCAGGAAGTTGCCATTGGTCAAGGCCAAGAGTTACCTCGAGGATGTACTTGCCCACAAACAGGCCATTCCTTTCCGTCGCTTTTGTCGTGGAGTTGGACGAACTGCCCAGGCAAAGAATAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTCAAATCTGCTAAGTTTATTCTCGATTTGCTTAAGAATGCCGAGAGCAATGCAGAAGTATGGACTTCTTTTCTGGTCCCACCCTCCCCCTGAATTGTTACGGTTTTTACTTATAAGAAGTTATGTGCTTTCAGGTTAAGGGCCTGGATGTTGATTTGCTACATGTCTCACACATCCAAGTAAACCAAGCTCAGAAACAAAGACGCCGTACCTACCGTGCACATGGAAGAATCAACCGTATGTCTGACTACAGTTTACTTATTTTTCTGTGGATTATAGTCTGCTTTAACATCCTGTCTTACCTTTCATCCCTTTGTTTTTCTATCTATTTGGTTGGCAGCTTACATGTCTTCGCCTTGCCATATTGAGCTGATTTTGTCGGAGAAAGAAGAGCCTGTCAAGAAAGAGGTAATTATATCAAATTGCCTAATTACTTTAGTGCTGTGAAGGATATTCTGCTTTAGCCATGTTTCTTATTGCTCATGGTTCATGATAAAACAGCCGGAGACTCAGCTGGCGACCGGCAAACCAAAGAAAGGTCAAGCTCTACGTAGTGGTGCTTCATCTTGAATGGCATAAGTACAAGTTTTGGTGTTGTTTTTGTTGTGCCATTTATTTCTTGAAGTAAGTTTAATTATTGATTACTTTCTAGAACGAAGTATTATCATTTAGATGCTGTGCAACACAATCTTTGGAACCTTTTCTAGCTTAATTTTATTGACGTTACAATCACATTCTGTTATTTGATTCTATTTCATAAATGAGATCAGATGACCCCTCGGTGCCCGATGATCTCCATTGATTTCCCACGGCTAAATTAAACCAGAACTTGTTCTTTGCAATGCTGAGCGAATGGTAAGGCCATTGGTTCATGTAAATTTTCTGTTGGTATGCAAACAAAGTACCCCACGGTCAGATGAGGGGAAGATCATGGGTATACAAGTGATGACAATCATCTCTATTGGTATGAGACATTTTGGGGAAGCTAAAAAACAAAGTC

mRNA sequence

CGACAGCGAAATCATACTTTTTTCAGAAGCCGAAGTTTCAGACGTCGCCATGGTGAAGTATTCGAGGGAACCTGATAATCACACTAAGTCCTGCAAAGCCAGAGGCTCTGACCTTAGAGTCCACTTTAAGAACACAAGGGAAACTGCACATGCCATCAGGAAGTTGCCATTGGTCAAGGCCAAGAGTTACCTCGAGGATGTACTTGCCCACAAACAGGCCATTCCTTTCCGTCGCTTTTGTCGTGGAGTTGGACGAACTGCCCAGGCAAAGAATAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTCAAATCTGCTAAGTTTATTCTCGATTTGCTTAAGAATGCCGAGAGCAATGCAGAAGTTAAGGGCCTGGATGTTGATTTGCTACATGTCTCACACATCCAAGTAAACCAAGCTCAGAAACAAAGACGCCGTACCTACCGTGCACATGGAAGAATCAACCCTTACATGTCTTCGCCTTGCCATATTGAGCTGATTTTGTCGGAGAAAGAAGAGCCTGTCAAGAAAGAGCCGGAGACTCAGCTGGCGACCGGCAAACCAAAGAAAGGTCAAGCTCTACGTAGTGGTGCTTCATCTTGAATGGCATAAGTACAAGTTTTGGTGTTGTTTTTGTTGTGCCATTTATTTCTTGAAGTAAGTTTAATTATTGATTACTTTCTAGAACGAAGTATTATCATTTAGATGCTGTGCAACACAATCTTTGGAACCTTTTCTAGCTTAATTTTATTGACGTTACAATCACATTCTGTTATTTGATTCTATTTCATAAATGAGATCAGATGACCCCTCGGTGCCCGATGATCTCCATTGATTTCCCACGGCTAAATTAAACCAGAACTTGTTCTTTGCAATGCTGAGCGAATGGTAAGGCCATTGGTTCATGTAAATTTTCTGTTGGTATGCAAACAAAGTACCCCACGGTCAGATGAGGGGAAGATCATGGGTATACAAGTGATGACAATCATCTCTATTGGTATGAGACATTTTGGGGAAGCTAAAAAACAAAGTC

Coding sequence (CDS)

ATGGTGAAGTATTCGAGGGAACCTGATAATCACACTAAGTCCTGCAAAGCCAGAGGCTCTGACCTTAGAGTCCACTTTAAGAACACAAGGGAAACTGCACATGCCATCAGGAAGTTGCCATTGGTCAAGGCCAAGAGTTACCTCGAGGATGTACTTGCCCACAAACAGGCCATTCCTTTCCGTCGCTTTTGTCGTGGAGTTGGACGAACTGCCCAGGCAAAGAATAGGCATTCCAATGGCCAAGGGCGCTGGCCTGTCAAATCTGCTAAGTTTATTCTCGATTTGCTTAAGAATGCCGAGAGCAATGCAGAAGTTAAGGGCCTGGATGTTGATTTGCTACATGTCTCACACATCCAAGTAAACCAAGCTCAGAAACAAAGACGCCGTACCTACCGTGCACATGGAAGAATCAACCCTTACATGTCTTCGCCTTGCCATATTGAGCTGATTTTGTCGGAGAAAGAAGAGCCTGTCAAGAAAGAGCCGGAGACTCAGCTGGCGACCGGCAAACCAAAGAAAGGTCAAGCTCTACGTAGTGGTGCTTCATCTTGA

Protein sequence

MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQALRSGASS

Homology

[Close]

BLAST of Sed0021700 vs. NCBI nr
Match: XP_023545223.1 (60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.5 bits (911), Expect = 2.7e-94
Identity = 178/183 (97.27%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0021700 vs. NCBI nr
Match: XP_038885177.1 (60S ribosomal protein L17-2-like [Benincasa hispida])

HSP 1 Score: 354.4 bits (908), Expect = 6.0e-94
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0021700 vs. NCBI nr
Match: XP_004144196.1 (60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal protein L17-2-like [Momordica charantia] >XP_022962539.1 60S ribosomal protein L17-2-like [Cucurbita moschata] >KAG6598615.1 60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 354.0 bits (907), Expect = 7.8e-94
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0021700 vs. NCBI nr
Match: XP_022997268.1 (60S ribosomal protein L17-2-like [Cucurbita maxima])

HSP 1 Score: 351.7 bits (901), Expect = 3.9e-93
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEE VKKEPETQLATGKPKKGQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVKKEPETQLATGKPKKGQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0021700 vs. NCBI nr
Match: XP_008445497.1 (PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo])

HSP 1 Score: 350.9 bits (899), Expect = 6.6e-93
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETA AIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0021700 vs. ExPASy Swiss-Prot
Match: P51413 (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 315.1 bits (806), Expect = 5.3e-85
Identity = 157/176 (89.20%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAK YLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
            RFCRGVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Sed0021700 vs. ExPASy Swiss-Prot
Match: Q93VI3 (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 5.8e-84
Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAK YLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
            RFCRGVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Sed0021700 vs. ExPASy Swiss-Prot
Match: O48557 (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.1e-77
Identity = 145/170 (85.29%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS+EP N TKS KA G DLRVHFKNTRETA A+RKLPL KAK YLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RR+C GVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD L+VSHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 171
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]

BLAST of Sed0021700 vs. ExPASy Swiss-Prot
Match: P35266 (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.2e-76
Identity = 141/167 (84.43%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS +P N TKS KA G DLRVHFKNTRETA A+RK+PL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RR+CRGVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVD L++SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 168
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]

BLAST of Sed0021700 vs. ExPASy Swiss-Prot
Match: P35267 (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.0e-75
Identity = 140/170 (82.35%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSR+P N TKS KA G DLRVHFKNTRETA A+R++PL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RR+CRGVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L++SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 171
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170

[Close]

BLAST of Sed0021700 vs. ExPASy TrEMBL
Match: A0A6J1BRY8 (60S ribosomal protein L17-2-like OS=Momordica charantia OX=3673 GN=LOC111005205 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.8e-94
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0021700 vs. ExPASy TrEMBL
Match: A0A6J1HHD8 (60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462939 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.8e-94
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0021700 vs. ExPASy TrEMBL
Match: A0A6J1KDD3 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492225 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.9e-93
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEE VKKEPETQLATGKPKKGQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVKKEPETQLATGKPKKGQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0021700 vs. ExPASy TrEMBL
Match: A0A1S3BCV8 (60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.2e-93
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETA AIRKLPL KAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0021700 vs. ExPASy TrEMBL
Match: A0A6J1KKP7 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496586 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.6e-92
Identity = 176/183 (96.17%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAK YLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+A+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0021700 vs. TAIR 10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 315.1 bits (806), Expect = 3.8e-86
Identity = 157/176 (89.20%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAK YLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
            RFCRGVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Sed0021700 vs. TAIR 10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 311.6 bits (797), Expect = 4.2e-85
Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAK YLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
            RFCRGVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Sed0021700 vs. TAIR 10
Match: AT1G67430.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-55
Identity = 118/176 (67.05%), Postives = 123/176 (69.89%), Query Frame = 0


Query: 1   MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKSYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAK YLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
            RFCRGVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNA                 
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNA----------------- 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 177
                                      ELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 121 ---------------------------ELILSEKEEPVKKEPETQLA-AKSKKSAA 131

The following BLAST results are available for this feature:

BLAST of Sed0021700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545223.1	2.7e-94	97.27	60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_038885177.1	6.0e-94	97.27	60S ribosomal protein L17-2-like [Benincasa hispida]	[more]
XP_004144196.1	7.8e-94	96.72	60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal prot...	[more]
XP_022997268.1	3.9e-93	96.72	60S ribosomal protein L17-2-like [Cucurbita maxima]	[more]
XP_008445497.1	6.6e-93	96.72	PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo]	[more]

BLAST of Sed0021700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51413	5.3e-85	89.20	60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2	[more]
Q93VI3	5.8e-84	89.66	60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1	[more]
O48557	1.1e-77	85.29	60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1	[more]
P35266	1.2e-76	84.43	60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]
P35267	1.0e-75	82.35	60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]

BLAST of Sed0021700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRY8	3.8e-94	96.72	60S ribosomal protein L17-2-like OS=Momordica charantia OX=3673 GN=LOC111005205 ...	[more]
A0A6J1HHD8	3.8e-94	96.72	60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462939 P...	[more]
A0A6J1KDD3	1.9e-93	96.72	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492225 PE=...	[more]
A0A1S3BCV8	3.2e-93	96.72	60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV...	[more]
A0A6J1KKP7	1.6e-92	96.17	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496586 PE=...	[more]

BLAST of Sed0021700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67430.1	3.8e-86	89.20	Ribosomal protein L22p/L17e family protein	[more]
AT1G27400.1	4.2e-85	89.66	Ribosomal protein L22p/L17e family protein	[more]
AT1G67430.2	1.5e-55	67.05	Ribosomal protein L22p/L17e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 1..182 e-value: 4.3E-75 score: 253.4
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 1..154
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 17..152 e-value: 1.7E-38 score: 131.0
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 15..151 e-value: 7.94958E-36 score: 119.133
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAM	TIGR01038	TIGR01038	coord: 4..154 e-value: 1.4E-59 score: 198.3
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 1..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..183
None	No IPR available	PANTHER	PTHR11593:SF35	60S RIBOSOMAL PROTEIN L17-2-LIKE	coord: 1..183
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 127..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021700.1	Sed0021700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome