Sed0021686 (gene) Chayote v1

Overview


Name	Sed0021686
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase
Location	LG04: 8384902 .. 8389567 (+)
RNA-Seq Expression	Sed0021686
Synteny	Sed0021686

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGATATTTTGATTCCTTTACAACGAGGCATTATGTTGGAAGCAATGGAAGGGCATGCGGTTCTGTGTCCAATTTTATATGAAAAACTTCCAGATTATTGCTTTGAATGTGGCTGCATCAGACACTTGACGAAGGAATGTGACACTATTGTTGAAGGGAGATCTATTTTATTTTACAAAATTATGAGTATGGTGACTGGCTTCGTGCCCCTTATGTGAAGAAATCCAGTCAAAAAGCAAAAGAGGATAAGGTTGGATCAACAAGCCATCATAAAGAAGGCTTTGAGAAAAAAAGAAAGCAAAGCAGAACGTTGGGCTGAAGGAGAAAGAAGTGGAAGAGATAGTTGGAGGAAATCTGATCAAAAGGAAAAGGTGATAAGGAGAGTAGGGACAGAAATCTCCAAAAACCTGATTGAGGATTTTGGAAGTGAGCAACACAATTTCAGTGGGATTAAAGCCAAAATCTCAGAAGAGATTATAATGTGTTCTAAGGAAGGAGAAGCTGAAAGAATAATTTCTAAAAAGAAAGCAGAAGAATGCAAGGCTTTGATAGTTGTGGTAAATAATGAGCCTAAAGACTTGATGGAGTCTGTAACCATGGACGGCGTGTCTGAAAAAGGGAAAATCTGAAAATTTCACAGACTTAAAGGAAACTCTACTAACAAAATATTGATGGGACTTGTTGTTTCCTTGGACAAAGGGAAAAGAAAAGCTTGTGAGGAGTTTGATGAGGAAGAAGGTTTGAAGAGGACCCGACTTGAGGTGACATGCAATGAATTTACTCTGGTGGAGGCTGGTAACCAACCCCACCAAGGATTATGAAAATCTTATGCTGGAATGTCCGATGGGTGGGGAGCTCTCGGGCGTTAGCAGATCTGAGGGCTATTTTATACTCTCATCAACCCTATGTATTATTTCTTGTGGAGACTAAATGTAATAATGGAAGAATTATTAGCCTAAGATCTAAGCTGGGCTTTGATCATAGCTATTGTGTGGCTTCTATTGGCCTGAGTGGTGGTTTGGCCTTATTTTGGAATGAAAGTTTAAACATTCATATTTGGTCTACTTCTAGTAACCATATTGATTGTCGAATTGATTGGAATGATAATTTGTTTCGGTTGAATTTATGGTTTCTCCGCCTCTCATGAAAAGCATTTGACATTAGATTTAATACGTCATCTTGAAGATGTTAATAATATGCCCTAACTTATTGGTGGGGATCTTAATGAAGCTATTTGGGAACGTGAGAAACGAGGAGGATCCCCCAACATTTCTTCAGCTATGAATAATATTAGACAAATTGTTGATGAGCTTTGCCTTCGGGATTTAGGCTTTTTAGGGGACTTGTTCACTTGGTGCAACAGATGGTCCAATGGTTTCCCAATTTGGAAAAGATTGGATCGCTTTCTTGGGGATATAGGTTTTTGTTCTCTTTTTCCTAATTCAGAAGTGGCTCATTTGGAATGGTTTGGTTCGGACCATCGACCTATAATTATTTCTCTGGAATGAGATGTGTTAAGTTGAGATTTCAAAGCCCCTCATTTCCATTTTAAGGAATTATGGATTGATGAGGCTGAATGTTTTGATATCATTTATAATAAATGGAGTTTGGGGCAAGAGGACGACCTGGTGAATTCTTTGGAGGGTTCCTTAACCTGTTGTAGGGAAGAGTTATGGGGTTGGGGCAGAAATTTGAAAAAAGAGAAATGAAGAGCTATTCAGAGATTAAGGCTGCTTATCAGAGAGAAATTTGCTAAAGGCAGTCGTGGTGACTTTAGAAGAATTCATACTTCAGAAATGGAGCTTGATAAGGAAATTATAGCTGAAGAAAGATATTGGCATCAATGATCAAGGATTGATTGGCTAAGATGGGGGGACAGAAATACTAGATGGTTTCATTCTAAAGCTTCTCGATGTAAGGCTAAGAATTTAATCAAAGAAGCAAGAGATGATAATGGAGTTCTGACTCGCTCTAAAGATGCCATTAATGAGGTGTTTCGGAGCCACTTTGTTAATTTGTTTAGTTCTAATGAGCCTTCTATAGTCAAGATTGAAAAAGCTCTAGAATTTGTGCCCTGTAGAGTGTCTGGCAGTATGAATGATTCCCTTTGTGCTCCTTTTGTTGAGGAGGAAGTCCGTTGTGCTTTGTTCCAAATGTTTCTGACAAAAGCTCCAGGTCCGGATGGATTTCCATCTTTATTCTATAAAAAAATATTGGAACACAGTTAAGAAGAAAGTGGTTGATTCTTGCCTTGGAGTTTTAAATGATGGAAAATCAATTAAAAGCCTCAATCATACCAACATTGTTTTGATTCCTAAAATCCCTAATCCGATTGAAGTTATCTCTGAATCTCAGCATGCCTTTGTGCCTGGAAGGTGTATTACCGGTTGCCTTATGATGGGTTATGAATGCATGCACCATATTCATTCTAAGAGGAGTGGTAAGGTGGAGCTTATGGCGATGAAGGTTGATATGAGTAAAGCCTATGACAGGGTTGAATGGAGCTTGATAAGGAGTGTTTTGATTCAATTGGGCTTTCGGAAGTCTTGGGTGGAGCTAATCATGGAATGTATAACTTCAGTTAGCTTTTCAATTCTTGTTAACGACCATCAAGGGGATATATTCTACCCTAGAAGGGGGCTTCACCAAGGGGATCTACTATCTCCTTATCTATTTTTATTTTGCTCTGAAAGCTTCTTTTGCTTGATTGAGGAAGCTTAGAGAAGGGGAAGTCTTGTTGGATGCAAAATTGCTAAGCGTAGCCCTTCTATCTCACACTTATTTTTTGCTGATGATAGCTTGCTTTTTTGTAAAGCTTCTGCTATAGAAGTTGGGGTCATAAGAGAAATTCTTAGAATCTATGAAGAAGGGTCTAGTCAGAAAGTGAACTTTTCGAAATCAGTTGTTATCTTTAGCCCAAAAGTTTCGTCTGACTCTCAAAGTTACTTAGCAAGGTGCTTGGGCATGAGATTGGTTCATGATTTGGGTCCTTATTTGGGGTTGCCCTCTCGAATTTCAACCAACAGAATGAGAGATTTAAATTTCTTGAAGGAGAGAGTTCTAGAAGCTGTGAGCGGTTGGAAAAGAAATTTCTTTTCAGCTGCGGGCAAGGAGATTTTAATTAAAGCTGTGGCCCAAGTGATTCCCACTTATATCATGTCCTGCATTCAAGTCCCTAAAACTTTGTGTGCGCACCTTTCTCAATCTATGGCCCAATTTTGGTGGGGGTCTTCTCCCACTAAGTCCAAAATTCATTGGGCTAGTTGGGAAAGACTGTGCATTCCTAAAAATAAGGGTGGCCTCGGCTTCAAGAACCTAGTTGCTTTTAATCAGGCTTTGATTACTAAACAAGCTTGGAGGCTCCTTCATCATCCATATTATTTGGCCGGAAGACTTTACAGAGGGAGGTATTTTCCTGAGGGATCCATCCTTGATGCAAATATGGGCTTTAACCCGTCTTATGTTTGGCGTAGTATTCTCTGGGGAAAAGAGCTTTTGTTGAAAGGGCTTTAAAAAAGAATTGGAAATAGAATTCATACCTGCATTTTTAATTGCCCTTGGATTCCTAGAGATCCTTCTTTTAAAGTAATAACCACTCCTAGCTGAGAAAATTTGCAATTAACTGTTGCTGACCTTTTTCGCCTTCATGGTGGTTGGGATATTAGTAAGCTCAATTCAATTTTATGGCCTGTGGATGTTCACTCAGTTTTGTCCATTCCCATTTGTAAAACGGAGGAGGTGGGTAAATGGATTTGGCATTACTCTAAGGATGATGATTTCAATGTGAGAAGTGCCTATAAGTTGGCGAGCCAGGGCCATTTGGACATGATATCTTCCTTTTTCGAGGTTATGGCTCAGTGGTGGAACCGCTTATGGGGATGATCCTTCCAAATAAAATTAAGTTGTTCATTTGGAGGCTTTCCAATAATTTCATTCCCAACAGAGTTAACCTGGTTGCTAAGCATGTTGATACTCCTATAGAATGTGTTGTGTGTGGAATGGAGATCGAGGATTCAAATCATACCTTTATACGGTGCTGCAGATCCAGGATGATTTGGCAACCTATTTGTCCAGATATTTTTAGGCTTCATGCTGCTTCTACTTTTGAATTTTTTTTTGATATTTGCTAGCGACAAGTTAAGTGAAGCTAAGTTTGAGGTTATGTGTATTGCTCTCTGGGCTATCTGGTTTGACAGAAACAAAACTTTACATGGTGAGAACATTCCTGAAGTTGAGGTGAGAGTGGACTGGATTAATAATTACGTTGCTGAAGTCCATGGGGTTAGTCGAAAGGTAGCCCATAAGCCCTATAAGTGCATCCGCTCCGTGAAGTGTGGAATCCTCCCTTACTGGGTTCTTTAAAGCTCAATGTTGAGGCTGCCGTTTCAGCTGATCGGGTTGGAGTTGGGTTGGGTGCTATCGTTCGTGACCACCAGGGGCGTTGTTGGGCGGCTTCAACAACTTTTCTTCCCCAATGTCTAGACCTAGCTGCTGTGGAAGCTCTTGCCCTCCTATATGGTTTGCAAATGGTGGTTCGAGAAGGCTTTTCTGGTGTCTTAGTTGAATCTGATGCAAAGCTGATAGTTGAAGGGATTGATAACCCTCGGTTGCGCTCCTCTAATTGGGGGGTGATTTTTTGTGAGATCCAAGGAAGTGTTGAATAA

mRNA sequence

ATTGGATATTTTGATTCCTTTACAACGAGGCATTATGTTGGAAGCAATGGAAGGGCATGCGGTTCTGTGTCCAATTTTATATGAAAAACTTCCAGATTATTGCTTTGAATGTGGCTGCATCAGACACTTGACGAAGGAATGTGACACTATTGTTGAAGGGAGATCTATTTTATTTTACAAAATTATGAGTATGGTGACTGGCTTCGTGCCCCTTATGTGAAGAAATCCAGTCAAAAAGCAAAAGAGGATAAGGTTGGATCAACAAGCCATCATAAAGAAGGCTTTGAGAAAAAAAGAAAGCAAAGCAGAACGTTGGGCTGAAGGAGAAAGAAGTGGAAGAGATAGTTGGAGGAAATCTGATCAAAAGGAAAAGGTGATAAGGAGAGTAGGGACAGAAATCTCCAAAAACCTGATTGAGGATTTTGGAAGTGAGCAACACAATTTCAGTGGGATTAAAGCCAAAATCTCAGAAGAGATTATAATGTGTTCTAAGGAAGGAGAAGCTGAAAGAATAATTTCTAAAAAGAAAGCAGAAGAATGCAAGGCTTTGATAGTTGTGGTAAATAATGAGCCTAAAGACTTGATGGAGTCTGTAACCATGGACGGCGTGTCTGAAAAAGGGAAAATCTGAAAATTTCACAGACTTAAAGGAAACTCTACTAACAAAATATTGATGGGACTTGTTGTTTCCTTGGACAAAGGGAAAAGAAAAGCTTGTGAGGAGTTTGATGAGGAAGAAGGTTTGAAGAGGACCCGACTTGAGGTGACATGCAATGAATTTACTCTGGTGGAGGCTGCTTCTCGATGTAAGGCTAAGAATTTAATCAAAGAAGCAAGAGATGATAATGGAGTTCTGACTCGCTCTAAAGATGCCATTAATGAGGTGTTTCGGAGCCACTTTGTTAATTTGTTTAGTTCTAATGAGCCTTCTATAGTCAAGATTGAAAAAGCTCTAGAATTTGTGCCCTGTAGAGTGTCTGGCAGTTATGGCTCAGTGGTGGAACCGCTTATGGGGATGATCCTTCCAAATAAAATTAAGTTGTTCATTTGGAGGCTTTCCAATAATTTCATTCCCAACAGAGTTAACCTGGTTGCTAAGCATGTTGATACTCCTATAGAATGTGTTGTGTGTGGAATGGAGATCGAGGATTCAAATCATACCTTTATACGCGACAAGTTAAGTGAAGCTAAGTTTGAGGTTATGTGTATTGCTCTCTGGGCTATCTGGTTTGACAGAAACAAAACTTTACATGGTGAGAACATTCCTGAAGTTGAGGTGAGAGTGGACTGGATTAATAATTACGTTGCTGAAGTCCATGGGGTTAGTCGAAAGCTCAATGTTGAGGCTGCCGTTTCAGCTGATCGGGTTGGAGTTGGGTTGGGTGCTATCGTTCGTGACCACCAGGGGCGTTGTTGGGCGGCTTCAACAACTTTTCTTCCCCAATGTCTAGACCTAGCTGCTGTGGAAGCTCTTGCCCTCCTATATGGTTTGCAAATGGTGGTTCGAGAAGGCTTTTCTGGTGTCTTAGTTGAATCTGATGCAAAGCTGATAGTTGAAGGGATTGATAACCCTCGGTTGCGCTCCTCTAATTGGGGGGTGATTTTTTGTGAGATCCAAGGAAGTGTTGAATAA

Coding sequence (CDS)

ATGGGACTTGTTGTTTCCTTGGACAAAGGGAAAAGAAAAGCTTGTGAGGAGTTTGATGAGGAAGAAGGTTTGAAGAGGACCCGACTTGAGGTGACATGCAATGAATTTACTCTGGTGGAGGCTGCTTCTCGATGTAAGGCTAAGAATTTAATCAAAGAAGCAAGAGATGATAATGGAGTTCTGACTCGCTCTAAAGATGCCATTAATGAGGTGTTTCGGAGCCACTTTGTTAATTTGTTTAGTTCTAATGAGCCTTCTATAGTCAAGATTGAAAAAGCTCTAGAATTTGTGCCCTGTAGAGTGTCTGGCAGTTATGGCTCAGTGGTGGAACCGCTTATGGGGATGATCCTTCCAAATAAAATTAAGTTGTTCATTTGGAGGCTTTCCAATAATTTCATTCCCAACAGAGTTAACCTGGTTGCTAAGCATGTTGATACTCCTATAGAATGTGTTGTGTGTGGAATGGAGATCGAGGATTCAAATCATACCTTTATACGCGACAAGTTAAGTGAAGCTAAGTTTGAGGTTATGTGTATTGCTCTCTGGGCTATCTGGTTTGACAGAAACAAAACTTTACATGGTGAGAACATTCCTGAAGTTGAGGTGAGAGTGGACTGGATTAATAATTACGTTGCTGAAGTCCATGGGGTTAGTCGAAAGCTCAATGTTGAGGCTGCCGTTTCAGCTGATCGGGTTGGAGTTGGGTTGGGTGCTATCGTTCGTGACCACCAGGGGCGTTGTTGGGCGGCTTCAACAACTTTTCTTCCCCAATGTCTAGACCTAGCTGCTGTGGAAGCTCTTGCCCTCCTATATGGTTTGCAAATGGTGGTTCGAGAAGGCTTTTCTGGTGTCTTAGTTGAATCTGATGCAAAGCTGATAGTTGAAGGGATTGATAACCCTCGGTTGCGCTCCTCTAATTGGGGGGTGATTTTTTGTGAGATCCAAGGAAGTGTTGAATAA

Protein sequence

MGLVVSLDKGKRKACEEFDEEEGLKRTRLEVTCNEFTLVEAASRCKAKNLIKEARDDNGVLTRSKDAINEVFRSHFVNLFSSNEPSIVKIEKALEFVPCRVSGSYGSVVEPLMGMILPNKIKLFIWRLSNNFIPNRVNLVAKHVDTPIECVVCGMEIEDSNHTFIRDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVHGVSRKLNVEAAVSADRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAVEALALLYGLQMVVREGFSGVLVESDAKLIVEGIDNPRLRSSNWGVIFCEIQGSVE

Homology

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BLAST of Sed0021686 vs. NCBI nr
Match: KAA3467625.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 102.8 bits (255), Expect = 5.5e-18
Identity = 72/283 (25.44%), Postives = 109/283 (38.52%), Query Frame = 0


Query: 86   SIVKIEKALEFVPCRVSGSYGSVVEPLMGMILPNKIKLFIWRLSNNFIPNRVNLVAKHVD 145
            S  K+ +  E     +  SY    + L  + LP K+KL IW++S N++P +VNL  + V 
Sbjct: 988  SAYKLLQQFEPTVYALQTSYKEFYKKLWRIDLPLKVKLLIWKISWNYLPTKVNLACRRVT 1047

Query: 146  TPIECVVCGMEIEDSNHTFIRDKLSEA--------------------------------K 205
            +   C  CG   ED NH F    +S+A                                K
Sbjct: 1048 SNTLCPRCGQSAEDMNHLFRECPVSKAVWRNMSDPDFVMFPEAEFIEWLTRVLVLLSLEK 1107

Query: 206  FEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVH------------------ 265
              + C  LW IW DRN  +H E     +  + ++  Y+ E+                   
Sbjct: 1108 CRLYCGLLWVIWEDRNSRMHNERGRSSQEMIKFVIGYIKELDELKSVEQKTMFIEKKWRP 1167

Query: 266  --GVSRKLNVEAAVSADRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAVEALALLYGL 317
              G   K+N + A  A R    LG +VRD +GR   + +          A EALA     
Sbjct: 1168 PPGQMLKINFDGAFEARRKRAALGVVVRDRKGRILLSKSELYNGVESAFAAEALACRLAT 1227

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BLAST of Sed0021686 vs. NCBI nr
Match: XP_042965942.1 (uncharacterized protein LOC122299620 [Carya illinoinensis])

HSP 1 Score: 102.1 bits (253), Expect = 9.4e-18
Identity = 65/268 (24.25%), Postives = 121/268 (45.15%), Query Frame = 0


Query: 102  SGSYGSVVEPLMGMILPNKIKLFIWRLSNNFIPNRVNLVAKHVDTPIECVVCGMEIEDSN 161
            S S  S+ + +  M LP KI++F W+L  + +P  +NL+ +HVD   +C +C  + ED +
Sbjct: 1046 SSSLNSLWKAIWKMKLPLKIRIFAWKLCKDCLPTGLNLIKRHVDIDPKCCLCAEQNEDLS 1105

Query: 162  HTF--------------------------------IRDKLSEAKFEVMCIALWAIWFDRN 221
            H                                  + +K +  + +  C+  W+ W+ RN
Sbjct: 1106 HAIVYCPQLIEFWKGQLPKLFDIQKPILFIDLINHVHNKGTTEELQFFCLIAWSFWYRRN 1165

Query: 222  KTLHGENIPEVEVRVDWINNYVAEVHGVSR---------------------KLNVEAAVS 281
            + +H   +  ++  VD   +  +     S+                     KLNV+ A+ 
Sbjct: 1166 RKIHDLVVLPIKQVVDHALSVQSSFVSCSQQKNPDHIKLNGLWSPPPEGFLKLNVDGALF 1225

Query: 282  ADRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAVEALALLYGLQMVVREGFSGVLVES 316
             D+   G+GA++RD +G    A++       +   +E +A+L GLQ+ ++ G S ++VES
Sbjct: 1226 FDQKKAGIGAVLRDGRGEVILAASKMECYIEEPETIELVAILRGLQLCIQSGISKLVVES 1285

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BLAST of Sed0021686 vs. NCBI nr
Match: KAG8499524.1 (hypothetical protein CXB51_006063 [Gossypium anomalum])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-17
Identity = 63/238 (26.47%), Postives = 110/238 (46.22%), Query Frame = 0


Query: 105 YGSVVEPLMGMILPNKIKLFIWRLSNNFIPNRVNLVAKHVDTPIECVVCGMEIEDSNHTF 164
           YG+  + L  + LPNK+K+ +WR+S N++P RVN+  + + +   C  CG   E  +H F
Sbjct: 304 YGNFYKKLWLLNLPNKVKITLWRISWNYLPTRVNMQYRKLVSNTSCPRCGERAETIDHIF 363

Query: 165 ----IRDKLSEAKFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVHGVS-- 224
               +  +LS  +  + C  LW IW +RN+ +H + I   +  VD+INN++AE+ G+   
Sbjct: 364 RECPVIVELSTHQSRLFCCGLWIIWGERNRIIHEQKISTGQQLVDFINNHIAELDGLEIK 423

Query: 225 ------------------RKLNVEAAVSADRVGVGLGAIVRDHQGRCWAASTTFLPQCLD 284
                              K+N + A  A+      G + R+ +G    + +        
Sbjct: 424 NPAKRKMIVGWSYPPREFVKINFDGAYDANHHQSASGIVARNKEGDVLLSCSEIHHGVTS 483

Query: 285 LAAVEALALLYGLQMVVREGFSGVLVESDAKLIVEGIDNPRLRSSNWGVIFCEIQGSV 319
             A EA+A    +Q+   + +  VL+E D+  I++  +      S  G    +IQ  V
Sbjct: 484 AFAAEAIACRKVVQVGGEQDWLKVLIEGDSFTIIKKCETKSQDHSEIGAYIHDIQQKV 541

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BLAST of Sed0021686 vs. NCBI nr
Match: KAA3487748.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 99.4 bits (246), Expect = 6.1e-17
Identity = 70/283 (24.73%), Postives = 110/283 (38.87%), Query Frame = 0


Query: 86   SIVKIEKALEFVPCRVSGSYGSVVEPLMGMILPNKIKLFIWRLSNNFIPNRVNLVAKHVD 145
            S  K+ +  E     +  SY    + L  + LP K+KL IW++S N++P +VNL  + V 
Sbjct: 727  STYKLLQQFEPTAYALQTSYKEFYKKLWRIDLPLKVKLLIWKISWNYLPTKVNLACRRVT 786

Query: 146  TPIECVVCGMEIEDSNHTFIRDKLSEA--------------------------------K 205
            +   C  CG   ED NH F    +S+A                                K
Sbjct: 787  SNTLCPRCGQSAEDMNHLFRECPVSKAVWRNMLDPDFVMFPEAEFIDWLTKVLVLLSLEK 846

Query: 206  FEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVH------------------ 265
             ++ C  LW IW DRN  ++ E     +  + ++  Y+ E+                   
Sbjct: 847  CKLYCGLLWVIWGDRNSQMYNERGRSSQEMIKFVIGYIKELDELKSVKQKTMFIEKKWRP 906

Query: 266  --GVSRKLNVEAAVSADRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAVEALALLYGL 317
              G   K+N + A  A R    LG +VRD +GR   + +          A +AL      
Sbjct: 907  PPGQMLKINFDGAFEARRKCAALGVVVRDRKGRILLSKSELYNGVEYAFAAKALVCRLAT 966

[Close]

BLAST of Sed0021686 vs. NCBI nr
Match: XP_042950144.1 (uncharacterized protein LOC122282259 [Carya illinoinensis])

HSP 1 Score: 96.7 bits (239), Expect = 3.9e-16
Identity = 64/268 (23.88%), Postives = 118/268 (44.03%), Query Frame = 0


Query: 102 SGSYGSVVEPLMGMILPNKIKLFIWRLSNNFIPNRVNLVAKHVDTPIECVVCGMEIEDSN 161
           S S  S+ + +  M LP KI++F W+L  + +P  +NL+ KHVD   +C +C  + ED +
Sbjct: 513 SSSLNSLWKAIWKMKLPLKIRIFAWKLCKDCLPIGLNLIKKHVDIDPKCCLCAEQNEDLS 572

Query: 162 HTF--------------------------------IRDKLSEAKFEVMCIALWAIWFDRN 221
                                              + +K +  + +  C+  W  W+ RN
Sbjct: 573 QAIVYYPQLIEFWKGQLPKLFDIHKPLLFIDLINHVHNKGTTEELQFFCLIAWRFWYRRN 632

Query: 222 KTLHGENIPEVEVRVDWINNYVAEVHGVSR---------------------KLNVEAAVS 281
           +  H   +  ++  VD   +  +     S+                     KLN++ A+ 
Sbjct: 633 RKTHDLVVLPIKQVVDHALSVQSSFVSCSQQKNPDHIKLNGLWSPPPEGFLKLNIDGALF 692

Query: 282 ADRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAVEALALLYGLQMVVREGFSGVLVES 316
            D+   G+GA++RD +G    A++       +   +E +A+L GLQ+ ++ G S ++VES
Sbjct: 693 FDQKKAGIGAVLRDGRGEVILAASKMECYIEEPETIELVAILRGLQLCIQSGISKLVVES 752

[Close]

BLAST of Sed0021686 vs. ExPASy TrEMBL
Match: A0A5B6VEN5 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_002620 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-18
Identity = 72/283 (25.44%), Postives = 109/283 (38.52%), Query Frame = 0


Query: 86   SIVKIEKALEFVPCRVSGSYGSVVEPLMGMILPNKIKLFIWRLSNNFIPNRVNLVAKHVD 145
            S  K+ +  E     +  SY    + L  + LP K+KL IW++S N++P +VNL  + V 
Sbjct: 988  SAYKLLQQFEPTVYALQTSYKEFYKKLWRIDLPLKVKLLIWKISWNYLPTKVNLACRRVT 1047

Query: 146  TPIECVVCGMEIEDSNHTFIRDKLSEA--------------------------------K 205
            +   C  CG   ED NH F    +S+A                                K
Sbjct: 1048 SNTLCPRCGQSAEDMNHLFRECPVSKAVWRNMSDPDFVMFPEAEFIEWLTRVLVLLSLEK 1107

Query: 206  FEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVH------------------ 265
              + C  LW IW DRN  +H E     +  + ++  Y+ E+                   
Sbjct: 1108 CRLYCGLLWVIWEDRNSRMHNERGRSSQEMIKFVIGYIKELDELKSVEQKTMFIEKKWRP 1167

Query: 266  --GVSRKLNVEAAVSADRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAVEALALLYGL 317
              G   K+N + A  A R    LG +VRD +GR   + +          A EALA     
Sbjct: 1168 PPGQMLKINFDGAFEARRKRAALGVVVRDRKGRILLSKSELYNGVESAFAAEALACRLAT 1227

[Close]

BLAST of Sed0021686 vs. ExPASy TrEMBL
Match: A0A5B6X1R5 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_031559 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-17
Identity = 70/283 (24.73%), Postives = 110/283 (38.87%), Query Frame = 0


Query: 86   SIVKIEKALEFVPCRVSGSYGSVVEPLMGMILPNKIKLFIWRLSNNFIPNRVNLVAKHVD 145
            S  K+ +  E     +  SY    + L  + LP K+KL IW++S N++P +VNL  + V 
Sbjct: 727  STYKLLQQFEPTAYALQTSYKEFYKKLWRIDLPLKVKLLIWKISWNYLPTKVNLACRRVT 786

Query: 146  TPIECVVCGMEIEDSNHTFIRDKLSEA--------------------------------K 205
            +   C  CG   ED NH F    +S+A                                K
Sbjct: 787  SNTLCPRCGQSAEDMNHLFRECPVSKAVWRNMLDPDFVMFPEAEFIDWLTKVLVLLSLEK 846

Query: 206  FEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWINNYVAEVH------------------ 265
             ++ C  LW IW DRN  ++ E     +  + ++  Y+ E+                   
Sbjct: 847  CKLYCGLLWVIWGDRNSQMYNERGRSSQEMIKFVIGYIKELDELKSVKQKTMFIEKKWRP 906

Query: 266  --GVSRKLNVEAAVSADRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAVEALALLYGL 317
              G   K+N + A  A R    LG +VRD +GR   + +          A +AL      
Sbjct: 907  PPGQMLKINFDGAFEARRKCAALGVVVRDRKGRILLSKSELYNGVEYAFAAKALVCRLAT 966

[Close]

BLAST of Sed0021686 vs. ExPASy TrEMBL
Match: A0A2N9IUU4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56027 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.5e-17
Identity = 61/223 (27.35%), Postives = 106/223 (47.53%), Query Frame = 0


Query: 117 LPNKIKLFIWRLSNNFIPNRVNLVAKHVDTPIECVVCGMEIEDSNHTF---IRDKLSEAK 176
           LP KI+ F+WRLS N +P R NLV +++ +P+EC +CG   E + H F   I  +  E  
Sbjct: 157 LPRKIQSFVWRLSRNILPTRDNLVKRNISSPMECPICGAASETTKHIFGQCIYARKGEMA 216

Query: 177 FEVMCIALWAIWFDRNKTLHGENIPEVEVRV-----DWINNY-------VAEVHGVSR-- 236
            +++ +  W++W  RN  +   ++ ++  +V      +I  +       V+ V  ++R  
Sbjct: 217 LKIVTVVSWSLWNVRNSAVF-RDVVKIPAKVFPDAMKYIQEFTEANALSVSFVPPIARNK 276

Query: 237 -----------KLNVEAAVSADRVGVGLGAIVRDHQGRCWAASTTFLPQCLDLAAVEALA 296
                      K+N++ AV AD   VG+G ++R+ QG    A    L   LD    EALA
Sbjct: 277 IVWSAPLEGWYKVNMDGAVFADLGKVGVGVVIRNEQGEFLGAMCELLDVGLDATDGEALA 336

Query: 297 LLYGLQMVVREGFSGVLVESDAKLIVEGIDNPRLRSSNWGVIF 312
            L  ++         +L E D   ++  + +P   ++  G I+
Sbjct: 337 ALRAIEFAAEVCPFSMLFEGDCLQVIRALQSPEYDAARVGHIY 378

[Close]

BLAST of Sed0021686 vs. ExPASy TrEMBL
Match: A0A5B6VBQ8 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_001662 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-16
Identity = 61/227 (26.87%), Postives = 102/227 (44.93%), Query Frame = 0


Query: 101 VSGSYGSVVEPLMGMILPNKIKLFIWRLSNNFIPNRVNLVAKHVDTPIECVVCGMEIEDS 160
           V   Y    + L  + LP KIK+  W++S N++P R N+  + +   + C  CG  +E+ 
Sbjct: 590 VQADYKKFYKKLWLLHLPTKIKITTWKISWNYLPTRTNMQHRKLSNVVICPRCGQGVENI 649

Query: 161 NHTFIRDKLSEA------------KFEVMCIALWAIWFDRNKTLHGENIPEVEVRVDWIN 220
           NH F    +S +            + E+ C ALWAIW DRNK +H +     +    +IN
Sbjct: 650 NHLFRECPISRSWLIWVFEVTSIPQREMFCCALWAIWGDRNKLVHEKVSRSGKEIARFIN 709

Query: 221 NYVAEVHGVSRKL--------------------NVEAAVSADRVGVGLGAIVRDHQGRCW 280
            YV+++ GV  KL                    N +AA   +     +G + R+ +G   
Sbjct: 710 CYVSKIKGVEEKLPKSHSEVQKWKRPLRNAIKVNFDAAFDTNCKKSAVGIVARNSEGEIL 769

Query: 281 AASTTFLPQCLDLAAVEALALLYGLQMVVREGFSGVLVESDAKLIVE 296
            + +    Q     A EA+A    LQ+ V   ++  ++E DA L+++
Sbjct: 770 VSLSKIFQQVESPFAAEAIACRTALQISVDLQWTETIIEGDALLVIK 816

[Close]

BLAST of Sed0021686 vs. ExPASy TrEMBL
Match: A0A5B6UF59 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_018871 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-15
Identity = 63/244 (25.82%), Postives = 105/244 (43.03%), Query Frame = 0


Query: 104  SYGSVVEPLMGMILPNKIKLFIWRLSNNFIPNRVNLVAKHVDTPIECVVCGMEIEDSNHT 163
            SY  V + L  + LP KIKL IW+++ NF+P R NL  + +     C  CG   E  +H 
Sbjct: 860  SYRKVYKKLRLLNLPTKIKLTIWKITWNFLPTRANLQRRRLLADPSCPKCGERAETVDHL 919

Query: 164  F--------------------------------IRDKLSEAKFEVMCIALWAIWFDRNKT 223
            F                                + ++++  +  + C ALWAIW D N  
Sbjct: 920  FRECPATVEVWSELQFREEIISDNRDFEQWLIWVFEQVNLHQCRIFCCALWAIWGDWNWR 979

Query: 224  LHGENIPEVEVRVDWINNYVAEVHGVSRKLNVEAAVSADRVGVGLGAIVRDHQGRCWAAS 283
            +H + +       ++I NY+AE+   S K+NV+ A  +       G +VRD++G    + 
Sbjct: 980  IHNKKVSTGAEIGNFIINYLAEIDD-SVKINVDGAFDSHNNISASGVVVRDNEGSVLLSW 1039

Query: 284  TTFLPQCLDLAAVEALALLYGLQMVVREGFSGVLVESDAKLIVEGIDNPRLRSSNWGVIF 316
            +            EA+A    +Q+ V  G+  +++E D+  I++   N     S  G   
Sbjct: 1040 SKIHKGVHSAFEAEAVACREAVQIGVEHGWPKIIIEGDSLTIIKKCQNQDRDRSMLGAYI 1099

The following BLAST results are available for this feature:

BLAST of Sed0021686 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA3467625.1	5.5e-18	25.44	reverse transcriptase [Gossypium australe]	[more]
XP_042965942.1	9.4e-18	24.25	uncharacterized protein LOC122299620 [Carya illinoinensis]	[more]
KAG8499524.1	1.2e-17	26.47	hypothetical protein CXB51_006063 [Gossypium anomalum]	[more]
KAA3487748.1	6.1e-17	24.73	reverse transcriptase [Gossypium australe]	[more]
XP_042950144.1	3.9e-16	23.88	uncharacterized protein LOC122282259 [Carya illinoinensis]	[more]

BLAST of Sed0021686 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0021686 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5B6VEN5	2.7e-18	25.44	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_002620 PE=4 SV=1	[more]
A0A5B6X1R5	2.9e-17	24.73	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_031559 PE=4 SV=1	[more]
A0A2N9IUU4	6.5e-17	27.35	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56027 PE=4 SV=1	[more]
A0A5B6VBQ8	1.9e-16	26.87	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_001662 PE=4 SV=1	[more]
A0A5B6UF59	3.6e-15	25.82	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_018871 PE=4 SV=1	[more]

BLAST of Sed0021686 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 117..166 e-value: 1.7E-7 score: 31.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 217..315 e-value: 4.9E-6 score: 28.6
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 222..307 e-value: 5.7E-12 score: 45.5
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 179..315
None	No IPR available	PANTHER	PTHR47074:SF3	OS07G0513450 PROTEIN	coord: 179..315

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021686.1	Sed0021686.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity