Sed0021692 (gene) Chayote v1

Overview


Name	Sed0021692
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat-containing protein
Location	LG13: 25863785 .. 25864795 (+)
RNA-Seq Expression	Sed0021692
Synteny	Sed0021692

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTCTCTGTAGCTTCCAACTTTCCTGGAAATCCCTTGTTAGGCCTCTCGTGACTTCTTCATTGTTGTCTTGTCTGTATGGTTGAGTTTTTTTTCTTTCAAATCTGTCGCCATCCGAACCAGCTTGCGTAACTTGACTATCGTTTGAGACATATTGCCTAAAACTACAATATTTGGATGTCAAGGAAGGTAGAGGACCGCATAAATTGATCCTATTAGCTCTTAGCTTGGTTGTATAGTTGATTGTTGAATGAATCAATCTAGGGAAAGAAAAAACAATGGACTCTGTGATTCGGTAGGTAGCATCGGAAATGGAGGGATTATGTCAAGGATTAGGAGTTATTTGTAGTTTTCAACCGTAGAAATTTGTTGAGGATCTCACATGGGAAAAGTGAAAAGATATCACAGCACCTATAAGATACATGTGCTAGTTCACTCGTTGTCATTGATAATTGATTTTGAAATGAAATTCGTGTTTATCTAATATGGTACCAGACTAGAGTCTATCAAACGTAAATAAATATTTTGTTAAAGGCGAGACTCCTCTTAATAATAGACCACCATATTAGAGAGCAGGTTGAAGATCTTATTATAAGATATTTGGCTTTTATTTTTAAATATTTGAGTGTTCAGGTACGTTTACGCCCACCATGGCTATACTCATGGTACAAATTGCGCGATGTTGATTTCATGCAAGCATGGGATTCAGCGAAAAGAGCTTTTGGATTCTCTCCGGACCTTCAAACTTATGAAGCTCTTATACATGGCAGTGTGGAATCAAAATGTTTTGATTTTGCTGTTAGATGTTTTGAGGAAATGATGCTGTCTGGCATTGTGCCTAACACAATCATATTGGAGCATATGCTTGAAGGAGTCTGCAAGGGGAAAAAATTGGATGAAGTAAAAGAGTTATTGAATGTTGTGTTTGACAAAGGATGGGAGATCAATTTATCTGAGAAGGTGGAAGCAAAGAGTCAACCGAAAAATTGGAGTTTCGCTGCACCATAG

mRNA sequence

ATGATTTTCTCTGTAGCTTCCAACTTTCCTGGAAATCCCTTGTTAGGCCTCTCACTCCTCTTAATAATAGACCACCATATTAGAGAGCAGGTTGAAGATCTTATTATAAGATATTTGGCTTTTATTTTTAAATATTTGAGTGTTCAGGTACGTTTACGCCCACCATGGCTATACTCATGGTACAAATTGCGCGATGTTGATTTCATGCAAGCATGGGATTCAGCGAAAAGAGCTTTTGGATTCTCTCCGGACCTTCAAACTTATGAAGCTCTTATACATGGCAGTGTGGAATCAAAATGTTTTGATTTTGCTGTTAGATGTTTTGAGGAAATGATGCTGTCTGGCATTGTGCCTAACACAATCATATTGGAGCATATGCTTGAAGGAGTCTGCAAGGGGAAAAAATTGGATGAAGTAAAAGAGTTATTGAATGTTGTGTTTGACAAAGGATGGGAGATCAATTTATCTGAGAAGGTGGAAGCAAAGAGTCAACCGAAAAATTGGAGTTTCGCTGCACCATAG

Coding sequence (CDS)

ATGATTTTCTCTGTAGCTTCCAACTTTCCTGGAAATCCCTTGTTAGGCCTCTCACTCCTCTTAATAATAGACCACCATATTAGAGAGCAGGTTGAAGATCTTATTATAAGATATTTGGCTTTTATTTTTAAATATTTGAGTGTTCAGGTACGTTTACGCCCACCATGGCTATACTCATGGTACAAATTGCGCGATGTTGATTTCATGCAAGCATGGGATTCAGCGAAAAGAGCTTTTGGATTCTCTCCGGACCTTCAAACTTATGAAGCTCTTATACATGGCAGTGTGGAATCAAAATGTTTTGATTTTGCTGTTAGATGTTTTGAGGAAATGATGCTGTCTGGCATTGTGCCTAACACAATCATATTGGAGCATATGCTTGAAGGAGTCTGCAAGGGGAAAAAATTGGATGAAGTAAAAGAGTTATTGAATGTTGTGTTTGACAAAGGATGGGAGATCAATTTATCTGAGAAGGTGGAAGCAAAGAGTCAACCGAAAAATTGGAGTTTCGCTGCACCATAG

Protein sequence

MIFSVASNFPGNPLLGLSLLLIIDHHIREQVEDLIIRYLAFIFKYLSVQVRLRPPWLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEINLSEKVEAKSQPKNWSFAAP

Homology

[Close]

BLAST of Sed0021692 vs. NCBI nr
Match: XP_038897030.1 (pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 166.4 bits (420), Expect = 2.2e-37
Identity = 78/99 (78.79%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 56  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSG 115
           +++ + KL DV+ MQAW SAK+AFGFSPDL+TYEALIHGSV+SKCFDFAV+CFEEMMLSG
Sbjct: 191 FIFVFAKLHDVNSMQAWYSAKKAFGFSPDLRTYEALIHGSVKSKCFDFAVKCFEEMMLSG 250

Query: 116 IVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN 155
           IVPNTIILE+MLEG+CK K LDEVK+ LNVV DKGWEIN
Sbjct: 251 IVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEIN 289

[Close]

BLAST of Sed0021692 vs. NCBI nr
Match: XP_008466249.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09060-like [Cucumis melo] >KAA0038720.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK31332.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-34
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 62  KLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTI 121
           KLRDV+ MQAW SAK+AF FSPDL+TYEALIHGSV+SKCFDFAV+CFEEMMLS IVPN I
Sbjct: 197 KLRDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAVKCFEEMMLSDIVPNAI 256

Query: 122 ILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN 155
           ILE+MLEG+CK K  DEVK+ LNVV D GWEIN
Sbjct: 257 ILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIN 289

[Close]

BLAST of Sed0021692 vs. NCBI nr
Match: XP_022148798.1 (pentatricopeptide repeat-containing protein At3g48810-like [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-34
Identity = 72/99 (72.73%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 56  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSG 115
           ++ ++ +L DVD MQAW SAKRAFGFSPDLQTYE+LI+GSV SKCFDFAVRCFEEMM+SG
Sbjct: 203 FISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAVRCFEEMMISG 262

Query: 116 IVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN 155
           IVPN IILE+M+EG+CK K  +EVK+ LN+VFD GWEI+
Sbjct: 263 IVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEID 301

[Close]

BLAST of Sed0021692 vs. NCBI nr
Match: XP_022975914.1 (pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita maxima] >XP_022975915.1 pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 7.3e-33
Identity = 75/105 (71.43%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 56  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSG 115
           ++ ++ KLRDV+ M+AW SAKRAF FS DL+TYEALIHGSV SKCFDFAVRCF+EMMLSG
Sbjct: 191 FISAFAKLRDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVNSKCFDFAVRCFDEMMLSG 250

Query: 116 IVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEI--NLSEK 159
           IVPN IIL++MLEG CK K LDE+K+ L VV DKGWEI  N+ EK
Sbjct: 251 IVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEIKWNVVEK 295

[Close]

BLAST of Sed0021692 vs. NCBI nr
Match: KAG7024539.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.4 bits (376), Expect = 2.8e-32
Identity = 71/99 (71.72%), Postives = 84/99 (84.85%), Query Frame = 0


Query: 56  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSG 115
           ++ ++ K  DV+ M+AW SAKRAF FS DL+TYEALIHGSV+SKCFDFAVRCF+EMMLSG
Sbjct: 191 FISAFAKRHDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVKSKCFDFAVRCFDEMMLSG 250

Query: 116 IVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN 155
           IVPN IIL++MLEG CK K LDE+K+ L VV DKGWEIN
Sbjct: 251 IVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEIN 289

[Close]

BLAST of Sed0021692 vs. ExPASy Swiss-Prot
Match: Q8VZE4 (Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana OX=3702 GN=At4g01570 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.5e-08
Identity = 32/94 (34.04%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 67  DFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHM 126
           D +  WD  K   G  PD  TY  LI G  +S   D A+R + EM  +G VP+TI+   +
Sbjct: 307 DALIVWDELK-VSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCL 366

Query: 127 LEGVCKGKKLDEVKELLNVVFDKG-----WEINL 156
           L+G  K +K+ E  +L   +  +G     W  N+
Sbjct: 367 LDGTLKARKVTEACQLFEKMVQEGVRASCWTYNI 399

[Close]

BLAST of Sed0021692 vs. ExPASy Swiss-Prot
Match: Q9ZVX5 (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX=3702 GN=At2g16880 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.5e-07
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 80  GFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEV 139
           GFSPD+ TY  LI   ++      A+    EM   GI  NTI L  +L+ +CK +KLDE 
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEA 470

Query: 140 KELLNVVFDKGWEIN 155
             LLN    +G+ ++
Sbjct: 471 HNLLNSAHKRGFIVD 485

[Close]

BLAST of Sed0021692 vs. ExPASy Swiss-Prot
Match: Q940A6 (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 7.1e-07
Identity = 26/82 (31.71%), Postives = 42/82 (51.22%), Query Frame = 0


Query: 69  MQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLE 128
           +Q WD  KR  G  PD+ TY  +I G  +++  +     F+EMM   + PNT++  H++ 
Sbjct: 608 IQFWDDCKRN-GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 667

Query: 129 GVCKGKKLDEVKELLNVVFDKG 151
             C+  +L    EL   +  KG
Sbjct: 668 AYCRSGRLSMALELREDMKHKG 688

[Close]

BLAST of Sed0021692 vs. ExPASy Swiss-Prot
Match: Q6NQ83 (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22470 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06
Identity = 25/71 (35.21%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 80  GFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEV 139
           G  PD+ TY  LI+   ++K  D  +R F E+   G++PNTI    ++ G C+  KL+  
Sbjct: 380 GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA 439

Query: 140 KELLNVVFDKG 151
           KEL   +  +G
Sbjct: 440 KELFQEMVSRG 450

[Close]

BLAST of Sed0021692 vs. ExPASy Swiss-Prot
Match: Q9MAG8 (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana OX=3702 GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-06
Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 62  KLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTI 121
           K  +++ M+   S+   FG  PD  TY  LIHG  +S CFD A++ F+EM+   + P  +
Sbjct: 130 KCGELEKMKERLSSIDEFG-KPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGV 189

Query: 122 ILEHMLEGVCKGKKLDEVKELLNVVFD 149
               ++ G+CK  +   VKE L +  D
Sbjct: 190 TFGTLIHGLCKDSR---VKEALKMKHD 212

[Close]

BLAST of Sed0021692 vs. ExPASy TrEMBL
Match: A0A5D3E5Z9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006320 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 6.4e-35
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 62  KLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTI 121
           KLRDV+ MQAW SAK+AF FSPDL+TYEALIHGSV+SKCFDFAV+CFEEMMLS IVPN I
Sbjct: 197 KLRDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAVKCFEEMMLSDIVPNAI 256

Query: 122 ILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN 155
           ILE+MLEG+CK K  DEVK+ LNVV D GWEIN
Sbjct: 257 ILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIN 289

[Close]

BLAST of Sed0021692 vs. ExPASy TrEMBL
Match: A0A1S3CS56 (pentatricopeptide repeat-containing protein At3g09060-like OS=Cucumis melo OX=3656 GN=LOC103503719 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 6.4e-35
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 62  KLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTI 121
           KLRDV+ MQAW SAK+AF FSPDL+TYEALIHGSV+SKCFDFAV+CFEEMMLS IVPN I
Sbjct: 197 KLRDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAVKCFEEMMLSDIVPNAI 256

Query: 122 ILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN 155
           ILE+MLEG+CK K  DEVK+ LNVV D GWEIN
Sbjct: 257 ILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIN 289

[Close]

BLAST of Sed0021692 vs. ExPASy TrEMBL
Match: A0A6J1D545 (pentatricopeptide repeat-containing protein At3g48810-like OS=Momordica charantia OX=3673 GN=LOC111017344 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 72/99 (72.73%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 56  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSG 115
           ++ ++ +L DVD MQAW SAKRAFGFSPDLQTYE+LI+GSV SKCFDFAVRCFEEMM+SG
Sbjct: 203 FISAFARLCDVDSMQAWYSAKRAFGFSPDLQTYESLIYGSVRSKCFDFAVRCFEEMMISG 262

Query: 116 IVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN 155
           IVPN IILE+M+EG+CK K  +EVK+ LN+VFD GWEI+
Sbjct: 263 IVPNKIILENMIEGLCKRKNFEEVKKFLNIVFDNGWEID 301

[Close]

BLAST of Sed0021692 vs. ExPASy TrEMBL
Match: A0A6J1II25 (pentatricopeptide repeat-containing protein At2g37230-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476476 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.5e-33
Identity = 75/105 (71.43%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 56  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSG 115
           ++ ++ KLRDV+ M+AW SAKRAF FS DL+TYEALIHGSV SKCFDFAVRCF+EMMLSG
Sbjct: 191 FISAFAKLRDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVNSKCFDFAVRCFDEMMLSG 250

Query: 116 IVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEI--NLSEK 159
           IVPN IIL++MLEG CK K LDE+K+ L VV DKGWEI  N+ EK
Sbjct: 251 IVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEIKWNVVEK 295

[Close]

BLAST of Sed0021692 vs. ExPASy TrEMBL
Match: A0A0A0LJI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889090 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 56  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSG 115
           ++ ++ KL DV+ MQAW SAK+AF FSPDL+TYEALIHGSV+S CFDF V+CFEEM+LS 
Sbjct: 191 FISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGVKCFEEMILSD 250

Query: 116 IVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEI--NLSEK 159
           IVPNTIILE+MLEG+CK K  DEVK+ LNVV D GWEI  N+ EK
Sbjct: 251 IVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEK 295

[Close]

BLAST of Sed0021692 vs. TAIR 10
Match: AT4G01570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-09
Identity = 32/94 (34.04%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 67  DFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHM 126
           D +  WD  K   G  PD  TY  LI G  +S   D A+R + EM  +G VP+TI+   +
Sbjct: 307 DALIVWDELK-VSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCL 366

Query: 127 LEGVCKGKKLDEVKELLNVVFDKG-----WEINL 156
           L+G  K +K+ E  +L   +  +G     W  N+
Sbjct: 367 LDGTLKARKVTEACQLFEKMVQEGVRASCWTYNI 399

[Close]

BLAST of Sed0021692 vs. TAIR 10
Match: AT2G16880.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-08
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 80  GFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEV 139
           GFSPD+ TY  LI   ++      A+    EM   GI  NTI L  +L+ +CK +KLDE 
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEA 470

Query: 140 KELLNVVFDKGWEIN 155
             LLN    +G+ ++
Sbjct: 471 HNLLNSAHKRGFIVD 485

[Close]

BLAST of Sed0021692 vs. TAIR 10
Match: AT4G19440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 5.1e-08
Identity = 26/82 (31.71%), Postives = 42/82 (51.22%), Query Frame = 0


Query: 69  MQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLE 128
           +Q WD  KR  G  PD+ TY  +I G  +++  +     F+EMM   + PNT++  H++ 
Sbjct: 595 IQFWDDCKRN-GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 654

Query: 129 GVCKGKKLDEVKELLNVVFDKG 151
             C+  +L    EL   +  KG
Sbjct: 655 AYCRSGRLSMALELREDMKHKG 675

[Close]

BLAST of Sed0021692 vs. TAIR 10
Match: AT4G19440.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 5.1e-08
Identity = 26/82 (31.71%), Postives = 42/82 (51.22%), Query Frame = 0


Query: 69  MQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLE 128
           +Q WD  KR  G  PD+ TY  +I G  +++  +     F+EMM   + PNT++  H++ 
Sbjct: 595 IQFWDDCKRN-GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 654

Query: 129 GVCKGKKLDEVKELLNVVFDKG 151
             C+  +L    EL   +  KG
Sbjct: 655 AYCRSGRLSMALELREDMKHKG 675

[Close]

BLAST of Sed0021692 vs. TAIR 10
Match: AT3G22470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-07
Identity = 25/71 (35.21%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 80  GFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEV 139
           G  PD+ TY  LI+   ++K  D  +R F E+   G++PNTI    ++ G C+  KL+  
Sbjct: 380 GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA 439

Query: 140 KELLNVVFDKG 151
           KEL   +  +G
Sbjct: 440 KELFQEMVSRG 450

The following BLAST results are available for this feature:

BLAST of Sed0021692 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897030.1	2.2e-37	78.79	pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Benin...	[more]
XP_008466249.1	1.3e-34	79.57	PREDICTED: pentatricopeptide repeat-containing protein At3g09060-like [Cucumis m...	[more]
XP_022148798.1	2.3e-34	72.73	pentatricopeptide repeat-containing protein At3g48810-like [Momordica charantia]	[more]
XP_022975914.1	7.3e-33	71.43	pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita...	[more]
KAG7024539.1	2.8e-32	71.72	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]

BLAST of Sed0021692 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZE4	6.5e-08	34.04	Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana OX...	[more]
Q9ZVX5	5.5e-07	38.67	Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX...	[more]
Q940A6	7.1e-07	31.71	Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidop...	[more]
Q6NQ83	2.1e-06	35.21	Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop...	[more]
Q9MAG8	2.7e-06	34.48	Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis th...	[more]

BLAST of Sed0021692 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E5Z9	6.4e-35	79.57	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CS56	6.4e-35	79.57	pentatricopeptide repeat-containing protein At3g09060-like OS=Cucumis melo OX=36...	[more]
A0A6J1D545	1.1e-34	72.73	pentatricopeptide repeat-containing protein At3g48810-like OS=Momordica charanti...	[more]
A0A6J1II25	3.5e-33	71.43	pentatricopeptide repeat-containing protein At2g37230-like isoform X1 OS=Cucurbi...	[more]
A0A0A0LJI4	1.3e-32	69.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889090 PE=4 SV=1	[more]

BLAST of Sed0021692 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01570.1	4.6e-09	34.04	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G16880.1	3.9e-08	38.67	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G19440.1	5.1e-08	31.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G19440.2	5.1e-08	31.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G22470.1	1.5e-07	35.21	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 87..120 e-value: 6.4E-7 score: 27.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 84..118 score: 10.270796
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 66..164 e-value: 7.9E-15 score: 56.6
None	No IPR available	PANTHER	PTHR45613	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 60..155
None	No IPR available	PANTHER	PTHR45613:SF360	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 60..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021692.1	Sed0021692.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding