Sed0021566 (gene) Chayote v1

Overview


Name	Sed0021566
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SANT domain-containing protein
Location	LG13: 21547687 .. 21549110 (+)
RNA-Seq Expression	Sed0021566
Synteny	Sed0021566

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCGAGCTCTCTCACGTCGACACGTGTCTTCCACTCGTCGTGGACGAAGAAAGAAAACAAGAAGTTCGAGGAGGCATTGGCGTTCTATGACCAGGACACGCCGGACCGTTTCGAGAAAGTGGCGCAGGCTGTTGGTGGTGGGAAGACAGCTGAGGAAGCAAGAAGGCTCTACGAGTTGCTAGTGCGAGATGTCAAGAAAATCGAAGCTGGTCAAGTTCAAATACCATGCTACAAGAACAGCAGAGGGTAATATATATCCTACTTGCTGAATATTTCATCATGTCAAGCCTGAATCCTATGCTCAGTAACTTCTCCTTTTTACTGGTGGTACATTAGAATAAATGTTCTAAACAAGAAACTTATGTCCATTAGAAAGAAATGTTTTACGAGAATCTGTATCTGAAAAGTAGTATAATCTAAGACCATTAGAAAGAAATGTACCGTTCAATTCAGCAATCTACACTAACTTCAAACTTCAACTTCTTTTTAAGTAGACCAAGCAAAGAATCTGAAAATTTTCTCAAAATAAAGTTAAACAGGGAAACGTAACATTAAATACTAATTCCATATGTTGTATGATTAGGAGTCAGTAAACCACCATAAACCAAAAGGTTGTGGATTGCCAGCTACCTAAGAATTAATTTCCTCGAGGTTTCCATGACATCAAAATGTTACATGGTTAGGCAGTATATCTCGGGAAAATGGTCGAGGTGCAGAAAAAATGGCCCGAGAGTGAGTACGTTTATAGTGCATGAGTAGCCTAGGTGCCATCTGAATCACAGATAAGCTGATAACAGGATATTGAAAATCTTAAGACAGGCACTAATCGTAAATAATAGACCTCGAAGGTTCAAAACTTGTCCACGTATCCCTCAAATGCATTCCTTCTTTTTCTAGTGGCTACCACTTGCCTAAAATGGCGGCCCCTGATTCAATATAAAATTATCTTGGGAGTCTGTGACTAAGCAATTTTCTAACATTTTCCATTATCCATTCGTATATTCAACTCTACGCAATCCACATGATCCCATAATTTGGAATCCAGAGTCTATTATGATAATTTTATAGCCAGATTTACCCTGATTTTTTATTTTTTGTTATTAAAACGGCAATCAACAATCAATAACGAAGATAAAGAAATCGTAAAAGAGGAAGAAAAACAGAAATCACACACAAGGATTTACGTGGTTCACCAACGTTGTGTTGCCTAGTCCACGTAAGAAAGCTCAGCTCCTCAGGAGAAAACACATAACCTTTTGTTCAACCCCCCAGAATTCTAACAACAAATATGTCCACAATATTTCTTTCACTCCTCTAATTTAGGCAAAAGAAAGTATAATTTACTCTGATCTTTTCGATTAGTGTAACATGCTCACGAAGAAGTCTTAGAGATGTAAGAGGTTACGTATTCAATTTTGA

mRNA sequence

ATGGCATCGAGCTCTCTCACGTCGACACGTGTCTTCCACTCGTCGTGGACGAAGAAAGAAAACAAGAAGTTCGAGGAGGCATTGGCGTTCTATGACCAGGACACGCCGGACCGTTTCGAGAAAGTGGCGCAGGCTGTTGGTGGTGGGAAGACAGCTGAGGAAGCAAGAAGGCTCTACGAGTTGCTAGTGCGAGATGTCAAGAAAATCGAAGCTGGTCAAGTTCAAATACCATGCTACAAGAACAGCAGAGGATGTAAGAGGTTACGTATTCAATTTTGA

Coding sequence (CDS)

ATGGCATCGAGCTCTCTCACGTCGACACGTGTCTTCCACTCGTCGTGGACGAAGAAAGAAAACAAGAAGTTCGAGGAGGCATTGGCGTTCTATGACCAGGACACGCCGGACCGTTTCGAGAAAGTGGCGCAGGCTGTTGGTGGTGGGAAGACAGCTGAGGAAGCAAGAAGGCTCTACGAGTTGCTAGTGCGAGATGTCAAGAAAATCGAAGCTGGTCAAGTTCAAATACCATGCTACAAGAACAGCAGAGGATGTAAGAGGTTACGTATTCAATTTTGA

Protein sequence

MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGCKRLRIQF

Homology

[Close]

BLAST of Sed0021566 vs. NCBI nr
Match: XP_008466554.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo] >KAA0041600.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.6e-31
Identity = 74/85 (87.06%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS+TST  F+SSWTKKENKKFEEALAF+D+DTPDRFEKVA+AVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNSRGC 86
          LLVRDV+KIEAGQVQIP YKN+ GC
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNA-GC 84

[Close]

BLAST of Sed0021566 vs. NCBI nr
Match: KGN60114.2 (hypothetical protein Csa_000871 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 1.6e-31
Identity = 74/85 (87.06%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS+TST  F+SSWTKKENKKFEEALAF+D+DTPDRFEKVA+AVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNSRGC 86
          LLVRDV+KIEAGQVQIP YKN+ GC
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNA-GC 84

[Close]

BLAST of Sed0021566 vs. NCBI nr
Match: XP_022155868.1 (protein RADIALIS-like 4 [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 3.6e-31
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS+TS R F+SSWTK+ENKKFEEALAFYDQDTPDRFEKVA+AVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNS 83
          LL RDVKKIEAGQVQIP YKN+
Sbjct: 61 LLERDVKKIEAGQVQIPLYKNT 82

[Close]

BLAST of Sed0021566 vs. NCBI nr
Match: XP_022936283.1 (protein RADIALIS-like 3 [Cucurbita moschata] >KAG6591311.1 Protein RADIALIS-like 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024194.1 Protein RADIALIS-like 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-30
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MASSSLTS-TRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLY 60
          MASSS+TS  R F+SSWTKKENKKFEEALA+YDQDTPDRFEKVA+AVGGGKTAEEARRLY
Sbjct: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPCYKNSRGC 86
          ELLVRDVKKIEAGQVQIP YKN  GC
Sbjct: 61 ELLVRDVKKIEAGQVQIPLYKNV-GC 85

[Close]

BLAST of Sed0021566 vs. NCBI nr
Match: XP_022940511.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 7.6e-29
Identity = 69/81 (85.19%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS T+   F+SSWTK+ENKKFEEALAFYDQDTPDRFE VA+AVGGGKTAEE RRLYE
Sbjct: 1  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKN 82
          LLVRDV KIEAGQVQIP YKN
Sbjct: 61 LLVRDVNKIEAGQVQIPLYKN 81

[Close]

BLAST of Sed0021566 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-18
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YE
Sbjct: 1  MASSSMSSQS--SGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNSRGCKRLRI 91
          LLV+D+  IE G V  P Y+ S GC   R+
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSGGCTNGRL 87

[Close]

BLAST of Sed0021566 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-17
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VA+AV GGKT EEA+R Y+
Sbjct: 1  MASGSMSS--YGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNSRG 85
          LLVRD++ IE G V  P YK + G
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTG 81

[Close]

BLAST of Sed0021566 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MAS+S++S+    +SWT+KENK FE ALA YDQDTPDR+  VA+AV GGK+AEE RR YE
Sbjct: 1  MASNSMSSS----ASWTRKENKLFERALATYDQDTPDRWHNVARAV-GGKSAEEVRRHYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNS 83
          LL+RDV  IE+G+   P Y+++
Sbjct: 61 LLIRDVNDIESGRYPHPNYRSN 77

[Close]

BLAST of Sed0021566 vs. ExPASy Swiss-Prot
Match: Q1G3C4 (Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-15
Identity = 45/82 (54.88%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+A+AV GGK+ EE +R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNS 83
          LL+RDV  IE+G+   P Y+N+
Sbjct: 61 LLLRDVNDIESGRYPQPRYRNT 76

[Close]

BLAST of Sed0021566 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.9e-15
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS++S+    SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y+
Sbjct: 1  MASSSMSSS----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYD 60

Query: 61 LLVRDVKKIEAGQVQIPCYK 81
          +LV D+  IE   V +P YK
Sbjct: 61 ILVEDLMNIEQDLVPLPKYK 75

[Close]

BLAST of Sed0021566 vs. ExPASy TrEMBL
Match: A0A5A7TE80 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00690 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.9e-32
Identity = 74/85 (87.06%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS+TST  F+SSWTKKENKKFEEALAF+D+DTPDRFEKVA+AVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNSRGC 86
          LLVRDV+KIEAGQVQIP YKN+ GC
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNA-GC 84

[Close]

BLAST of Sed0021566 vs. ExPASy TrEMBL
Match: A0A0A0LGL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857080 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.9e-32
Identity = 74/85 (87.06%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS+TST  F+SSWTKKENKKFEEALAF+D+DTPDRFEKVA+AVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNSRGC 86
          LLVRDV+KIEAGQVQIP YKN+ GC
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNA-GC 84

[Close]

BLAST of Sed0021566 vs. ExPASy TrEMBL
Match: A0A1S3CRN8 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103503940 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.9e-32
Identity = 74/85 (87.06%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS+TST  F+SSWTKKENKKFEEALAF+D+DTPDRFEKVA+AVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNSRGC 86
          LLVRDV+KIEAGQVQIP YKN+ GC
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNA-GC 84

[Close]

BLAST of Sed0021566 vs. ExPASy TrEMBL
Match: A0A6J1DP29 (protein RADIALIS-like 4 OS=Momordica charantia OX=3673 GN=LOC111022857 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.8e-31
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS+TS R F+SSWTK+ENKKFEEALAFYDQDTPDRFEKVA+AVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNS 83
          LL RDVKKIEAGQVQIP YKN+
Sbjct: 61 LLERDVKKIEAGQVQIPLYKNT 82

[Close]

BLAST of Sed0021566 vs. ExPASy TrEMBL
Match: A0A6J1FCU5 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111442950 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.7e-31
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MASSSLTS-TRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLY 60
          MASSS+TS  R F+SSWTKKENKKFEEALA+YDQDTPDRFEKVA+AVGGGKTAEEARRLY
Sbjct: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVKKIEAGQVQIPCYKNSRGC 86
          ELLVRDVKKIEAGQVQIP YKN  GC
Sbjct: 61 ELLVRDVKKIEAGQVQIPLYKNV-GC 85

[Close]

BLAST of Sed0021566 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-19
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YE
Sbjct: 1  MASSSMSSQS--SGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNSRGCKRLRI 91
          LLV+D+  IE G V  P Y+ S GC   R+
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSGGCTNGRL 87

[Close]

BLAST of Sed0021566 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 7.6e-19
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VA+AV GGKT EEA+R Y+
Sbjct: 1  MASGSMSS--YGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNSRG 85
          LLVRD++ IE G V  P YK + G
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTG 81

[Close]

BLAST of Sed0021566 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 84.0 bits (206), Expect = 7.1e-17
Identity = 45/82 (54.88%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+A+AV GGK+ EE +R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVKKIEAGQVQIPCYKNS 83
          LL+RDV  IE+G+   P Y+N+
Sbjct: 61 LLLRDVNDIESGRYPQPRYRNT 76

[Close]

BLAST of Sed0021566 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 81.6 bits (200), Expect = 3.5e-16
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MASSS++S+    SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y+
Sbjct: 1  MASSSMSSS----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYD 60

Query: 61 LLVRDVKKIEAGQVQIPCYK 81
          +LV D+  IE   V +P YK
Sbjct: 61 ILVEDLMNIEQDLVPLPKYK 75

[Close]

BLAST of Sed0021566 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 78.2 bits (191), Expect = 3.9e-15
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 1  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYE 60
          MAS+S +S     S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y+
Sbjct: 1  MASNSRSSI----SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYD 60

Query: 61 LLVRDVKKIEAGQVQIPCYK 81
          +LV D+  IE G+V +P YK
Sbjct: 61 ILVEDLINIETGRVPLPNYK 75

The following BLAST results are available for this feature:

BLAST of Sed0021566 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466554.1	1.6e-31	87.06	PREDICTED: protein RADIALIS-like 4 [Cucumis melo] >KAA0041600.1 protein RADIALIS...	[more]
KGN60114.2	1.6e-31	87.06	hypothetical protein Csa_000871 [Cucumis sativus]	[more]
XP_022155868.1	3.6e-31	89.02	protein RADIALIS-like 4 [Momordica charantia]	[more]
XP_022936283.1	1.4e-30	88.37	protein RADIALIS-like 3 [Cucurbita moschata] >KAG6591311.1 Protein RADIALIS-like...	[more]
XP_022940511.1	7.6e-29	85.19	protein RADIALIS-like 3 [Cucurbita moschata]	[more]

BLAST of Sed0021566 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	3.7e-18	55.56	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	1.1e-17	59.52	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	1.4e-17	59.76	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1G3C4	1.0e-15	54.88	Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1	[more]
Q8GW75	4.9e-15	56.25	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of Sed0021566 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TE80	7.9e-32	87.06	Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LGL4	7.9e-32	87.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857080 PE=4 SV=1	[more]
A0A1S3CRN8	7.9e-32	87.06	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103503940 PE=4 SV=1	[more]
A0A6J1DP29	1.8e-31	89.02	protein RADIALIS-like 4 OS=Momordica charantia OX=3673 GN=LOC111022857 PE=4 SV=1	[more]
A0A6J1FCU5	6.7e-31	88.37	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111442950 PE=4 SV=1	[more]

BLAST of Sed0021566 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	2.6e-19	55.56	RAD-like 1	[more]
AT2G21650.1	7.6e-19	59.52	Homeodomain-like superfamily protein	[more]
AT2G18328.1	7.1e-17	54.88	RAD-like 4	[more]
AT1G19510.1	3.5e-16	56.25	RAD-like 5	[more]
AT1G75250.1	3.9e-15	55.00	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..65 e-value: 0.0022 score: 27.3
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 15..54 e-value: 0.00602425 score: 30.2362
None	No IPR available	GENE3D	1.10.10.60		coord: 8..76 e-value: 1.7E-18 score: 68.1
None	No IPR available	PANTHER	PTHR43952:SF40	OS05G0579600 PROTEIN	coord: 1..84
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..84
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021566.1	Sed0021566.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity