Sed0021517 (gene) Chayote v1

Overview
NameSed0021517
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRrna intron-encoded homing endonuclease
LocationLG01: 63173475 .. 63173716 (-)
RNA-Seq ExpressionSed0021517
SyntenySed0021517
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGTGGTGCATGGTCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTTCGTTAACGAACGAGACCTCAACCTGCTAACTAGCTATGCAGAGGGATCCCTCCGTGGCTAGCTTCTTAGAGGAACTATGGCCGCTTAGGCCAGGGAAGTTTGAGGCAATATCAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCTATCGCCAGTTCTGCTTACCAAAAATGGCCTACTTAG

mRNA sequence

ATGGGTGGTGGTGCATGGTCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTTCGTTAACGAACGAGACCTCAACCTGCTAACTAGCTATGCAGAGGGATCCCTCCGCCAGGGAAGTTTGAGGCAATATCAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCTATCGCCAGTTCTGCTTACCAAAAATGGCCTACTTAG

Coding sequence (CDS)

ATGGGTGGTGGTGCATGGTCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTTCGTTAACGAACGAGACCTCAACCTGCTAACTAGCTATGCAGAGGGATCCCTCCGCCAGGGAAGTTTGAGGCAATATCAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCTATCGCCAGTTCTGCTTACCAAAAATGGCCTACTTAG

Protein sequence

MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHAIASSAYQKWPT
Homology
BLAST of Sed0021517 vs. NCBI nr
Match: KAF9662358.1 (hypothetical protein SADUNF_Sadunf18G0044900 [Salix dunnii])

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 43/57 (75.44%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 1  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA 58
          MGGGAWSFLVGGAICLVN VNERDL+LLTSYAE            VCDALRCSGPHA
Sbjct: 1  MGGGAWSFLVGGAICLVNSVNERDLSLLTSYAE------------VCDALRCSGPHA 45

BLAST of Sed0021517 vs. NCBI nr
Match: KAE8637436.1 (hypothetical protein CSA_004614 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 42/57 (73.68%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA 58
          MGGGAW FLVGGAICLVN VNERDL+LLTSYAE            VCDALRCSGPHA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------------VCDALRCSGPHA 45

BLAST of Sed0021517 vs. NCBI nr
Match: KAG5568993.1 (hypothetical protein H5410_064037 [Solanum commersonii])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 42/57 (73.68%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA 58
          MGGGAW FLVGGAICLVN VNERDL+LLTSYAE            VCDALRCSGPHA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE------------VCDALRCSGPHA 45

BLAST of Sed0021517 vs. NCBI nr
Match: KAD4586614.1 (hypothetical protein E3N88_24215 [Mikania micrantha])

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 1  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHAIAS 60
          MGGGAW FLVGGAICLVN VNE+DL+LLTSYAE            VCDALRCSGPHA  +
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNEQDLSLLTSYAE------------VCDALRCSGPHARYT 54

Query: 61 SAYQKW 67
            + ++
Sbjct: 61 DVFNEY 54

BLAST of Sed0021517 vs. NCBI nr
Match: KAF9672699.1 (hypothetical protein SADUNF_Sadunf11G0071000 [Salix dunnii])

HSP 1 Score: 81.6 bits (200), Expect = 2.8e-12
Identity = 41/57 (71.93%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA 58
          MGGGAW FLVGGAIC+VN VNERDL+LLTSYAE            VCDALRCSGPHA
Sbjct: 1  MGGGAWPFLVGGAICVVNSVNERDLSLLTSYAE------------VCDALRCSGPHA 45

BLAST of Sed0021517 vs. ExPASy TrEMBL
Match: A0A5N6NFM9 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_24215 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.9e-13
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 1  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHAIAS 60
          MGGGAW FLVGGAICLVN VNE+DL+LLTSYAE            VCDALRCSGPHA  +
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNEQDLSLLTSYAE------------VCDALRCSGPHARYT 54

Query: 61 SAYQKW 67
            + ++
Sbjct: 61 DVFNEY 54

BLAST of Sed0021517 vs. ExPASy TrEMBL
Match: A0A0D2ZQ56 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 43/71 (60.56%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 1  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHAIAS 60
          MGGGAW FLVGGAICLVN VNERDL+LLTSY              VCDALRCSGPHA  +
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSY--------------VCDALRCSGPHARYT 57

Query: 61 SAYQK---WPT 69
            + +   WPT
Sbjct: 61 DVFNEFTPWPT 57

BLAST of Sed0021517 vs. ExPASy TrEMBL
Match: A0A6A5L9L7 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046678 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 41/57 (71.93%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA 58
          MGGGAW FLVGGAICLVN VNERDL+LLTSY E            VCDALRCSGPHA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVE------------VCDALRCSGPHA 45

BLAST of Sed0021517 vs. ExPASy TrEMBL
Match: A0A6A5L666 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00048553 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 41/57 (71.93%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA 58
          MGGGAW FLVGGAICLVN VNERDL+LLTSY E            VCDALRCSGPHA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVE------------VCDALRCSGPHA 45

BLAST of Sed0021517 vs. ExPASy TrEMBL
Match: A0A6A5L6D6 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043477 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 41/57 (71.93%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA 58
          MGGGAW FLVGGAICLVN VNERDL+LLTSY E            VCDALRCSGPHA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVE------------VCDALRCSGPHA 45

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF9662358.13.3e-1375.44hypothetical protein SADUNF_Sadunf18G0044900 [Salix dunnii][more]
KAE8637436.11.3e-1273.68hypothetical protein CSA_004614 [Cucumis sativus][more]
KAG5568993.11.3e-1273.68hypothetical protein H5410_064037 [Solanum commersonii][more]
KAD4586614.11.6e-1262.12hypothetical protein E3N88_24215 [Mikania micrantha][more]
KAF9672699.12.8e-1271.93hypothetical protein SADUNF_Sadunf11G0071000 [Salix dunnii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5N6NFM97.9e-1362.12Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_24215 PE=4 SV=1[more]
A0A0D2ZQ561.0e-1260.56Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1[more]
A0A6A5L9L71.8e-1271.93Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046678 PE=4 SV=1[more]
A0A6A5L6661.8e-1271.93Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00048553 PE=4 SV=1[more]
A0A6A5L6D61.8e-1271.93Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043477 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0021517.1Sed0021517.1mRNA