Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAATCTTCTGACCAAATCCCTCCGTCCAAACGCCGATTCAATTTTCTCTTCACTTGCTTCGGATCTTCCCGCAAAGTTCCGGCGACCGTCCCACCGGACCGTCCGGTTCGGTACCGGTTCAAGAAATCTTCTGCAACTGTACCGGTCGACGCCGCCGTCTCGGTTTCGCCGGAGTTCAAGAATCCGCCGATTGCGTCCATCCCTCCGGTATTCAGAACAGAGATCGTCGAGACGAGAGACCCAATTCGATTAGATTCCACGGCGGAGAGATTTCCTCCGGCGAAAAGAACCGCAGCGTCGTTGCACTCCGTCGATTCTCCCTCCCGGCGACCTAACCGCCAAAAAGATTTGAAAGAAACGGTCGATCCTCTCCCCGCCGTAGAAACCCCTGCGCCCCCGAGGAAGCTAGAGGCGGCGATTGTGATTGTTGCGGTGGCGGTTGTGGTGCTGTGGGGGCGAATCGGCGCGATACTCTGCATCACGGCGCTGCTCTGTTTGTGCCGCCGATTGTGA
mRNA sequence
ATGGCGGAATCTTCTGACCAAATCCCTCCGTCCAAACGCCGATTCAATTTTCTCTTCACTTGCTTCGGATCTTCCCGCAAAGTTCCGGCGACCGTCCCACCGGACCGTCCGGTTCGGTACCGGTTCAAGAAATCTTCTGCAACTGTACCGGTCGACGCCGCCGTCTCGGTTTCGCCGGAGTTCAAGAATCCGCCGATTGCGTCCATCCCTCCGGTATTCAGAACAGAGATCGTCGAGACGAGAGACCCAATTCGATTAGATTCCACGGCGGAGAGATTTCCTCCGGCGAAAAGAACCGCAGCGTCGTTGCACTCCGTCGATTCTCCCTCCCGGCGACCTAACCGCCAAAAAGATTTGAAAGAAACGGTCGATCCTCTCCCCGCCGTAGAAACCCCTGCGCCCCCGAGGAAGCTAGAGGCGGCGATTGTGATTGTTGCGGTGGCGGTTGTGGTGCTGTGGGGGCGAATCGGCGCGATACTCTGCATCACGGCGCTGCTCTGTTTGTGCCGCCGATTGTGA
Coding sequence (CDS)
ATGGCGGAATCTTCTGACCAAATCCCTCCGTCCAAACGCCGATTCAATTTTCTCTTCACTTGCTTCGGATCTTCCCGCAAAGTTCCGGCGACCGTCCCACCGGACCGTCCGGTTCGGTACCGGTTCAAGAAATCTTCTGCAACTGTACCGGTCGACGCCGCCGTCTCGGTTTCGCCGGAGTTCAAGAATCCGCCGATTGCGTCCATCCCTCCGGTATTCAGAACAGAGATCGTCGAGACGAGAGACCCAATTCGATTAGATTCCACGGCGGAGAGATTTCCTCCGGCGAAAAGAACCGCAGCGTCGTTGCACTCCGTCGATTCTCCCTCCCGGCGACCTAACCGCCAAAAAGATTTGAAAGAAACGGTCGATCCTCTCCCCGCCGTAGAAACCCCTGCGCCCCCGAGGAAGCTAGAGGCGGCGATTGTGATTGTTGCGGTGGCGGTTGTGGTGCTGTGGGGGCGAATCGGCGCGATACTCTGCATCACGGCGCTGCTCTGTTTGTGCCGCCGATTGTGA
Protein sequence
MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVRYRFKKSSATVPVDAAVSVSPEFKNPPIASIPPVFRTEIVETRDPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAPPRKLEAAIVIVAVAVVVLWGRIGAILCITALLCLCRRL
Homology
BLAST of Sed0021664 vs. NCBI nr
Match:
XP_022949237.1 (uncharacterized protein LOC111452650 [Cucurbita moschata])
HSP 1 Score: 142.5 bits (358), Expect = 3.4e-30
Identity = 108/217 (49.77%), Postives = 126/217 (58.06%), Query Frame = 0
Query: 1 MAESSDQIPPSKRRFNFLFTCFGSSRKV-----PATVPPDRPV---RYRFKKSSATVPVD 60
MAE+S+++ PSKR +FL CFGSS KV P T D + R+RFKKSSATVP+D
Sbjct: 1 MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPID 60
Query: 61 AAV-----------SVSPEFKNPP----IASIPPVFRTEIVETRDPI----RLDSTAERF 120
AV S SPEFK PP I S P RT+IVE P + +ST F
Sbjct: 61 VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQPWKKTESTRSDF 120
Query: 121 -PPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAP----------------PR 173
PAKRTAA LHS+ PSRR NRQKD K+TV L AV+TP P P
Sbjct: 121 LTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPA 180
BLAST of Sed0021664 vs. NCBI nr
Match:
KAG6606901.1 (60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 142.1 bits (357), Expect = 4.4e-30
Identity = 108/217 (49.77%), Postives = 127/217 (58.53%), Query Frame = 0
Query: 1 MAESSDQIPPSKRRFNFLFTCFGSSRKV-----PATVPPDRPV---RYRFKKSSATVPVD 60
MAE+S+++ PSKR +FL CFGSS KV P T D + R+RFKKSSATVP+D
Sbjct: 1 MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRWDSRIPSPRFRFKKSSATVPID 60
Query: 61 AAV-----------SVSPEFKNPP----IASIPPVFRTEIVETRDPI----RLDSTA-ER 120
AV S SPEFK PP I S P RT+IVE P + +ST +
Sbjct: 61 VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQTWKKTESTRYDS 120
Query: 121 FPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAP----------------PR 173
PAKRTAA LHS+ PSRR NRQKDLK+TV L AV+TP P P
Sbjct: 121 LTPAKRTAALLHSISLPSRRLNRQKDLKKTVSHLSAVKTPTPTSSERRKPADKAPMNSPA 180
BLAST of Sed0021664 vs. NCBI nr
Match:
KAA0052773.1 (60S ribosomal protein L44 [Cucumis melo var. makuwa] >TYK04183.1 60S ribosomal protein L44 [Cucumis melo var. makuwa])
HSP 1 Score: 114.4 bits (285), Expect = 9.8e-22
Identity = 90/223 (40.36%), Postives = 116/223 (52.02%), Query Frame = 0
Query: 1 MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVD 60
MA+SS + PPSK F FLFTCF SS K+PA P R +RFKKSSATVPVD
Sbjct: 1 MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60
Query: 61 AA------VSVSPEFKNPPIASI----PPVFRTEIV-----------ETR---DPIRLDS 120
A +S SP+FK PP S+ P EIV +TR + + +
Sbjct: 61 VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF 120
Query: 121 TAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAV 173
T ++ P ++ AASLHSV PS+ RQKD K +V P P +
Sbjct: 121 TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL 180
BLAST of Sed0021664 vs. NCBI nr
Match:
KGN58547.1 (hypothetical protein Csa_002056 [Cucumis sativus])
HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 85/220 (38.64%), Postives = 114/220 (51.82%), Query Frame = 0
Query: 1 MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVD 60
MA+SS+ IPPSK +FLF+CF SS K+P R +RFKKSSATVPVD
Sbjct: 1 MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60
Query: 61 AA------VSVSPEF-KNPPIASI---PPVFRTEIV--------ETR---DPIRLDSTAE 120
A +S PEF K+PP++ I P EIV +TR + + T +
Sbjct: 61 VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQSNFTTK 120
Query: 121 RFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAVETP 173
+ P ++TAA LHSV PS++ RQK K+ V P P + T
Sbjct: 121 KLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPTY 180
BLAST of Sed0021664 vs. NCBI nr
Match:
XP_022934627.1 (uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934628.1 uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934629.1 uncharacterized protein LOC111441760 [Cucurbita moschata])
HSP 1 Score: 89.0 bits (219), Expect = 4.4e-14
Identity = 84/220 (38.18%), Postives = 106/220 (48.18%), Query Frame = 0
Query: 1 MAESSDQIPPSKRRFNFLFTCFGSSRKV------PATVPPDR--PVRYRFKKSSATVPVD 60
MAESSD K R +FLF CF SS V P P R +R+RFKKSSATVP+D
Sbjct: 1 MAESSD-----KPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60
Query: 61 AAV------SVSPEFKNPPIASIPPVFRTEIV------------------ETRDPIRLDS 120
AAV S+SPEF PP PP+ + EI+ T+ + +S
Sbjct: 61 AAVPCHDELSLSPEFNTPP---PPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSES 120
Query: 121 TAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAV----------------ETP 173
T K+T+ SLHS +K LK+++ LP T
Sbjct: 121 TQSNSTAEKKTSPSLHS----------EKGLKKSISHLPTAAAALTTSLPSSDRWKPPTN 180
BLAST of Sed0021664 vs. ExPASy TrEMBL
Match:
A0A6J1GBH7 (uncharacterized protein LOC111452650 OS=Cucurbita moschata OX=3662 GN=LOC111452650 PE=4 SV=1)
HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 108/217 (49.77%), Postives = 126/217 (58.06%), Query Frame = 0
Query: 1 MAESSDQIPPSKRRFNFLFTCFGSSRKV-----PATVPPDRPV---RYRFKKSSATVPVD 60
MAE+S+++ PSKR +FL CFGSS KV P T D + R+RFKKSSATVP+D
Sbjct: 1 MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPID 60
Query: 61 AAV-----------SVSPEFKNPP----IASIPPVFRTEIVETRDPI----RLDSTAERF 120
AV S SPEFK PP I S P RT+IVE P + +ST F
Sbjct: 61 VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQPWKKTESTRSDF 120
Query: 121 -PPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAP----------------PR 173
PAKRTAA LHS+ PSRR NRQKD K+TV L AV+TP P P
Sbjct: 121 LTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPMNSPA 180
BLAST of Sed0021664 vs. ExPASy TrEMBL
Match:
A0A5A7UA28 (60S ribosomal protein L44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00090 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 4.8e-22
Identity = 90/223 (40.36%), Postives = 116/223 (52.02%), Query Frame = 0
Query: 1 MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVD 60
MA+SS + PPSK F FLFTCF SS K+PA P R +RFKKSSATVPVD
Sbjct: 1 MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60
Query: 61 AA------VSVSPEFKNPPIASI----PPVFRTEIV-----------ETR---DPIRLDS 120
A +S SP+FK PP S+ P EIV +TR + + +
Sbjct: 61 VAYPSHDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPESTQSNF 120
Query: 121 TAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAV 173
T ++ P ++ AASLHSV PS+ RQKD K +V P P +
Sbjct: 121 TTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNKPTPKL 180
BLAST of Sed0021664 vs. ExPASy TrEMBL
Match:
A0A0A0LCZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680630 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 5.4e-18
Identity = 85/220 (38.64%), Postives = 114/220 (51.82%), Query Frame = 0
Query: 1 MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVD 60
MA+SS+ IPPSK +FLF+CF SS K+P R +RFKKSSATVPVD
Sbjct: 1 MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60
Query: 61 AA------VSVSPEF-KNPPIASI---PPVFRTEIV--------ETR---DPIRLDSTAE 120
A +S PEF K+PP++ I P EIV +TR + + T +
Sbjct: 61 VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQSNFTTK 120
Query: 121 RFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAVETP 173
+ P ++TAA LHSV PS++ RQK K+ V P P + T
Sbjct: 121 KLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPTY 180
BLAST of Sed0021664 vs. ExPASy TrEMBL
Match:
A0A6J1F3C2 (uncharacterized protein LOC111441760 OS=Cucurbita moschata OX=3662 GN=LOC111441760 PE=4 SV=1)
HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 84/220 (38.18%), Postives = 106/220 (48.18%), Query Frame = 0
Query: 1 MAESSDQIPPSKRRFNFLFTCFGSSRKV------PATVPPDR--PVRYRFKKSSATVPVD 60
MAESSD K R +FLF CF SS V P P R +R+RFKKSSATVP+D
Sbjct: 1 MAESSD-----KPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60
Query: 61 AAV------SVSPEFKNPPIASIPPVFRTEIV------------------ETRDPIRLDS 120
AAV S+SPEF PP PP+ + EI+ T+ + +S
Sbjct: 61 AAVPCHDELSLSPEFNTPP---PPPLIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSES 120
Query: 121 TAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAV----------------ETP 173
T K+T+ SLHS +K LK+++ LP T
Sbjct: 121 TQSNSTAEKKTSPSLHS----------EKGLKKSISHLPTAAAALTTSLPSSDRWKPPTN 180
BLAST of Sed0021664 vs. ExPASy TrEMBL
Match:
A0A6J1IZW6 (uncharacterized protein LOC111481455 OS=Cucurbita maxima OX=3661 GN=LOC111481455 PE=4 SV=1)
HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 83/217 (38.25%), Postives = 106/217 (48.85%), Query Frame = 0
Query: 1 MAESSDQIPPSKRRFNFLFTCFGSS-----RKVPATVPPDR---PVRYRFKKSSATVPVD 60
MAESSD K R +FLF CF SS +K P+R +R+RFKK SATVP+D
Sbjct: 1 MAESSD-----KPRLHFLFRCFRSSPNVQRQKAQQIASPNRRTPSLRFRFKKCSATVPLD 60
Query: 61 AAV------SVSPEFKNPPIASIPPVFRTEIVET-------------RDPIRLDSTAERF 120
AAV S SPEF PP S P+ IV++ + + + T E+
Sbjct: 61 AAVPCHDELSFSPEFNTPPPPS--PIKGEIIVDSGCKTIKQSKTRKKSESTQSNPTVEKL 120
Query: 121 PPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLP------------------AVETPAPP 173
PPAK+T+ SLHS +K LK+++ LP T +P
Sbjct: 121 PPAKKTSPSLHS----------EKGLKKSISHLPIAVADADPTTSLASSDSWKAPTNSPT 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022949237.1 | 3.4e-30 | 49.77 | uncharacterized protein LOC111452650 [Cucurbita moschata] | [more] |
KAG6606901.1 | 4.4e-30 | 49.77 | 60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
KAA0052773.1 | 9.8e-22 | 40.36 | 60S ribosomal protein L44 [Cucumis melo var. makuwa] >TYK04183.1 60S ribosomal p... | [more] |
KGN58547.1 | 1.1e-17 | 38.64 | hypothetical protein Csa_002056 [Cucumis sativus] | [more] |
XP_022934627.1 | 4.4e-14 | 38.18 | uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934628.1 unchar... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GBH7 | 1.6e-30 | 49.77 | uncharacterized protein LOC111452650 OS=Cucurbita moschata OX=3662 GN=LOC1114526... | [more] |
A0A5A7UA28 | 4.8e-22 | 40.36 | 60S ribosomal protein L44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... | [more] |
A0A0A0LCZ2 | 5.4e-18 | 38.64 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680630 PE=4 SV=1 | [more] |
A0A6J1F3C2 | 2.1e-14 | 38.18 | uncharacterized protein LOC111441760 OS=Cucurbita moschata OX=3662 GN=LOC1114417... | [more] |
A0A6J1IZW6 | 2.8e-14 | 38.25 | uncharacterized protein LOC111481455 OS=Cucurbita maxima OX=3661 GN=LOC111481455... | [more] |
Match Name | E-value | Identity | Description | |