Sed0021481 (gene) Chayote v1

Overview


Name	Sed0021481
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Retrotran_gag_3 domain-containing protein
Location	LG05: 9858977 .. 9862293 (+)
RNA-Seq Expression	Sed0021481
Synteny	Sed0021481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCTTTCTCTCTCAATTCACATGGTATCAAAGCAGCACATGCCTGAACCTAATTGGCTTCTCTTGCCCACTAATCTTCTCTCTCATCAATCTACGCTTCACTTTCTTAAAAATTCCCAATTTCTTCTCCTTCATTGAAATCCCTAATTTCTGCTTTTTAAAATCCCTAAAATTTCTTGCGATCTTCTTGCGTTTCCATGGCGAATATCACTTTTGTTCCTTCCTCTTCGATTCATCTATTAACAAATATCTGCAATCTTGTGTCTGTAAGATTGGATTCCACAAACTACATCCTCTGGAGGTATCAAATTTCTTCTCTGCTCAAAGCCCATAAGCTGTATGGTTACATAGATGGTAAAATCGCTGAACCAAAAGTCTCAACAGGAGAAGAAGGTGAAGCTTCAACAAAATCTGCAGAATATGAACTCTGGTTTGAGAAAGATCAAGCGCTTATCACTCTACTGAATGCGACGCTCTCACAAACGGCCCTTTCCTTTGCGATCAGATCCAAAACTTCTAAAGCATTATGGGAGACGCTGGAAAAATGCTACTCTTCTTCTACAAGAACGAATATTGTTGGGCTGAAATCTGAACTTCAGAGTATTTCCAAGAAACAAAGTGAGTCAATTGATAACTATGTTCAAAGAATATTAACTATCGTTCATAAGCTAGCTGCAGTAGAAATCAAGATTGATCAAGAAGATCTAGTTATTTACACAATCAATGGTTTTCCTTCATCTTATAACATTTTCAAGACTTCTTTACGAACTCGTGCAACCACTATTTCTTTTGAAGAACTACACTCATTATTGAGAATAGAGGAAAATGAGTTAGATATTCAATCCAAGAAAGATGATTCTGCAGCAATTCAGACTCTTGCAATGAACATGTATACAAACAATCATGGAGGATGGCGCAGTTCCAATCGGGGAAGAGGACGAAACAATGGAAATCGTGGTGGTCGTGGACAGTACAATCAAACTCCAACTTCAAAAGTCAAAACTCCTATTCTAATAATTCAAACTCCAACCTCAATAATCAAGTCTCCTACTCGAACAATCAGTTTTCTTATCTGAATTCATATTCATCTGGTAATATCTCGACAGTGAATACGGCGGTTCCAAATGCTTATCCGAGTGCCTTTCCAGAATCATTGCCTTGTCAAATATGTGGAAAACTTGGGCATAATGCTCTTGACTGTTACAATCGTATGAGTTTCTCTTACCAAGGACGCATTCCTCCATCCAAATTAGCTGTCATGGCTGCCTCGTCATCAAACTCAGGTAACTCTTATTCAAGATCTTCCTCTGATCAAGAACGTGGGGTGTGGCTTTCAGATTCTGGCTGCAATGCTCACCTATCTAGTGATTTTACAAACTTCCAACATTCTTCCACTTATAAGGGAGAAGACAACATTCTTGTTGGCAATGGTGAACAACTCAATATTACTCATCAAGGAGATGTTATTTTATCGACTCCTACTCATTCTTTAATTTTGTCAAATCTTTTACGCGTACCTCATATATCTAACAATCTTTTGTCTGTTCACCAACTTTGTGCTGATAATAATTGTAGAATTATTTTTTATGCTCATAATTTTTTGATTTAGGACAAACTCTTTACTATGGACCTAGCAAAAATGGCCTTTATCCAATCTACTCAAATAATTCTCCAACTCTTGTGGCTCACACTGGAATTAAAGGGTCAATTGTTGATTGGCATGCTAGGCTTGGTCATCCAAGTGATGTTGTCCTTAAGCAAGTCTTAGGCACTTTTAATTCCCATGTCAAAGGAGATCTACATTTTTGTAAAGATTGTATTGCTGGAAAAATGATTCGACAACAGTTTTCTGATTCTGTTTCTTTTACTACTAAACCACTAGAATTACTGCATAGTGATGTATGAGGCCCTGCGCCTGAAGTTTCAATAAATGGTAAAAAATACTACATTTCAATAATAGATGATTTTTCTCGATATTGTTGGTTATTTCCTATTGCTCTTAAATCTGACTCTGCCTCTGTCATTTTAAACTTTATCAATTTAATTGAGAATACCTTATCTTTAAAAGTAAAAAGGTTTAGAAGTGATGGTGGAGGAGAATTTCTAAACAATACACTTAAAACTTTTTTTACAAATAAAGGAATTCATCATGAAATTTCTTGTCCAAGGTTAACCCCTGAACAAAATGGGATAGCCGAGAGAAAACATAGGCACCTTACTGAAACTTCAATCTCTATTCTATCAAAATCCAAGGTTCCTAATAATTTTTGGCCATTTGCATATTCTACTGCTGCCTTTATTATAAATCGCTTGCCAACCACTGTGCTTCAAAACAAGACACCCTTTGAAATGTTATATGGTACATTGCCTGATTACTCTAGTCTGAAAGTTTTTGGTTGTTCTTGCTTTCCTTTACTTAGACCATATAATGAACACAAACTACAACCTCGTACCTTGGAATGTGTTTTTTTAGGTTATCCTAATAACTACAAAGGCTTTCTCTGTTTTGAACCACAAAGTAATAAGTTTTTCATCTCTAGGCATGTTGTTTTTTATGAGACATCCTTTCCCTTTTTCTATTGCATCTACTAATGTTTCCCCTGCAGATCCGAACACTCAACCTACTGTGATAGTACCAGACTCCTGTTTTGCTGGTCAAAATCCTCTGTCTCCATTTTCTCTGCCAACTATACAGTCTTCATCTCCTAGTAGTAATCTGGTGGATCAAACTACTTCTACCCTTCACACTGAAGGTTTGTCTCCTGAGGTAACACCTTCCATTTCTATTCCTACTTCATTTGTACAGGAAGCTACATCTTTTGATTTATCATCAGAACCAACAAGTGAAATTGGTGTTCCTTCTCCAACACCTTCTATTCCTCCACTCTCTGTCTCTATAAATCCTATAACCAATATACATCCTATGCAAACAAGGGGTTGTAACGGCCCAGTTTTCTTTTCCGGTTCTCGAGGTGCTTCCGGTTCAGTTTCAGTGGTTCGGTTGGGCCGTTAGAGCTGTTTTGTCCCTTAAGGGCATTTTGGTCTTTTGCTCCCCGGGCAGGATTTGTGGATTTTCAGGGCTTCGAGGCAGCTCCTGCCTTTGTTGAGGTTTGTTTGTTGGTGGCTGCGAGTCTCGAGATGTTTGGGCTTTTCGTTTGGGTGTTTCCTTCGGGATTCGAGCCCGGGGCCCTTAGTGTTGCTTTGGGAGTTGGGTTTAAGTGAGATTTATTTATTGGAAAATGTTGCTTCAGTCGGGTCTCGAAGGAGGAAGCCGGGAAATGGGATTTTAAGGATTTTAAGGATTTTAAGGATTTT

mRNA sequence

ATTCTCTTTCTCTCTCAATTCACATGGTATCAAAGCAGCACATGCCTGAACCTAATTGGCTTCTCTTGCCCACTAATCTTCTCTCTCATCAATCTACGCTTCACTTTCTTAAAAATTCCCAATTTCTTCTCCTTCATTGAAATCCCTAATTTCTGCTTTTTAAAATCCCTAAAATTTCTTGCGATCTTCTTGCGTTTCCATGGCGAATATCACTTTTGTTCCTTCCTCTTCGATTCATCTATTAACAAATATCTGCAATCTTGTGTCTGTAAGATTGGATTCCACAAACTACATCCTCTGGAGGTATCAAATTTCTTCTCTGCTCAAAGCCCATAAGCTGTATGGTTACATAGATGGTAAAATCGCTGAACCAAAAGTCTCAACAGGAGAAGAAGGTGAAGCTTCAACAAAATCTGCAGAATATGAACTCTGGTTTGAGAAAGATCAAGCGCTTATCACTCTACTGAATGCGACGCTCTCACAAACGGCCCTTTCCTTTGCGATCAGATCCAAAACTTCTAAAGCATTATGGGAGACGCTGGAAAAATGCTACTCTTCTTCTACAAGAACGAATATTGTTGGGCTGAAATCTGAACTTCAGAGTATTTCCAAGAAACAAAGTGAGTCAATTGATAACTATGTTCAAAGAATATTAACTATCGTTCATAAGCTAGCTGCAGTAGAAATCAAGATTGATCAAGAAGATCTAGTTATTTACACAATCAATGGTTTTCCTTCATCTTATAACATTTTCAAGACTTCTTTACGAACTCGTGCAACCACTATTTCTTTTGAAGAACTACACTCATTATTGAGAATAGAGGAAAATGAGTTAGATATTCAATCCAAGAAAGATGATTCTGCAGCAATTCAGACTCTTGCAATGAACATGTATACAAACAATCATGGAGGATGGCGCAGTTCCAATCGGGGAAGAGGACGAAACAATGGAAATCGTGGTGGTCGTGGACAGTACAATCAAACTCCAACTTCAAAAGTCAAAACTCCTATTCTAATAATTCAAACTCCAACCTCAATAATCAAGTCTCCTACTCGAACAATCAGTTTTCTTATCTGAATTCATATTCATCTGGTAATATCTCGACAGTGAATACGGCGGTTCCAAATGCTTATCCGAGTGCCTTTCCAGAATCATTGCCTTGTCAAATATGTGGAAAACTTGGGCATAATGCTCTTGACTGTTACAATCGTATGAGTTTCTCTTACCAAGGACGCATTCCTCCATCCAAATTAGCTGTCATGGCTGCCTCGTCATCAAACTCAGATCCGAACACTCAACCTACTGTGATAGTACCAGACTCCTGTTTTGCTGGTCAAAATCCTCTGTCTCCATTTTCTCTGCCAACTATACAGTCTTCATCTCCTAGTAGTAATCTGGTGGATCAAACTACTTCTACCCTTCACACTGAAGGTTTGTCTCCTGAGGTAACACCTTCCATTTCTATTCCTACTTCATTTGTACAGGAAGCTACATCTTTTGATTTATCATCAGAACCAACAAGTGAAATTGGTGTTCCTTCTCCAACACCTTCTATTCCTCCACTCTCTGTCTCTATAAATCCTATAACCAATATACATCCTATGCAAACAAGGGGTTGTAACGGCCCAGTTTTCTTTTCCGGTTCTCGAGGTGCTTCCGGTTCAGTTTCAGTGGTTCGGTTGGGCCGTTAGAGCTGTTTTGTCCCTTAAGGGCATTTTGGTCTTTTGCTCCCCGGGCAGGATTTGTGGATTTTCAGGGCTTCGAGGCAGCTCCTGCCTTTGTTGAGGTTTGTTTGTTGGTGGCTGCGAGTCTCGAGATGTTTGGGCTTTTCGTTTGGGTGTTTCCTTCGGGATTCGAGCCCGGGGCCCTTAGTGTTGCTTTGGGAGTTGGGTTTAAGTGAGATTTATTTATTGGAAAATGTTGCTTCAGTCGGGTCTCGAAGGAGGAAGCCGGGAAATGGGATTTTAAGGATTTTAAGGATTTTAAGGATTTT

Coding sequence (CDS)

ATGGCGAATATCACTTTTGTTCCTTCCTCTTCGATTCATCTATTAACAAATATCTGCAATCTTGTGTCTGTAAGATTGGATTCCACAAACTACATCCTCTGGAGGTATCAAATTTCTTCTCTGCTCAAAGCCCATAAGCTGTATGGTTACATAGATGGTAAAATCGCTGAACCAAAAGTCTCAACAGGAGAAGAAGGTGAAGCTTCAACAAAATCTGCAGAATATGAACTCTGGTTTGAGAAAGATCAAGCGCTTATCACTCTACTGAATGCGACGCTCTCACAAACGGCCCTTTCCTTTGCGATCAGATCCAAAACTTCTAAAGCATTATGGGAGACGCTGGAAAAATGCTACTCTTCTTCTACAAGAACGAATATTGTTGGGCTGAAATCTGAACTTCAGAGTATTTCCAAGAAACAAAGTGAGTCAATTGATAACTATGTTCAAAGAATATTAACTATCGTTCATAAGCTAGCTGCAGTAGAAATCAAGATTGATCAAGAAGATCTAGTTATTTACACAATCAATGGTTTTCCTTCATCTTATAACATTTTCAAGACTTCTTTACGAACTCGTGCAACCACTATTTCTTTTGAAGAACTACACTCATTATTGAGAATAGAGGAAAATGAGTTAGATATTCAATCCAAGAAAGATGATTCTGCAGCAATTCAGACTCTTGCAATGAACATGTATACAAACAATCATGGAGGATGGCGCAGTTCCAATCGGGGAAGAGGACGAAACAATGGAAATCGTGGTGGTCGTGGACAGTACAATCAAACTCCAACTTCAAAAGTCAAAACTCCTATTCTAATAATTCAAACTCCAACCTCAATAATCAAGTCTCCTACTCGAACAATCAGTTTTCTTATCTGA

Protein sequence

MANITFVPSSSIHLLTNICNLVSVRLDSTNYILWRYQISSLLKAHKLYGYIDGKIAEPKVSTGEEGEASTKSAEYELWFEKDQALITLLNATLSQTALSFAIRSKTSKALWETLEKCYSSSTRTNIVGLKSELQSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQEDLVIYTINGFPSSYNIFKTSLRTRATTISFEELHSLLRIEENELDIQSKKDDSAAIQTLAMNMYTNNHGGWRSSNRGRGRNNGNRGGRGQYNQTPTSKVKTPILIIQTPTSIIKSPTRTISFLI

Homology

[Close]

BLAST of Sed0021481 vs. NCBI nr
Match: KAG6588985.1 (Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-53
Identity = 129/267 (48.31%), Postives = 174/267 (65.17%), Query Frame = 0


Query: 10  SSIHLLTNICNLVSVRLDSTNYILWRYQISSLLKAHKLYGYIDGKIAEPKVSTGEEGEAS 69
           S I LL+NICNL+S++LDSTNY+LW++Q+++LLKAHKL+G+IDG    P           
Sbjct: 18  SPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFIDGTQPCP----------- 77

Query: 70  TKSAEYELWFEKDQALITLLNATLSQTALSFAIRSKTSKALWETLEKCYSSSTRTNIVGL 129
             +  Y+ WF KDQAL+T++NATLS  AL++ + S TSK +W  L K YSSS+R+N+V L
Sbjct: 78  ISNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNL 137

Query: 130 KSELQSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQEDLVIYTINGFPSSYNIFKTSL 189
           KS+LQ+ISKK  ESID Y++RI  I  KLA V   ++ EDL+IY +NG P+ YN F+TS+
Sbjct: 138 KSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSM 197

Query: 190 RTRATTISFEELHSLLRIEENELDIQSKKDD--------SAAIQTLAMNMYTNNHGGWRS 249
           RTR+T ++FEELH LL+ EE+ L  QSK+DD         A+ Q+L     T N+   R 
Sbjct: 198 RTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALLASSQSLMSYASTFNNNFVRG 257

Query: 250 SNRGRGRNNG-------NRGGRGQYNQ 262
             RGRG  +G        RGG     Q
Sbjct: 258 RGRGRGHGHGCSSFDTQGRGGGSSQQQ 273

[Close]

BLAST of Sed0021481 vs. NCBI nr
Match: KAG7015254.1 (hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-53
Identity = 129/267 (48.31%), Postives = 174/267 (65.17%), Query Frame = 0


Query: 10  SSIHLLTNICNLVSVRLDSTNYILWRYQISSLLKAHKLYGYIDGKIAEPKVSTGEEGEAS 69
           S I LL+NICNL+S++LDSTNY+LW++Q+++LLKAHKL+G+IDG    P           
Sbjct: 18  SPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFIDGTQPCP----------- 77

Query: 70  TKSAEYELWFEKDQALITLLNATLSQTALSFAIRSKTSKALWETLEKCYSSSTRTNIVGL 129
             +  Y+ WF KDQAL+T++NATLS  AL++ + S TSK +W  L K YSSS+R+N+V L
Sbjct: 78  ISNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNL 137

Query: 130 KSELQSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQEDLVIYTINGFPSSYNIFKTSL 189
           KS+LQ+ISKK  ESID Y++RI  I  KLA V   ++ EDL+IY +NG P+ YN F+TS+
Sbjct: 138 KSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSM 197

Query: 190 RTRATTISFEELHSLLRIEENELDIQSKKDD--------SAAIQTLAMNMYTNNHGGWRS 249
           RTR+T ++FEELH LL+ EE+ L  QSK+DD         A+ Q+L     T N+   R 
Sbjct: 198 RTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALLASSQSLMSYASTFNNNFVRG 257

Query: 250 SNRGRGRNNG-------NRGGRGQYNQ 262
             RGRG  +G        RGG     Q
Sbjct: 258 RGRGRGHGHGCSSFDTQGRGGGSSQQQ 273

[Close]

BLAST of Sed0021481 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 219.9 bits (559), Expect = 2.8e-53
Identity = 129/272 (47.43%), Postives = 178/272 (65.44%), Query Frame = 0


Query: 10  SSIHLLTNICNLVSVRLDSTNYILWRYQISSLLKAHKLYGYIDGKIAEPKVSTGEEGEAS 69
           S I LL+NICNLVS+RLDST++ILW++Q++++LKAHKL+G+IDG ++ P        E  
Sbjct: 35  SPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETE 94

Query: 70  TK----------SAEYELWFEKDQALITLLNATLSQTALSFAIRSKTSKALWETLEKCYS 129
           ++          +  +E W  KDQAL+TL+NATLS  AL++ +RS TSK +WE LEK YS
Sbjct: 95  SQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSKQVWEVLEKHYS 154

Query: 130 SSTRTNIVGLKSELQSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQEDLVIYTINGFP 189
           S++RTN+V LKS+LQSI KK  ESID YV+RI  I  K A V I I+ E L+IY +NG  
Sbjct: 155 SNSRTNVVNLKSDLQSIVKKTEESIDAYVKRIKEIKDKFANVSITINDEYLLIYALNGLS 214

Query: 190 SSYNIFKTSLRTRATTISFEELHSLLRIEENELDIQSKKDDSA-------AIQTLAMNMY 249
           + YN   TS+RTRA ++SFEELH  ++ EE+ ++ Q K++D         A    + N  
Sbjct: 215 TEYNTLSTSMRTRAQSVSFEELHVFMKSEESAIEKQMKREDLVTQPNALFASSPQSQNRT 274

Query: 250 TNNHGGWRSSNRGRGRNNGNRGGRGQYNQTPT 265
           +  H   +S +RGRG+NN    GRG+ N  PT
Sbjct: 275 SAFHPN-QSHDRGRGKNN----GRGKANFAPT 301

[Close]

BLAST of Sed0021481 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 2.0e-51
Identity = 128/274 (46.72%), Postives = 181/274 (66.06%), Query Frame = 0


Query: 1   MANITFVPSSS--------IHLLTNICNLVSVRLDSTNYILWRYQISSLLKAHKLYGYID 60
           M++ T +PSSS        I LL+NICNL+S+RLDSTN++LW++Q++++LKAHKLYG+ID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GKIAEPKVSTGEEGEAST----KSAEYELWFEKDQALITLLNATLSQTALSFAIRSKTSK 120
           G    P   T      ST     +  YE W  KDQAL+T++NATLS  AL++ + S +SK
Sbjct: 61  GTNPCPP-RTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSK 120

Query: 121 ALWETLEKCYSSSTRTNIVGLKSELQSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQE 180
            +W+ L K YSS +R+N+V LKS+LQ+I KK  ESID Y++RI  I  KLA V   I++E
Sbjct: 121 QVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEE 180

Query: 181 DLVIYTINGFPSSYNIFKTSLRTRATTISFEELHSLLRIEENELDIQSKKDDSAAIQTLA 240
           DL+IY +NG P+ YN F+TS+RTR+  ++FEELH LLR EE+ L  QSK DDS    T+ 
Sbjct: 181 DLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVL 240

Query: 241 MNMYTN--NHGGWRSSNRGRGRNNGNRGGRGQYN 261
           ++   +  +      +N  RG  +G   G G+++
Sbjct: 241 LSSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFS 273

[Close]

BLAST of Sed0021481 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 2.0e-51
Identity = 128/274 (46.72%), Postives = 181/274 (66.06%), Query Frame = 0


Query: 1   MANITFVPSSS--------IHLLTNICNLVSVRLDSTNYILWRYQISSLLKAHKLYGYID 60
           M++ T +PSSS        I LL+NICNL+S+RLDSTN++LW++Q++++LKAHKLYG+ID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GKIAEPKVSTGEEGEAST----KSAEYELWFEKDQALITLLNATLSQTALSFAIRSKTSK 120
           G    P   T      ST     +  YE W  KDQAL+T++NATLS  AL++ + S +SK
Sbjct: 61  GTNPCPP-RTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSK 120

Query: 121 ALWETLEKCYSSSTRTNIVGLKSELQSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQE 180
            +W+ L K YSS +R+N+V LKS+LQ+I KK  ESID Y++RI  I  KLA V   I++E
Sbjct: 121 QVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEE 180

Query: 181 DLVIYTINGFPSSYNIFKTSLRTRATTISFEELHSLLRIEENELDIQSKKDDSAAIQTLA 240
           DL+IY +NG P+ YN F+TS+RTR+  ++FEELH LLR EE+ L  QSK DDS    T+ 
Sbjct: 181 DLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVL 240

Query: 241 MNMYTN--NHGGWRSSNRGRGRNNGNRGGRGQYN 261
           ++   +  +      +N  RG  +G   G G+++
Sbjct: 241 LSSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFS 273

[Close]

BLAST of Sed0021481 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.6e-14
Identity = 67/269 (24.91%), Postives = 128/269 (47.58%), Query Frame = 0


Query: 14  LLTNICNLVSVRLDSTNYILWRYQISSLLKAHKLYGYIDGKIAEPKVSTGEEGEASTKSA 73
           L  N+ N+   +L STNY++W  Q+ +L   ++L G++DG    P  + G +  A   + 
Sbjct: 16  LNVNMSNV--TKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDA-APRVNP 75

Query: 74  EYELWFEKDQALITLLNATLSQTALSFAIRSKTSKALWETLEKCYSSSTRTNIVGLKSEL 133
           +Y  W  +D+ + + +   +S +      R+ T+  +WETL K Y++ +  ++  L+++L
Sbjct: 76  DYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQL 135

Query: 134 QSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQEDLVIYTINGFPSSYNIFKTSLRTRA 193
           +  + K +++ID+Y+Q ++T   +LA +   +D ++ V   +   P  Y      +  + 
Sbjct: 136 KQWT-KGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKD 195

Query: 194 TTISFEELHSLLRIEENELDIQSKKDDSAAIQTLAMNMY-------TNNHGGWRSSNRGR 253
           T  +  E+H  L   E+++   S    SA +  +  N         TNN+     +NR  
Sbjct: 196 TPPTLTEIHERLLNHESKILAVS----SATVIPITANAVSHRNTTTTNNNNNGNRNNRYD 255

Query: 254 GRNNGNRGGRGQYNQT---PTSKVKTPIL 273
            RNN N     Q + T   P +    P L
Sbjct: 256 NRNNNNNSKPWQQSSTNFHPNNNQSKPYL 276

[Close]

BLAST of Sed0021481 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.8e-09
Identity = 57/230 (24.78%), Postives = 105/230 (45.65%), Query Frame = 0


Query: 34  WRYQISSLLKAHKLYGYIDGKIAEPKVSTGEEGEASTKSAEYELWFEKDQALITLLNATL 93
           W+ ++  LL    L+  +D    +P     E+            W + D+   + +   L
Sbjct: 20  WQRRMRDLLIQQGLHKVLDVDSKKPDTMKAED------------WADLDERAASAIRLHL 79

Query: 94  SQTALSFAIRSKTSKALWETLEKCYSSSTRTNIVGLKSELQSISKKQSESIDNYVQRILT 153
           S   ++  I   T++ +W  LE  Y S T TN + LK +L ++   +  +  +++     
Sbjct: 80  SDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNG 139

Query: 154 IVHKLAAVEIKIDQEDLVIYTINGFPSSYNIFKTSLRTRATTISFEELHSLLRIEENELD 213
           ++ +LA + +KI++ED  I  +N  PSSY+   T++    TTI  +++ S L + E ++ 
Sbjct: 140 LITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNE-KMR 199

Query: 214 IQSKKDDSAAIQTLAMNMY---TNNHGGWRSSNRGRGRNNGNRGGRGQYN 261
            + +    A I       Y   +NN+G  RS  RG+ +N      R  YN
Sbjct: 200 KKPENQGQALITEGRGRSYQRSSNNYG--RSGARGKSKNRSKSRVRNCYN 234

[Close]

BLAST of Sed0021481 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.6e-09
Identity = 60/255 (23.53%), Postives = 108/255 (42.35%), Query Frame = 0


Query: 16  TNICNLVS---VRLDSTNYILWRYQISSLLKAHKLYGYIDGKIAEPKVSTGEEGEASTKS 75
           TNI N+      +L STNY++W  Q+ +L   ++L G++DG    P  + G +      +
Sbjct: 13  TNILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDA-VPRVN 72

Query: 76  AEYELWFEKDQALITLLNATLSQTALSFAIRSKTSKALWETLEKCYSSSTRTNIVGLKSE 135
            +Y  W  +D+ + + +   +S +      R+ T+  +WETL K Y++ +  ++  L   
Sbjct: 73  PDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQL--- 132

Query: 136 LQSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQEDLVIYTINGFPSSYNIFKTSLRTR 195
                            R +T   +LA +   +D ++ V   +   P  Y      +  +
Sbjct: 133 -----------------RFITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAK 192

Query: 196 ATTISFEELHSLLRIEENELDIQSKKDDSAAIQTLAMNMYT--NNHGGWRSSNRGRGRNN 255
            T  S  E+H  L   E++L       +SA +  +  N+ T  N +     +NRG  RN 
Sbjct: 193 DTPPSLTEIHERLINRESKL----LALNSAEVVPITANVVTHRNTNTNRNQNNRGDNRNY 242

Query: 256 GNRGGRGQYNQTPTS 266
            N   R    Q  +S
Sbjct: 253 NNNNNRSNSWQPSSS 242

[Close]

BLAST of Sed0021481 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 129/272 (47.43%), Postives = 178/272 (65.44%), Query Frame = 0


Query: 10  SSIHLLTNICNLVSVRLDSTNYILWRYQISSLLKAHKLYGYIDGKIAEPKVSTGEEGEAS 69
           S I LL+NICNLVS+RLDST++ILW++Q++++LKAHKL+G+IDG ++ P        E  
Sbjct: 35  SPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVSAPSQFLASSSETE 94

Query: 70  TK----------SAEYELWFEKDQALITLLNATLSQTALSFAIRSKTSKALWETLEKCYS 129
           ++          +  +E W  KDQAL+TL+NATLS  AL++ +RS TSK +WE LEK YS
Sbjct: 95  SQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEALAYVVRSGTSKQVWEVLEKHYS 154

Query: 130 SSTRTNIVGLKSELQSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQEDLVIYTINGFP 189
           S++RTN+V LKS+LQSI KK  ESID YV+RI  I  K A V I I+ E L+IY +NG  
Sbjct: 155 SNSRTNVVNLKSDLQSIVKKTEESIDAYVKRIKEIKDKFANVSITINDEYLLIYALNGLS 214

Query: 190 SSYNIFKTSLRTRATTISFEELHSLLRIEENELDIQSKKDDSA-------AIQTLAMNMY 249
           + YN   TS+RTRA ++SFEELH  ++ EE+ ++ Q K++D         A    + N  
Sbjct: 215 TEYNTLSTSMRTRAQSVSFEELHVFMKSEESAIEKQMKREDLVTQPNALFASSPQSQNRT 274

Query: 250 TNNHGGWRSSNRGRGRNNGNRGGRGQYNQTPT 265
           +  H   +S +RGRG+NN    GRG+ N  PT
Sbjct: 275 SAFHPN-QSHDRGRGKNN----GRGKANFAPT 301

[Close]

BLAST of Sed0021481 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 9.8e-52
Identity = 128/274 (46.72%), Postives = 181/274 (66.06%), Query Frame = 0


Query: 1   MANITFVPSSS--------IHLLTNICNLVSVRLDSTNYILWRYQISSLLKAHKLYGYID 60
           M++ T +PSSS        I LL+NICNL+S+RLDSTN++LW++Q++++LKAHKLYG+ID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GKIAEPKVSTGEEGEAST----KSAEYELWFEKDQALITLLNATLSQTALSFAIRSKTSK 120
           G    P   T      ST     +  YE W  KDQAL+T++NATLS  AL++ + S +SK
Sbjct: 61  GTNPCPP-RTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSK 120

Query: 121 ALWETLEKCYSSSTRTNIVGLKSELQSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQE 180
            +W+ L K YSS +R+N+V LKS+LQ+I KK  ESID Y++RI  I  KLA V   I++E
Sbjct: 121 QVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEE 180

Query: 181 DLVIYTINGFPSSYNIFKTSLRTRATTISFEELHSLLRIEENELDIQSKKDDSAAIQTLA 240
           DL+IY +NG P+ YN F+TS+RTR+  ++FEELH LLR EE+ L  QSK DDS    T+ 
Sbjct: 181 DLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVL 240

Query: 241 MNMYTN--NHGGWRSSNRGRGRNNGNRGGRGQYN 261
           ++   +  +      +N  RG  +G   G G+++
Sbjct: 241 LSSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFS 273

[Close]

BLAST of Sed0021481 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 9.8e-52
Identity = 128/274 (46.72%), Postives = 181/274 (66.06%), Query Frame = 0


Query: 1   MANITFVPSSS--------IHLLTNICNLVSVRLDSTNYILWRYQISSLLKAHKLYGYID 60
           M++ T +PSSS        I LL+NICNL+S+RLDSTN++LW++Q++++LKAHKLYG+ID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GKIAEPKVSTGEEGEAST----KSAEYELWFEKDQALITLLNATLSQTALSFAIRSKTSK 120
           G    P   T      ST     +  YE W  KDQAL+T++NATLS  AL++ + S +SK
Sbjct: 61  GTNPCPP-RTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSK 120

Query: 121 ALWETLEKCYSSSTRTNIVGLKSELQSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQE 180
            +W+ L K YSS +R+N+V LKS+LQ+I KK  ESID Y++RI  I  KLA V   I++E
Sbjct: 121 QVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEE 180

Query: 181 DLVIYTINGFPSSYNIFKTSLRTRATTISFEELHSLLRIEENELDIQSKKDDSAAIQTLA 240
           DL+IY +NG P+ YN F+TS+RTR+  ++FEELH LLR EE+ L  QSK DDS    T+ 
Sbjct: 181 DLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVL 240

Query: 241 MNMYTN--NHGGWRSSNRGRGRNNGNRGGRGQYN 261
           ++   +  +      +N  RG  +G   G G+++
Sbjct: 241 LSSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFS 273

[Close]

BLAST of Sed0021481 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 9.8e-52
Identity = 128/274 (46.72%), Postives = 181/274 (66.06%), Query Frame = 0


Query: 1   MANITFVPSSS--------IHLLTNICNLVSVRLDSTNYILWRYQISSLLKAHKLYGYID 60
           M++ T +PSSS        I LL+NICNL+S+RLDSTN++LW++Q++++LKAHKLYG+ID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GKIAEPKVSTGEEGEAST----KSAEYELWFEKDQALITLLNATLSQTALSFAIRSKTSK 120
           G    P   T      ST     +  YE W  KDQAL+T++NATLS  AL++ + S +SK
Sbjct: 61  GTNPCPP-RTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSK 120

Query: 121 ALWETLEKCYSSSTRTNIVGLKSELQSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQE 180
            +W+ L K YSS +R+N+V LKS+LQ+I KK  ESID Y++RI  I  KLA V   I++E
Sbjct: 121 QVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEE 180

Query: 181 DLVIYTINGFPSSYNIFKTSLRTRATTISFEELHSLLRIEENELDIQSKKDDSAAIQTLA 240
           DL+IY +NG P+ YN F+TS+RTR+  ++FEELH LLR EE+ L  QSK DDS    T+ 
Sbjct: 181 DLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVL 240

Query: 241 MNMYTN--NHGGWRSSNRGRGRNNGNRGGRGQYN 261
           ++   +  +      +N  RG  +G   G G+++
Sbjct: 241 LSSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFS 273

[Close]

BLAST of Sed0021481 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 9.8e-52
Identity = 128/274 (46.72%), Postives = 181/274 (66.06%), Query Frame = 0


Query: 1   MANITFVPSSS--------IHLLTNICNLVSVRLDSTNYILWRYQISSLLKAHKLYGYID 60
           M++ T +PSSS        I LL+NICNL+S+RLDSTN++LW++Q++++LKAHKLYG+ID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GKIAEPKVSTGEEGEAST----KSAEYELWFEKDQALITLLNATLSQTALSFAIRSKTSK 120
           G    P   T      ST     +  YE W  KDQAL+T++NATLS  AL++ + S +SK
Sbjct: 61  GTNPCPP-RTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSK 120

Query: 121 ALWETLEKCYSSSTRTNIVGLKSELQSISKKQSESIDNYVQRILTIVHKLAAVEIKIDQE 180
            +W+ L K YSS +R+N+V LKS+LQ+I KK  ESID Y++RI  I  KLA V   I++E
Sbjct: 121 QVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEE 180

Query: 181 DLVIYTINGFPSSYNIFKTSLRTRATTISFEELHSLLRIEENELDIQSKKDDSAAIQTLA 240
           DL+IY +NG P+ YN F+TS+RTR+  ++FEELH LLR EE+ L  QSK DDS    T+ 
Sbjct: 181 DLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVL 240

Query: 241 MNMYTN--NHGGWRSSNRGRGRNNGNRGGRGQYN 261
           ++   +  +      +N  RG  +G   G G+++
Sbjct: 241 LSSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFS 273

[Close]

BLAST of Sed0021481 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 7.5e-04
Identity = 27/133 (20.30%), Postives = 63/133 (47.37%), Query Frame = 0


Query: 27  DSTNYILWRYQISSLLKAHKLYGYIDGKIAEPKVSTGEEGEASTKSAEYELWFEKDQALI 86
           D  NY+ W+ +  S L+  K +G+IDG + +P             S  Y+ W + +  ++
Sbjct: 38  DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP----------DPFSPLYQPWEQCNAMVM 97

Query: 87  TLLNATLSQTALSFAIRSKTSKALWETLEKCYSSSTRTNIVGLKSELQSISKKQSESIDN 146
             L  +++   L   + ++T+  +WE L + +       I  L+  L ++ ++  +S++ 
Sbjct: 98  YWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATL-RQGGDSVEE 157

Query: 147 YVQRILTIVHKLA 160
           Y  ++  +  +L+
Sbjct: 158 YFGKLSKVWMELS 159

The following BLAST results are available for this feature:

BLAST of Sed0021481 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588985.1	1.3e-53	48.31	Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyr...	[more]
KAG7015254.1	1.3e-53	48.31	hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022150845.1	2.8e-53	47.43	uncharacterized protein LOC111018892 [Momordica charantia]	[more]
XP_008448007.1	2.0e-51	46.72	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	2.0e-51	46.72	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]

BLAST of Sed0021481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	4.6e-14	24.91	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	5.8e-09	24.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	7.6e-09	23.53	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Sed0021481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9L6	1.4e-53	47.43	uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5D3CLI6	9.8e-52	46.72	T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=...	[more]
A0A1S3BI58	9.8e-52	46.72	uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DWT9	9.8e-52	46.72	uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BIR3	9.8e-52	46.72	uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Sed0021481 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	7.5e-04	20.30	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 78..211 e-value: 3.4E-22 score: 78.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..264
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 14..263
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 14..263
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 20..59 e-value: 8.2E-11 score: 41.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021481.1	Sed0021481.1	mRNA