Sed0021664 (gene) Chayote v1

Overview
NameSed0021664
Typegene
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L44
LocationLG06: 34733886 .. 34734404 (+)
RNA-Seq ExpressionSed0021664
SyntenySed0021664
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAATCTTCTGACCAAATCCCTCCGTCCAAACGCCGATTCAATTTTCTCTTCACTTGCTTCGGATCTTCCCGCAAAGTTCCGGCGACCGTCCCACCGGACCGTCCGGTTCGGTACCGGTTCAAGAAATCTTCTGCAACTGTACCGGTCGACGCCGCCGTCTCGGTTTCGCCGGAGTTCAAGAATCCGCCGATTGCGTCCATCCCTCCGGTATTCAGAACAGAGATCGTCGAGACGAGAGACCCAATTCGATTAGATTCCACGGCGGAGAGATTTCCTCCGGCGAAAAGAACCGCAGCGTCGTTGCACTCCGTCGATTCTCCCTCCCGGCGACCTAACCGCCAAAAAGATTTGAAAGAAACGGTCGATCCTCTCCCCGCCGTAGAAACCCCTGCGCCCCCGAGGAAGCTAGAGGCGGCGATTGTGATTGTTGCGGTGGCGGTTGTGGTGCTGTGGGGGCGAATCGGCGCGATACTCTGCATCACGGCGCTGCTCTGTTTGTGCCGCCGATTGTGA

mRNA sequence

ATGGCGGAATCTTCTGACCAAATCCCTCCGTCCAAACGCCGATTCAATTTTCTCTTCACTTGCTTCGGATCTTCCCGCAAAGTTCCGGCGACCGTCCCACCGGACCGTCCGGTTCGGTACCGGTTCAAGAAATCTTCTGCAACTGTACCGGTCGACGCCGCCGTCTCGGTTTCGCCGGAGTTCAAGAATCCGCCGATTGCGTCCATCCCTCCGGTATTCAGAACAGAGATCGTCGAGACGAGAGACCCAATTCGATTAGATTCCACGGCGGAGAGATTTCCTCCGGCGAAAAGAACCGCAGCGTCGTTGCACTCCGTCGATTCTCCCTCCCGGCGACCTAACCGCCAAAAAGATTTGAAAGAAACGGTCGATCCTCTCCCCGCCGTAGAAACCCCTGCGCCCCCGAGGAAGCTAGAGGCGGCGATTGTGATTGTTGCGGTGGCGGTTGTGGTGCTGTGGGGGCGAATCGGCGCGATACTCTGCATCACGGCGCTGCTCTGTTTGTGCCGCCGATTGTGA

Coding sequence (CDS)

ATGGCGGAATCTTCTGACCAAATCCCTCCGTCCAAACGCCGATTCAATTTTCTCTTCACTTGCTTCGGATCTTCCCGCAAAGTTCCGGCGACCGTCCCACCGGACCGTCCGGTTCGGTACCGGTTCAAGAAATCTTCTGCAACTGTACCGGTCGACGCCGCCGTCTCGGTTTCGCCGGAGTTCAAGAATCCGCCGATTGCGTCCATCCCTCCGGTATTCAGAACAGAGATCGTCGAGACGAGAGACCCAATTCGATTAGATTCCACGGCGGAGAGATTTCCTCCGGCGAAAAGAACCGCAGCGTCGTTGCACTCCGTCGATTCTCCCTCCCGGCGACCTAACCGCCAAAAAGATTTGAAAGAAACGGTCGATCCTCTCCCCGCCGTAGAAACCCCTGCGCCCCCGAGGAAGCTAGAGGCGGCGATTGTGATTGTTGCGGTGGCGGTTGTGGTGCTGTGGGGGCGAATCGGCGCGATACTCTGCATCACGGCGCTGCTCTGTTTGTGCCGCCGATTGTGA

Protein sequence

MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVRYRFKKSSATVPVDAAVSVSPEFKNPPIASIPPVFRTEIVETRDPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAPPRKLEAAIVIVAVAVVVLWGRIGAILCITALLCLCRRL
Homology
BLAST of Sed0021664 vs. NCBI nr
Match: XP_022949237.1 (uncharacterized protein LOC111452650 [Cucurbita moschata])

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-30
Identity = 108/217 (49.77%), Postives = 126/217 (58.06%), Query Frame = 0

Query: 1   MAESSDQIPPSKRRFNFLFTCFGSSRKV-----PATVPPDRPV---RYRFKKSSATVPVD 60
           MAE+S+++ PSKR  +FL  CFGSS KV     P T   D  +   R+RFKKSSATVP+D
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPID 60

Query: 61  AAV-----------SVSPEFKNPP----IASIPPVFRTEIVETRDPI----RLDSTAERF 120
            AV           S SPEFK PP    I S  P  RT+IVE   P     + +ST   F
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQPWKKTESTRSDF 120

Query: 121 -PPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAP----------------PR 173
             PAKRTAA LHS+  PSRR NRQKD K+TV  L AV+TP P                P 
Sbjct: 121 LTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPA 180

BLAST of Sed0021664 vs. NCBI nr
Match: KAG6606901.1 (60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 4.4e-30
Identity = 108/217 (49.77%), Postives = 127/217 (58.53%), Query Frame = 0

Query: 1   MAESSDQIPPSKRRFNFLFTCFGSSRKV-----PATVPPDRPV---RYRFKKSSATVPVD 60
           MAE+S+++ PSKR  +FL  CFGSS KV     P T   D  +   R+RFKKSSATVP+D
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRWDSRIPSPRFRFKKSSATVPID 60

Query: 61  AAV-----------SVSPEFKNPP----IASIPPVFRTEIVETRDPI----RLDSTA-ER 120
            AV           S SPEFK PP    I S  P  RT+IVE   P     + +ST  + 
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQTWKKTESTRYDS 120

Query: 121 FPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAP----------------PR 173
             PAKRTAA LHS+  PSRR NRQKDLK+TV  L AV+TP P                P 
Sbjct: 121 LTPAKRTAALLHSISLPSRRLNRQKDLKKTVSHLSAVKTPTPTSSERRKPADKAPMNSPA 180

BLAST of Sed0021664 vs. NCBI nr
Match: KAA0052773.1 (60S ribosomal protein L44 [Cucumis melo var. makuwa] >TYK04183.1 60S ribosomal protein L44 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 9.8e-22
Identity = 90/223 (40.36%), Postives = 116/223 (52.02%), Query Frame = 0

Query: 1   MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVD 60
           MA+SS + PPSK  F FLFTCF SS K+PA  P     R        +RFKKSSATVPVD
Sbjct: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60

Query: 61  AA------VSVSPEFKNPPIASI----PPVFRTEIV-----------ETR---DPIRLDS 120
            A      +S SP+FK PP  S+     P    EIV           +TR   +  + + 
Sbjct: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF 120

Query: 121 TAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAV 173
           T ++  P ++ AASLHSV  PS+   RQKD K +V                    P P +
Sbjct: 121 TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL 180

BLAST of Sed0021664 vs. NCBI nr
Match: KGN58547.1 (hypothetical protein Csa_002056 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 85/220 (38.64%), Postives = 114/220 (51.82%), Query Frame = 0

Query: 1   MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVD 60
           MA+SS+ IPPSK   +FLF+CF SS K+P         R        +RFKKSSATVPVD
Sbjct: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60

Query: 61  AA------VSVSPEF-KNPPIASI---PPVFRTEIV--------ETR---DPIRLDSTAE 120
            A      +S  PEF K+PP++ I    P    EIV        +TR      + + T +
Sbjct: 61  VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQSNFTTK 120

Query: 121 RFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAVETP 173
           +  P ++TAA LHSV  PS++  RQK  K+ V                    P P + T 
Sbjct: 121 KLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPTY 180

BLAST of Sed0021664 vs. NCBI nr
Match: XP_022934627.1 (uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934628.1 uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934629.1 uncharacterized protein LOC111441760 [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-14
Identity = 84/220 (38.18%), Postives = 106/220 (48.18%), Query Frame = 0

Query: 1   MAESSDQIPPSKRRFNFLFTCFGSSRKV------PATVPPDR--PVRYRFKKSSATVPVD 60
           MAESSD     K R +FLF CF SS  V      P   P  R   +R+RFKKSSATVP+D
Sbjct: 1   MAESSD-----KPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60

Query: 61  AAV------SVSPEFKNPPIASIPPVFRTEIV------------------ETRDPIRLDS 120
           AAV      S+SPEF  PP    PP+ + EI+                   T+   + +S
Sbjct: 61  AAVPCHDELSLSPEFNTPP---PPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSES 120

Query: 121 TAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAV----------------ETP 173
           T       K+T+ SLHS          +K LK+++  LP                   T 
Sbjct: 121 TQSNSTAEKKTSPSLHS----------EKGLKKSISHLPTAAAALTTSLPSSDRWKPPTN 180

BLAST of Sed0021664 vs. ExPASy TrEMBL
Match: A0A6J1GBH7 (uncharacterized protein LOC111452650 OS=Cucurbita moschata OX=3662 GN=LOC111452650 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 108/217 (49.77%), Postives = 126/217 (58.06%), Query Frame = 0

Query: 1   MAESSDQIPPSKRRFNFLFTCFGSSRKV-----PATVPPDRPV---RYRFKKSSATVPVD 60
           MAE+S+++ PSKR  +FL  CFGSS KV     P T   D  +   R+RFKKSSATVP+D
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPID 60

Query: 61  AAV-----------SVSPEFKNPP----IASIPPVFRTEIVETRDPI----RLDSTAERF 120
            AV           S SPEFK PP    I S  P  RT+IVE   P     + +ST   F
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQPWKKTESTRSDF 120

Query: 121 -PPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAP----------------PR 173
             PAKRTAA LHS+  PSRR NRQKD K+TV  L AV+TP P                P 
Sbjct: 121 LTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPA 180

BLAST of Sed0021664 vs. ExPASy TrEMBL
Match: A0A5A7UA28 (60S ribosomal protein L44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00090 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.8e-22
Identity = 90/223 (40.36%), Postives = 116/223 (52.02%), Query Frame = 0

Query: 1   MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVD 60
           MA+SS + PPSK  F FLFTCF SS K+PA  P     R        +RFKKSSATVPVD
Sbjct: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60

Query: 61  AA------VSVSPEFKNPPIASI----PPVFRTEIV-----------ETR---DPIRLDS 120
            A      +S SP+FK PP  S+     P    EIV           +TR   +  + + 
Sbjct: 61  VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF 120

Query: 121 TAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAV 173
           T ++  P ++ AASLHSV  PS+   RQKD K +V                    P P +
Sbjct: 121 TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL 180

BLAST of Sed0021664 vs. ExPASy TrEMBL
Match: A0A0A0LCZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680630 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.4e-18
Identity = 85/220 (38.64%), Postives = 114/220 (51.82%), Query Frame = 0

Query: 1   MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVD 60
           MA+SS+ IPPSK   +FLF+CF SS K+P         R        +RFKKSSATVPVD
Sbjct: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60

Query: 61  AA------VSVSPEF-KNPPIASI---PPVFRTEIV--------ETR---DPIRLDSTAE 120
            A      +S  PEF K+PP++ I    P    EIV        +TR      + + T +
Sbjct: 61  VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQSNFTTK 120

Query: 121 RFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAVETP 173
           +  P ++TAA LHSV  PS++  RQK  K+ V                    P P + T 
Sbjct: 121 KLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPTY 180

BLAST of Sed0021664 vs. ExPASy TrEMBL
Match: A0A6J1F3C2 (uncharacterized protein LOC111441760 OS=Cucurbita moschata OX=3662 GN=LOC111441760 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 84/220 (38.18%), Postives = 106/220 (48.18%), Query Frame = 0

Query: 1   MAESSDQIPPSKRRFNFLFTCFGSSRKV------PATVPPDR--PVRYRFKKSSATVPVD 60
           MAESSD     K R +FLF CF SS  V      P   P  R   +R+RFKKSSATVP+D
Sbjct: 1   MAESSD-----KPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60

Query: 61  AAV------SVSPEFKNPPIASIPPVFRTEIV------------------ETRDPIRLDS 120
           AAV      S+SPEF  PP    PP+ + EI+                   T+   + +S
Sbjct: 61  AAVPCHDELSLSPEFNTPP---PPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSES 120

Query: 121 TAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAV----------------ETP 173
           T       K+T+ SLHS          +K LK+++  LP                   T 
Sbjct: 121 TQSNSTAEKKTSPSLHS----------EKGLKKSISHLPTAAAALTTSLPSSDRWKPPTN 180

BLAST of Sed0021664 vs. ExPASy TrEMBL
Match: A0A6J1IZW6 (uncharacterized protein LOC111481455 OS=Cucurbita maxima OX=3661 GN=LOC111481455 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 83/217 (38.25%), Postives = 106/217 (48.85%), Query Frame = 0

Query: 1   MAESSDQIPPSKRRFNFLFTCFGSS-----RKVPATVPPDR---PVRYRFKKSSATVPVD 60
           MAESSD     K R +FLF CF SS     +K      P+R    +R+RFKK SATVP+D
Sbjct: 1   MAESSD-----KPRLHFLFRCFRSSPNVQRQKAQQIASPNRRTPSLRFRFKKCSATVPLD 60

Query: 61  AAV------SVSPEFKNPPIASIPPVFRTEIVET-------------RDPIRLDSTAERF 120
           AAV      S SPEF  PP  S  P+    IV++              +  + + T E+ 
Sbjct: 61  AAVPCHDELSFSPEFNTPPPPS--PIKGEIIVDSGCKTIKQSKTRKKSESTQSNPTVEKL 120

Query: 121 PPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLP------------------AVETPAPP 173
           PPAK+T+ SLHS          +K LK+++  LP                     T +P 
Sbjct: 121 PPAKKTSPSLHS----------EKGLKKSISHLPIAVADADPTTSLASSDSWKAPTNSPT 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022949237.13.4e-3049.77uncharacterized protein LOC111452650 [Cucurbita moschata][more]
KAG6606901.14.4e-3049.7760S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia][more]
KAA0052773.19.8e-2240.3660S ribosomal protein L44 [Cucumis melo var. makuwa] >TYK04183.1 60S ribosomal p... [more]
KGN58547.11.1e-1738.64hypothetical protein Csa_002056 [Cucumis sativus][more]
XP_022934627.14.4e-1438.18uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934628.1 unchar... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GBH71.6e-3049.77uncharacterized protein LOC111452650 OS=Cucurbita moschata OX=3662 GN=LOC1114526... [more]
A0A5A7UA284.8e-2240.3660S ribosomal protein L44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0LCZ25.4e-1838.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680630 PE=4 SV=1[more]
A0A6J1F3C22.1e-1438.18uncharacterized protein LOC111441760 OS=Cucurbita moschata OX=3662 GN=LOC1114417... [more]
A0A6J1IZW62.8e-1438.25uncharacterized protein LOC111481455 OS=Cucurbita maxima OX=3661 GN=LOC111481455... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0021664.1Sed0021664.1mRNA