Sed0021486 (gene) Chayote v1

Overview


Name	Sed0021486
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ethylene-responsive transcription factor SHINE 2-like
Location	LG13: 25166544 .. 25168445 (+)
RNA-Seq Expression	Sed0021486
Synteny	Sed0021486

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATAAATGGCTGAAATTATTACATTCTGTACGTTTTTCCATCTCCCTAACCTGTGTTTTCTCTGTTACTTTCAGGCTCTGAAACTTCTCTGTTTTCTTGAGTTATGGTTTATTCGAGGAAGTTCAGAGGAGTCAGGCAACGGCAGTGGGGCTCGTGGGTGTCAGAAATTCGCCACCCATTGCTGTAAATTCCCTTTTCTTTTGTTTTTGTTCTTCTTTTTGGTATAAATTTATGTGCATTGATTTGATTTTGTTGGTTTGGAATTGCTCTGTTTTTGCATTTTTTTTGTCTAGTGCCCATAACCTGTTTGTTGATTTGTCTCTATGGAAATTTTTGGCTATGGTGGTGTTGATTTGTTTGCTACATTGTTGCTGTGAATATTGTGTGCTATTTTGCTTTGTTGGGTTTAGTATGCTCTGAAAAACCCATGTTTTGTCTGGTGTAGATAACCTGTTTGTTGATTTGTCTGCAAGAAACTTGGTGGCCATGGTGGCTTGGATTTGTAAACAATGTTGTTTTTGTAAATTTGTGTGCAATTGCTTGTGTTTGTTGGTTTGGAAATGGTTTCAATCTCCATGTTTTTTTCTGGTGCCCATAACTTGTTTGTTTATTTGCTTCTAAGGGCAATGGCATTCATATTTCTGCTGATTTGTGGACAACATTATTTATTACAAACCATGTGTATTCTTCTTGTGTAAATTTATATGTTTTGTTGCCCATAAGTCAATTGGTATGATGTATGAGTTTATATTCGAATAGATTATAGGTTCAAATCCTCTACCACCAACGTGGTTGAATTCGAAGAAAAAAAATCTGTCTGTTGGCTTAAAAGTTGCCCTGAAATGTGAAAACTCTTCATGTTTGATGCTTCCAACTTGTTTGTTGATTTGCTCCAAAGGAATTAGCCTGCTATGGCCATATTTAAGGGGCTAAAGATTTCAAGGCATACTTCTTTGAGAGATCCCTGGTTCGAGGCCGCTGGAAAGCATTTAAATTAGAATACCTTTCGAAGTATCCTGGTGTCATAGTTTAAGGACGGGCCAGTGGTGCTCCGGGTATAGTGGAGCGAAGCTCCGATTTCCCGATTTTCAAAAAAAAAAAGAAACTACATTACATCTTCAGTGCACTTTCTTATAATTTTCATGTGTTTTTTTCCTTTGTAGGAAGAGAAGAGTGTGGCTAGGGACATTCGACACGGCAGAGGATGCCGCACGGGCGTATGATCAAGCAGCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGATCAACATGGAGCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACCAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCATTGACATGCCTGCGTCTCGACAGTGACAACGCCCACATCGGCATCTGGCAGAAGCGTGCAGGCCCTCGAGCTGCCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGACACCGTTGCTGTCGCTGTCGCCGTTGCCCGAGTTGGTGAGCCAGGAAGCTGATGGGCTGGGGAATGGAATTGATGAGGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTGCTCAATTGGAACTACCCTCTTCCTTCAACTTCAAGCTAAGTACAAGATCTCAACACAAAACTCAACTCTAAAAATAAAATAAGCCCATTAAACTAAAACAAAGAAACTTAATCAATCTGTGTTTGACAGTGTATGTGTATGTACATATATGTGTGTTATGCTTAGTGTTACTTTCAGCTTATGTAAATCTGTTTATGGGTTTTGGGAAGCTCAAATTCTGTATAAAGGGGGAGCTTTTGCAAATAGATGAGTTGCTGTTTTATGTCAAGTTGATTCAAAATCATAGAGGA

mRNA sequence

ATATAAATGGCTGAAATTATTACATTCTGTACGTTTTTCCATCTCCCTAACCTGTGTTTTCTCTGTTACTTTCAGGCTCTGAAACTTCTCTGTTTTCTTGAGTTATGGTTTATTCGAGGAAGTTCAGAGGAGTCAGGCAACGGCAGTGGGGCTCGTGGGTGTCAGAAATTCGCCACCCATTGCTGAAGAGAAGAGTGTGGCTAGGGACATTCGACACGGCAGAGGATGCCGCACGGGCGTATGATCAAGCAGCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGATCAACATGGAGCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACCAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCATTGACATGCCTGCGTCTCGACAGTGACAACGCCCACATCGGCATCTGGCAGAAGCGTGCAGGCCCTCGAGCTGCCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGACACCGTTGCTGTCGCTGTCGCCGTTGCCCGAGTTGGTGAGCCAGGAAGCTGATGGGCTGGGGAATGGAATTGATGAGGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTGCTCAATTGGAACTACCCTCTTCCTTCAACTTCAAGCTAAGTACAAGATCTCAACACAAAACTCAACTCTAAAAATAAAATAAGCCCATTAAACTAAAACAAAGAAACTTAATCAATCTGTGTTTGACAGTGTATGTGTATGTACATATATGTGTGTTATGCTTAGTGTTACTTTCAGCTTATGTAAATCTGTTTATGGGTTTTGGGAAGCTCAAATTCTGTATAAAGGGGGAGCTTTTGCAAATAGATGAGTTGCTGTTTTATGTCAAGTTGATTCAAAATCATAGAGGA

Coding sequence (CDS)

ATGGTTTATTCGAGGAAGTTCAGAGGAGTCAGGCAACGGCAGTGGGGCTCGTGGGTGTCAGAAATTCGCCACCCATTGCTGAAGAGAAGAGTGTGGCTAGGGACATTCGACACGGCAGAGGATGCCGCACGGGCGTATGATCAAGCAGCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGATCAACATGGAGCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACCAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCATTGACATGCCTGCGTCTCGACAGTGACAACGCCCACATCGGCATCTGGCAGAAGCGTGCAGGCCCTCGAGCTGCCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGACACCGTTGCTGTCGCTGTCGCCGTTGCCCGAGTTGGTGAGCCAGGAAGCTGATGGGCTGGGGAATGGAATTGATGAGGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTGCTCAATTGGAACTACCCTCTTCCTTCAACTTCAAGCTAA

Protein sequence

MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSDQHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIWQKRAGPRAASNWVMRIELGKKETPLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIEELLNWNYPLPSTSS

Homology

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BLAST of Sed0021486 vs. NCBI nr
Match: KAG7031792.1 (Ethylene-responsive transcription factor SHINE 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344.4 bits (882), Expect = 6.4e-91
Identity = 172/194 (88.66%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQA+ILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60

Query: 61  NFPASKDQSDQ----HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIW 120
           NFPASKD+S++    HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG+W
Sbjct: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120

Query: 121 QKRAGPRAASNWVMRIELGKKET--PLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIE 180
           QKRAG RAAS+WVMRIELGKKET  P +SLSPLPE  SQEA+G  NGIDEEDRIAMQMIE
Sbjct: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180

Query: 181 ELLNWNYPLPSTSS 189
           ELL+WN PLPSTSS
Sbjct: 181 ELLSWNCPLPSTSS 194

[Close]

BLAST of Sed0021486 vs. NCBI nr
Match: XP_022940113.1 (ethylene-responsive transcription factor SHINE 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 344.4 bits (882), Expect = 6.4e-91
Identity = 172/194 (88.66%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQA+ILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60

Query: 61  NFPASKDQSDQ----HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIW 120
           NFPASKD+S++    HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG+W
Sbjct: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120

Query: 121 QKRAGPRAASNWVMRIELGKKET--PLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIE 180
           QKRAG RAAS+WVMRIELGKKET  P +SLSPLPE  SQEA+G  NGIDEEDRIAMQMIE
Sbjct: 121 QKRAGTRAASDWVMRIELGKKETPPPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180

Query: 181 ELLNWNYPLPSTSS 189
           ELL+WN PLPSTSS
Sbjct: 181 ELLSWNCPLPSTSS 194

[Close]

BLAST of Sed0021486 vs. NCBI nr
Match: XP_023524391.1 (ethylene-responsive transcription factor SHINE 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 341.3 bits (874), Expect = 5.4e-90
Identity = 170/192 (88.54%), Postives = 179/192 (93.23%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQA+ILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60

Query: 61  NFPASKDQSDQ--HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIWQK 120
           NFPASKD+S+   HGASPLSPKALSELLSTKL+KCCKNPSPSLTCLRLDSDNAHIG+WQK
Sbjct: 61  NFPASKDRSESHGHGASPLSPKALSELLSTKLKKCCKNPSPSLTCLRLDSDNAHIGVWQK 120

Query: 121 RAGPRAASNWVMRIELGKKET--PLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIEEL 180
           RAG RAAS+WVMRIELGKKET  P + LSPLPE  SQEA+G  NGIDEEDRIAMQMIEEL
Sbjct: 121 RAGTRAASDWVMRIELGKKETPSPSMPLSPLPEPASQEAEGRQNGIDEEDRIAMQMIEEL 180

Query: 181 LNWNYPLPSTSS 189
           L+WN PLPSTSS
Sbjct: 181 LSWNCPLPSTSS 192

[Close]

BLAST of Sed0021486 vs. NCBI nr
Match: XP_022981248.1 (ethylene-responsive transcription factor SHINE 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 340.9 bits (873), Expect = 7.1e-90
Identity = 170/194 (87.63%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQA+ILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60

Query: 61  NFPASKDQSDQ----HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIW 120
           NFPASKD+S++    H ASPLSPK LSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG+W
Sbjct: 61  NFPASKDRSEEASHGHSASPLSPKTLSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120

Query: 121 QKRAGPRAASNWVMRIELGKKET--PLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIE 180
           QKRAG RAAS+WVMRIELGKKET  P +SLSPLPE  SQEA+G  NGIDEEDRIAMQMIE
Sbjct: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGCQNGIDEEDRIAMQMIE 180

Query: 181 ELLNWNYPLPSTSS 189
           ELL+WN PLPSTSS
Sbjct: 181 ELLSWNCPLPSTSS 194

[Close]

BLAST of Sed0021486 vs. NCBI nr
Match: XP_038899931.1 (ethylene-responsive transcription factor SHINE 2-like isoform X3 [Benincasa hispida])

HSP 1 Score: 335.5 bits (859), Expect = 3.0e-88
Identity = 169/192 (88.02%), Postives = 175/192 (91.15%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 16  MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 75

Query: 61  NFPASKDQSDQ----HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIW 120
           NFPASKDQS++    HG+SP+SPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG+W
Sbjct: 76  NFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 135

Query: 121 QKRAGPRAASNWVMRIELGKKETPLLSLSPLPELVSQEADGLG--NGIDEEDRIAMQMIE 180
           QKRAG RA SNWVMRIELGKK+ P  S SP PE  SQEADG G  NGIDEEDRIAMQMIE
Sbjct: 136 QKRAGTRATSNWVMRIELGKKDVP--SPSPSPESTSQEADGDGHRNGIDEEDRIAMQMIE 195

Query: 181 ELLNWNYPLPST 187
           ELLNWN PLPST
Sbjct: 196 ELLNWNCPLPST 205

[Close]

BLAST of Sed0021486 vs. ExPASy Swiss-Prot
Match: Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.3e-59
Identity = 120/189 (63.49%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+SRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAA+LMNGQNAKT
Sbjct: 1   MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60

Query: 61  NFPASKDQSDQHGA----SPL-SPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGI 120
           NFP  K +          SPL SPK+LSELL+ KLRK CK+ +PSLTCLRLD+D++HIG+
Sbjct: 61  NFPVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGV 120

Query: 121 WQKRAGPRAASNWVMRIELG---KKETPLLSLSPL-PELVSQEADGLGNGIDEEDRIAMQ 180
           WQKRAG + +  WVMR+ELG    +    L L+ +  + V +E +     I +ED++AM+
Sbjct: 121 WQKRAGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEKEEEEEEAIISDEDQLAME 180

[Close]

BLAST of Sed0021486 vs. ExPASy Swiss-Prot
Match: Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.9e-59
Identity = 114/185 (61.62%), Postives = 142/185 (76.76%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAE AARAYDQAA+LMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPASK---DQSDQHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIWQ 120
           NFP  K     S +  ++  SPK+LSELL+ KLRK CK+ +P LTCLRLD+D++HIG+WQ
Sbjct: 61  NFPVIKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQ 120

Query: 121 KRAGPRAASNWVMRIELGKKETPLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIEELL 180
           KRAG + + NWV  +ELG K    ++  P  ++ + +       + E+D++AMQMIEELL
Sbjct: 121 KRAGSKTSPNWVKLVELGDK----VNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEELL 180

Query: 181 NWNYP 183
           NW  P
Sbjct: 181 NWTCP 181

[Close]

BLAST of Sed0021486 vs. ExPASy Swiss-Prot
Match: Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.9e-54
Identity = 108/201 (53.73%), Postives = 143/201 (71.14%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV ++KFRGVRQR WGSWV+EIRHPLLKRR+WLGTF+TAE+AARAYD+AA+LM+G+NAKT
Sbjct: 1   MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60

Query: 61  NFPASKDQSDQHG------------ASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 120
           NFP + + + +              +S  S  +LS +LS KLRKCCK+PSPSLTCLRLD+
Sbjct: 61  NFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDT 120

Query: 121 DNAHIGIWQKRAGPRAASNWVMRIELG---------KKETPLLSLSPLPELVSQEADGLG 180
            ++HIG+WQKRAG ++ S+WVM +ELG          K +    L+P  E+  +      
Sbjct: 121 ASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEV--EIGGSRE 180

[Close]

BLAST of Sed0021486 vs. ExPASy Swiss-Prot
Match: Q94AW5 (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-23
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPA 64
          ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAEDAARAYD+AA LM G  A+TNFP 
Sbjct: 6  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP- 65

Query: 65 SKDQSDQHGASPLSPKALSELLSTKLRKC 94
               + +     S K LS  L+ KL KC
Sbjct: 66 ----YNPNAIPTSSSKLLSATLTAKLHKC 89

[Close]

BLAST of Sed0021486 vs. ExPASy Swiss-Prot
Match: P16146 (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.6e-20
Identity = 50/89 (56.18%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPA 64
          +++RG RQR WGSWVSEIRH +LK R+W GTF++AEDAARAYD+AA LM G  A+TNFP 
Sbjct: 6  QRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRARTNFPY 65

Query: 65 SKDQSDQHGASPLSPKALSELLSTKLRKC 94
          + + S        S K LS  L  KL +C
Sbjct: 66 NPNASQSS-----SSKLLSATLIAKLHRC 89

[Close]

BLAST of Sed0021486 vs. ExPASy TrEMBL
Match: A0A6J1FNE0 (ethylene-responsive transcription factor SHINE 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445833 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.1e-91
Identity = 172/194 (88.66%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQA+ILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60

Query: 61  NFPASKDQSDQ----HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIW 120
           NFPASKD+S++    HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG+W
Sbjct: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120

Query: 121 QKRAGPRAASNWVMRIELGKKET--PLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIE 180
           QKRAG RAAS+WVMRIELGKKET  P +SLSPLPE  SQEA+G  NGIDEEDRIAMQMIE
Sbjct: 121 QKRAGTRAASDWVMRIELGKKETPPPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180

Query: 181 ELLNWNYPLPSTSS 189
           ELL+WN PLPSTSS
Sbjct: 181 ELLSWNCPLPSTSS 194

[Close]

BLAST of Sed0021486 vs. ExPASy TrEMBL
Match: A0A6J1J1K6 (ethylene-responsive transcription factor SHINE 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480443 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.4e-90
Identity = 170/194 (87.63%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQA+ILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60

Query: 61  NFPASKDQSDQ----HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIW 120
           NFPASKD+S++    H ASPLSPK LSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG+W
Sbjct: 61  NFPASKDRSEEASHGHSASPLSPKTLSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120

Query: 121 QKRAGPRAASNWVMRIELGKKET--PLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIE 180
           QKRAG RAAS+WVMRIELGKKET  P +SLSPLPE  SQEA+G  NGIDEEDRIAMQMIE
Sbjct: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGCQNGIDEEDRIAMQMIE 180

Query: 181 ELLNWNYPLPSTSS 189
           ELL+WN PLPSTSS
Sbjct: 181 ELLSWNCPLPSTSS 194

[Close]

BLAST of Sed0021486 vs. ExPASy TrEMBL
Match: A0A6J1FE03 (ethylene-responsive transcription factor SHINE 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443124 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.2e-87
Identity = 167/192 (86.98%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASKDQSDQ----HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIW 120
           NFPASKDQS +    HG+SP++PKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG+W
Sbjct: 61  NFPASKDQSAEASHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120

Query: 121 QKRAGPRAASNWVMRIELGKKETPLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIEEL 180
           QKRAG RA SNWVMRIELGKKE P  S  P PE  SQE DG  NGIDEEDRIAMQMIEEL
Sbjct: 121 QKRAGTRATSNWVMRIELGKKEIP--SPLPSPESTSQEPDGHRNGIDEEDRIAMQMIEEL 180

Query: 181 LNWNYPLPSTSS 189
           LNWN PLPS SS
Sbjct: 181 LNWNCPLPSISS 190

[Close]

BLAST of Sed0021486 vs. ExPASy TrEMBL
Match: A0A6J1F8L5 (ethylene-responsive transcription factor SHINE 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443124 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.2e-87
Identity = 167/192 (86.98%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 6   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 65

Query: 61  NFPASKDQSDQ----HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIW 120
           NFPASKDQS +    HG+SP++PKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG+W
Sbjct: 66  NFPASKDQSAEASHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 125

Query: 121 QKRAGPRAASNWVMRIELGKKETPLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIEEL 180
           QKRAG RA SNWVMRIELGKKE P  S  P PE  SQE DG  NGIDEEDRIAMQMIEEL
Sbjct: 126 QKRAGTRATSNWVMRIELGKKEIP--SPLPSPESTSQEPDGHRNGIDEEDRIAMQMIEEL 185

Query: 181 LNWNYPLPSTSS 189
           LNWN PLPS SS
Sbjct: 186 LNWNCPLPSISS 195

[Close]

BLAST of Sed0021486 vs. ExPASy TrEMBL
Match: A0A6J1BYX9 (ethylene-responsive transcription factor SHINE 2-like OS=Momordica charantia OX=3673 GN=LOC111006480 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.1e-87
Identity = 168/194 (86.60%), Postives = 175/194 (90.21%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT
Sbjct: 82  MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 141

Query: 61  NFPASKDQSDQ----HGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIW 120
           NFPASK+Q+++     G+SPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIG+W
Sbjct: 142 NFPASKNQAEEGRHGDGSSPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 201

Query: 121 QKRAGPRAASNWVMRIELGKKETPLLSLSPLPEL--VSQEADGLGNGIDEEDRIAMQMIE 180
           QKRAG RAASNWVMRIELGKKET   + SP P L   S EADG  NGIDEEDRIAMQMIE
Sbjct: 202 QKRAGTRAASNWVMRIELGKKETETETPSPSPSLESASGEADGHRNGIDEEDRIAMQMIE 261

Query: 181 ELLNWNYPLPSTSS 189
           ELLNWN PLPSTSS
Sbjct: 262 ELLNWNCPLPSTSS 275

[Close]

BLAST of Sed0021486 vs. TAIR 10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-60
Identity = 120/189 (63.49%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+SRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAA+LMNGQNAKT
Sbjct: 1   MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60

Query: 61  NFPASKDQSDQHGA----SPL-SPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGI 120
           NFP  K +          SPL SPK+LSELL+ KLRK CK+ +PSLTCLRLD+D++HIG+
Sbjct: 61  NFPVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGV 120

Query: 121 WQKRAGPRAASNWVMRIELG---KKETPLLSLSPL-PELVSQEADGLGNGIDEEDRIAMQ 180
           WQKRAG + +  WVMR+ELG    +    L L+ +  + V +E +     I +ED++AM+
Sbjct: 121 WQKRAGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEKEEEEEEAIISDEDQLAME 180

[Close]

BLAST of Sed0021486 vs. TAIR 10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.8e-60
Identity = 114/185 (61.62%), Postives = 142/185 (76.76%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAE AARAYDQAA+LMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPASK---DQSDQHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIWQ 120
           NFP  K     S +  ++  SPK+LSELL+ KLRK CK+ +P LTCLRLD+D++HIG+WQ
Sbjct: 61  NFPVIKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQ 120

Query: 121 KRAGPRAASNWVMRIELGKKETPLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIEELL 180
           KRAG + + NWV  +ELG K    ++  P  ++ + +       + E+D++AMQMIEELL
Sbjct: 121 KRAGSKTSPNWVKLVELGDK----VNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEELL 180

Query: 181 NWNYP 183
           NW  P
Sbjct: 181 NWTCP 181

[Close]

BLAST of Sed0021486 vs. TAIR 10
Match: AT5G25390.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 218.0 bits (554), Expect = 6.4e-57
Identity = 111/185 (60.00%), Postives = 139/185 (75.14%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV+S+KFRGVRQRQWGSWVSEIRHPLL   VWLGTFDTAE AARAYDQAA+LMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLL---VWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPASK---DQSDQHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIWQ 120
           NFP  K     S +  ++  SPK+LSELL+ KLRK CK+ +P LTCLRLD+D++HIG+WQ
Sbjct: 61  NFPVIKSNGSNSLEINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVWQ 120

Query: 121 KRAGPRAASNWVMRIELGKKETPLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIEELL 180
           KRAG + + NWV  +ELG K    ++  P  ++ + +       + E+D++AMQMIEELL
Sbjct: 121 KRAGSKTSPNWVKLVELGDK----VNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEELL 178

Query: 181 NWNYP 183
           NW  P
Sbjct: 181 NWTCP 178

[Close]

BLAST of Sed0021486 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-55
Identity = 108/201 (53.73%), Postives = 143/201 (71.14%), Query Frame = 0


Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60
           MV ++KFRGVRQR WGSWV+EIRHPLLKRR+WLGTF+TAE+AARAYD+AA+LM+G+NAKT
Sbjct: 1   MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60

Query: 61  NFPASKDQSDQHG------------ASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 120
           NFP + + + +              +S  S  +LS +LS KLRKCCK+PSPSLTCLRLD+
Sbjct: 61  NFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDT 120

Query: 121 DNAHIGIWQKRAGPRAASNWVMRIELG---------KKETPLLSLSPLPELVSQEADGLG 180
            ++HIG+WQKRAG ++ S+WVM +ELG          K +    L+P  E+  +      
Sbjct: 121 ASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEV--EIGGSRE 180

[Close]

BLAST of Sed0021486 vs. TAIR 10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-24
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPA 64
          ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAEDAARAYD+AA LM G  A+TNFP 
Sbjct: 6  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP- 65

Query: 65 SKDQSDQHGASPLSPKALSELLSTKLRKC 94
               + +     S K LS  L+ KL KC
Sbjct: 66 ----YNPNAIPTSSSKLLSATLTAKLHKC 89

The following BLAST results are available for this feature:

BLAST of Sed0021486 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031792.1	6.4e-91	88.66	Ethylene-responsive transcription factor SHINE 3, partial [Cucurbita argyrosperm...	[more]
XP_022940113.1	6.4e-91	88.66	ethylene-responsive transcription factor SHINE 2-like isoform X1 [Cucurbita mosc...	[more]
XP_023524391.1	5.4e-90	88.54	ethylene-responsive transcription factor SHINE 2-like [Cucurbita pepo subsp. pep...	[more]
XP_022981248.1	7.1e-90	87.63	ethylene-responsive transcription factor SHINE 2-like isoform X1 [Cucurbita maxi...	[more]
XP_038899931.1	3.0e-88	88.02	ethylene-responsive transcription factor SHINE 2-like isoform X3 [Benincasa hisp...	[more]

BLAST of Sed0021486 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFN7	2.3e-59	63.49	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q3E958	3.9e-59	61.62	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q9XI33	2.9e-54	53.73	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q94AW5	2.0e-23	62.92	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ...	[more]
P16146	3.6e-20	56.18	Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1	[more]

BLAST of Sed0021486 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FNE0	3.1e-91	88.66	ethylene-responsive transcription factor SHINE 2-like isoform X1 OS=Cucurbita mo...	[more]
A0A6J1J1K6	3.4e-90	87.63	ethylene-responsive transcription factor SHINE 2-like isoform X1 OS=Cucurbita ma...	[more]
A0A6J1FE03	1.2e-87	86.98	ethylene-responsive transcription factor SHINE 2 isoform X2 OS=Cucurbita moschat...	[more]
A0A6J1F8L5	1.2e-87	86.98	ethylene-responsive transcription factor SHINE 2 isoform X1 OS=Cucurbita moschat...	[more]
A0A6J1BYX9	2.1e-87	86.60	ethylene-responsive transcription factor SHINE 2-like OS=Momordica charantia OX=...	[more]

BLAST of Sed0021486 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11190.1	1.6e-60	63.49	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.2	2.8e-60	61.62	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.1	6.4e-57	60.00	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	2.1e-55	53.73	Integrase-type DNA-binding superfamily protein	[more]
AT5G25190.1	1.4e-24	62.92	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 29..45 score: 72.19 coord: 7..18 score: 60.91
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 6..69 e-value: 7.4E-40 score: 148.4
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 6..55 e-value: 3.7E-13 score: 49.5
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 6..63 score: 21.904358
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 6..65 e-value: 7.29953E-34 score: 112.75
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 5..65 e-value: 4.7E-27 score: 95.9
None	No IPR available	PANTHER	PTHR31194:SF13	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2	coord: 1..186
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 1..186
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 6..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021486.1	Sed0021486.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity