Sed0021446 (gene) Chayote v1

Overview


Name	Sed0021446
Type	gene
Organism	Sechium edule (Chayote v1)
Description	pre-mRNA-splicing factor SPF27 homolog
Location	LG01: 12783123 .. 12789095 (-)
RNA-Seq Expression	Sed0021446
Synteny	Sed0021446

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAGAGACAAAAAACCCCAACTATTTTGCAAACGCAAACTCCATCTTGTCGCAAAAAGCCTCTGCAAATCCAAAAACCTAAGACCTCAGTTGCTGGTTGCGGCGATTATGGCGACTAACAACGGCGACATCCTAATGCTCGAAGCTCCGCCGCTGCCATCGGAACCGGGATGGCGCGTTTCTGCAGATGCGGCGGTAATCGACGCCTTGCCCTACATCGACGACGACTATGCCGATCCAAGGGTCAAAGCTGAGGTCAACCGCTTAGTGGAGGAAGAGATGCGCCGCAGCTCCAAGAGACCCGCCGACTTTCTCAAAGACTTGCCTCCTGTTCCAAAGTTCAAATTCGATGTAAGTTAGGTCGCAATGTCATTTTCCGCCGGAGTTTTTTTCTTCTAGGTTATGCACTTGTAGTTCTGCTTGATTTCCTAGGGTTTCACGGGCTGAAGAACGAATTATTTTGTTTTCACTTGATATATTAGATAATATGTAATTCCAACTTGAAACCAATTGGTAGTGGAGAGTAGCCATATCTCTTAGGATGGTGAAGACTATTCATATTTCTAATATGGGACAGAGGCCCAAGGTGACTGTGTGTAACATGTCCCCTCAAGATGCTGCCACATAGGCTAAGACCATCTTGAATTGGATCTCAAGTTTCGACCGAAATACTCACTTTGACTTACTCGCTTGGGTCAAATCCTATTTTTCTTTTTTCATCGAATATCCACTTAAGCTTATACTGTTTGGGTGGTGTCCAAATCACCAGCTTAGGTTTTTACCCACTTGGATCAGATCAGAATTTGTGAGACTAATATTCACGTGGAGCTCTCATAACATATTAGATAACACGAAGTTCCGACTTGAAGGGACATGTTGGAGTACTCATCTTGTGGTTTTCATCCCACATTGGAAAGATGAGAAATTTTGAACATACTTATAAGAGTTATGAGCTACGCCTTTGACTACCAATTGGTTTTGAGGTGGAACTCCATATTATAATATATTCTAATATTTGCTAGAAAGTTGCTTACGCCGAGTTTGGAAGTGTTTTGAAGCTTCATTTGCTGGTTATGTTCCGAAATTATCAGCTATAATGTTTACTCAAAATCAAAATCAAGGTTGAAAAGATTAAATTATAATCAATCGAAGAACTAGAACACTGAATTTTGCTTATCTGCAAGTTGCAGCGTGTGAAACAATCACTATAGAATCCATTGCTTACTCATTGCTCCATAATTTGTTTTTCCATTACGTAGGGTTGATCTTGAAATGAAAAACTATTACAAAATGTTGTAATATTTGTGATACTTTATTTGATTGACGAGGTTTGGACTCAGGATCATCCAATGCTTGCTAGAGAATATGAACGTGTTAGAGCTGGGAGGCCTCCAATGCCTCTCGACGTTGCAAGATATAAATTGGAGACTCCAGCTTCTAATAAAAAGAACGACGAAACTGCATGGAAGCAGACACTTCAGAAAGCTCAATGCTTACTAAGTCATCAAGTGCTAAGGTTAAGTTCTAGTATGTTTTTTTTAATTGTTTTAGGCACTTAAGACTGTTAAGGAGAGGTTACTGGAACTCCACACATATCTTCATATTAGTATATATTTAATACTGTCAACTTTGGTCATAAACCATCAGACTTTGTTTTTAGTTTTTTTAATCCAGAAGGTCCCGTATCTATGGATATAATTGTCTTCACTTATATTCACACGATCACTCTCTCCTATTACCAAAAGTGGGACTTTGTTTGTACTTTTAAGTTTTAACATTCTTCCCCTCGAACAAAGCACGACGTGTGCCTCCCCTGAATAGATTTTCTACTTCCAACGGATCATCTATTACCATCTACCTCATTTTTCTCTCTCGAGCAAAGAGCTACTCCTCTACTAGTGCGGCTTGATAGTATTATTACTTCTTTACCACTCTAAGCGTTTTTTTTCATCTTTGAGTTTCAAGCACAATGTCAACATTAGACTCACTAATCTTTGTCCAATCATTTCCTTCACCCCCAAACACAAATAATCATTCCCTTTTCTATTCTCCCCCTCATTCCTATTCCCTCCATAATCATTACCATTCTCCTTTTCCCAAACAACTGATGTGGATCTTTGTTTGTTTGCACTCCTTGAAAGGATTTTTATTTTTTAAAACTTAATTTGATAGAGGAGAACAGACAGAGTCGGCTACTTGAACTCATATAGGTCTAATACCAGCAATACAGAGTTAATATTTTCAGAGGTTCTTAGACCATATTTATGGGAGCCTTGTGATTTATACAATTTTGGCTAGAAAAATTACAAAATGCAGAAATTATGCACCCATCCACGAAAACATACATTCGAGAGGTTTTGAAATTGTTTTTTTTTTTTTTTGGTGTCTGGCCTAAGGACGGGCGTGGTTACCTTGATTCAAAAAAAAAGAATGGGGTGTTTTTAACTGCTGGTGATACCTTTATGTCATACTGCAGGCTGGAAAATTTGGATCTGATGTCAAAATATGGTGCTGATGTCTGGAAGCAACACAACAAACAGTTGGAAGCACTTTTATCAAGGTTTGTTATTATGTTTCATATTTTATGTAATCTTTTAGCTTAAAATATTATTTTAGTCACTGTACTATTAAGTTCGTGCCATTTTGATCCTTGTTCTTGATCTCTAATTCTAGTGCATATACTTCCAATAATGCTTAAATAGTGTTCCAACAACAAGTTTCTTGTTAACTTTTAAAAAAAAAACTTATTCTCTATTTTAGCTCTCTCTATAAATTTTAGAAATATGTTCACATTTTATCCTCTCTATGCATTGAAATCATTACTCTTTACTACACTAGTCAGAGGAAATGAAACAACCATATATTGATGTTCCTATGTGCTATTTTGTTAGAACTAAGGGCATGGAGGTACAACCAATCGAACAGGTCATCTATAAGTAAGGCCCCTAGGTGCCTTTTTAATGTACGCATCCATGCTTGAAGACTAGGGTTCATATTTGAGGAGGTTAAAGCACTTCACTGAATTTAAGGATGTAAATACCCAAGAACTTATGGCCCCATTTGATAATTATTCGATTTTTGGTTTTTTAAATGATGTCTATAGTCAATGAAATTGTTTTTGTTTTCTAAAAAACCTATTAATATTACTTCCACGTTCCACCCATGAATGTCATTATTTTTTAATCTATATTTTACCTTTTGTCAAAAATGAACACATTTTGAAATCTAAGGCCTCTATCGATAATCATTTGGTTTTTGAAATTCAAGCTTATTTTCACTCAAATTCTCTACAAGGATTTCATCTTCCCTTAATAAAGTATTTGAATCCTAACTGAAGTTCAAAACCAGAAAATATTTTTGGAAGCTACTTTTTTAGGTCTCATTTGATAACCATTTGGTTTTTTAAATTTAAGCATATTTTTACTCAAACCTCATACAATGTGTTCCACATTTCCTACAATATATCCATCTTTTTTTAAAGAAAGTATGTAGATGGTGCTAACCAACTTTCAAAAACAAGCTTTTGGAAGCTTCTTTTTTTTTGTTTTCAAATTTTGATTTGGTTTCTACAAATATAGGTAAGATGTAAATATCCAAGTAACAAAAAACATATGGTAAGGTAATTGTTGTAGGCTTAAATTTGAAAAACAAAAAATCAAATGGTTATCAAACAAGGTCTTAGTTTTCAAATTTTTGTTTGGTTTTTAACAACATAGGTAAAATGTTGATATCAAAGTAAGGAGTCATATGTTGGAGTAGTTGTTGTTGGCTTATTCTTCAAAAAAAAAAAGCAAAAACTAAAAATAAAATGGTTATCAACCAAGGCCTAAGAAAATAATTTTCAAAAACTTATTTTTGTTTTTGAAATTTGAATAAGAATTCAAATACTTTCTTGAGAGAGAGGTGAGAACCACTGTTTTTATGAGAGAGAAAAAAGCTTAGTTTTCAAAAACCAAAACTAAAGACGAAATAGATATCGAATGGACCTTAACGTTAAGGATCTTCACAATATAATGACATTGAGATTCTGCATGCCTATGCAAGCGAAGCAAGCATGAGCAAATTTTTATACACGTCTCTGTATGAAGTAAATATGAAATTACATTTGATCTGACCAACGCGACCATATATGATTGTTACTTATATTGTCTTGTTGGTATCAGAATGCAAAGATTAGCTCAAGAACAGAATGAGAAGATTGAAAAAGTGAACCGCGAAAGGAAATTCCATCAAGTAAGTAGCATCCCTGTAATTCATATTAGTATTGGCTAGAGCTCCTTGGAATAGTTGATTGATTTTTTATGCAATGAGCAGCAAAACGCTGCATATGAGCTTCATGGTTTGTCCACACAATGGAAGGAGCTTTGCCAGAAAAATATGGAAATTCAAGTGGCATGCTCTCAAATAGAGGGTCAAATCCAGGAACTAAGGAGAGAAGCAGAAGAAAAGTAATCTTGCGTTTTCTATTTTATCTATTCTAGTCATTTCATCGCGTGTTTGACATGTTTAGAACTAATCTTTGGGTTATGAATATGATTTCAGAGGCTGGAATTTGGAAGTCAATGTAGAGAGTGGTTCTATTTCCCTTCCAGTGGCATAAGGTATGCGTTAGATGTCGAATTTAATTCCATTTCACCTCGCACATTAAATTTCTATTACATTACTTGTACCATGTTTGCCTTCGCTGTTTTCTTCTTCTGAATCTTGTGTTCGAATGATTTGTCATCTCTGTGCACCAACTTTAGTCATCTGTCTGCTAAAATCACGTGTTACTGTTTCTAACATAAACCATATCTGTGTACCCGAGTTCGGTTCAATTTTTATTCCCAGTTATCTAAAGGCATGAACTGAGATGAACTCTATTCGACCGTTAATGTCGTTCCTCTCCCTTCTCTCCCCTGCCTTTTCCTAGCTTTAAGAGAAAATACTATAATTCAATATTGGGATCATTTGTAATGACATTTCATAGGCATAAAAACACTTTTCTAACACTTAAAAACCCTTTTTCAAGCACTTGGAGAGTCTGAACGTGCCTAAATTTCTTGAGTGGGTAAGGAGAAAGTTCACCTAAGTAATGACAGAAAATTGGACGACCACAATCATTATAGATAAGTCTGATGGTCAGAAGGATCTTTAGGAACAAAAAAATTATAGATTCAATTCATGGTAGTCATCTGTCTAAAAATTAATTTTTTACATGTTTTATTGACGATCAAATGTTGTAGTTTAAGTCAATTTGTTGGGTTATGATTAAGTCTAAAAACAAAGTGCACACCAGCTGGCCCTAACACTCATAAAAATAAATCCAGATACACGTACCTAGTAATTAATTTTTTTTATAGATTTCTTAGACATTCAAATGTTGTTGGGTTAGTTGGTTTATTTCGATAGAATAGTCGAAGTGCGTGTAAGTTGGTCCAAATACTCTTAGATATAAAAGAAATAACACAGAACAAAATGCAATATGTATCTGATTAATTTTACTGGTAGATTATGACATGATCTTTTTTTTACATCTCAATGGTAAGGGGAGCATCCTAATCATGGTTTTCGCTGCTCAAAACTTAAGGATTGTCGATATCTATTTTTGCCGTTCTCATATGGCTACATGTAAGGTAAGTTTGGTTCTCTGCTTAAATGGGACAAATTTTTTTTTTTTTTCTTTGAATTTATTAAATGGGACAAAGTTGGTTGCTCTTTTTTGGCTTTTAAAATCAAATGTTTGTCTTTGGTCATTTTCGAAATTCATATTGAATTGATTGTATCGGTATCTTTAGTCAAGTAGTTTGAAAAACAGCTACTTCTGCTAACCACGTTACTGGTCAGTTGCTGATTTATATATGCTCTATCACGTTTAAAGTATGAAATTACGTTATAGCAAATTCTTGCATCTTAGTAACTTTTTAAAAATATTCGTATAAGGTGATTGAATCTGTTTTTTTATTTATTTAATTTTCTTTCTAAAATTTTA

mRNA sequence

AAAAGAGAGACAAAAAACCCCAACTATTTTGCAAACGCAAACTCCATCTTGTCGCAAAAAGCCTCTGCAAATCCAAAAACCTAAGACCTCAGTTGCTGGTTGCGGCGATTATGGCGACTAACAACGGCGACATCCTAATGCTCGAAGCTCCGCCGCTGCCATCGGAACCGGGATGGCGCGTTTCTGCAGATGCGGCGGTAATCGACGCCTTGCCCTACATCGACGACGACTATGCCGATCCAAGGGTCAAAGCTGAGGTCAACCGCTTAGTGGAGGAAGAGATGCGCCGCAGCTCCAAGAGACCCGCCGACTTTCTCAAAGACTTGCCTCCTGTTCCAAAGTTCAAATTCGATGATCATCCAATGCTTGCTAGAGAATATGAACGTGTTAGAGCTGGGAGGCCTCCAATGCCTCTCGACGTTGCAAGATATAAATTGGAGACTCCAGCTTCTAATAAAAAGAACGACGAAACTGCATGGAAGCAGACACTTCAGAAAGCTCAATGCTTACTAAGTCATCAAGTGCTAAGGCTGGAAAATTTGGATCTGATGTCAAAATATGGTGCTGATGTCTGGAAGCAACACAACAAACAGTTGGAAGCACTTTTATCAAGAATGCAAAGATTAGCTCAAGAACAGAATGAGAAGATTGAAAAAGTGAACCGCGAAAGGAAATTCCATCAACAAAACGCTGCATATGAGCTTCATGGTTTGTCCACACAATGGAAGGAGCTTTGCCAGAAAAATATGGAAATTCAAGTGGCATGCTCTCAAATAGAGGGTCAAATCCAGGAACTAAGGAGAGAAGCAGAAGAAAAAGGCTGGAATTTGGAAGTCAATGTAGAGAGTGGTTCTATTTCCCTTCCAGTGGCATAAGGGGAGCATCCTAATCATGGTTTTCGCTGCTCAAAACTTAAGGATTGTCGATATCTATTTTTGCCGTTCTCATATGGCTACATGTAAGGTAAGTTTGGTTCTCTGCTTAAATGGGACAAATTTTTTTTTTTTTTCTTTGAATTTATTAAATGGGACAAAGTTGGTTGCTCTTTTTTGGCTTTTAAAATCAAATGTTTGTCTTTGGTCATTTTCGAAATTCATATTGAATTGATTGTATCGGTATCTTTAGTCAAGTAGTTTGAAAAACAGCTACTTCTGCTAACCACGTTACTGGTCAGTTGCTGATTTATATATGCTCTATCACGTTTAAAGTATGAAATTACGTTATAGCAAATTCTTGCATCTTAGTAACTTTTTAAAAATATTCGTATAAGGTGATTGAATCTGTTTTTTTATTTATTTAATTTTCTTTCTAAAATTTTA

Coding sequence (CDS)

ATGGCGACTAACAACGGCGACATCCTAATGCTCGAAGCTCCGCCGCTGCCATCGGAACCGGGATGGCGCGTTTCTGCAGATGCGGCGGTAATCGACGCCTTGCCCTACATCGACGACGACTATGCCGATCCAAGGGTCAAAGCTGAGGTCAACCGCTTAGTGGAGGAAGAGATGCGCCGCAGCTCCAAGAGACCCGCCGACTTTCTCAAAGACTTGCCTCCTGTTCCAAAGTTCAAATTCGATGATCATCCAATGCTTGCTAGAGAATATGAACGTGTTAGAGCTGGGAGGCCTCCAATGCCTCTCGACGTTGCAAGATATAAATTGGAGACTCCAGCTTCTAATAAAAAGAACGACGAAACTGCATGGAAGCAGACACTTCAGAAAGCTCAATGCTTACTAAGTCATCAAGTGCTAAGGCTGGAAAATTTGGATCTGATGTCAAAATATGGTGCTGATGTCTGGAAGCAACACAACAAACAGTTGGAAGCACTTTTATCAAGAATGCAAAGATTAGCTCAAGAACAGAATGAGAAGATTGAAAAAGTGAACCGCGAAAGGAAATTCCATCAACAAAACGCTGCATATGAGCTTCATGGTTTGTCCACACAATGGAAGGAGCTTTGCCAGAAAAATATGGAAATTCAAGTGGCATGCTCTCAAATAGAGGGTCAAATCCAGGAACTAAGGAGAGAAGCAGAAGAAAAAGGCTGGAATTTGGAAGTCAATGTAGAGAGTGGTTCTATTTCCCTTCCAGTGGCATAA

Protein sequence

MATNNGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSSKRPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETAWKQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEKVNRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWNLEVNVESGSISLPVA

Homology

[Close]

BLAST of Sed0021446 vs. NCBI nr
Match: XP_004137495.1 (pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus] >KGN64160.1 hypothetical protein Csa_014348 [Cucumis sativus])

HSP 1 Score: 465.3 bits (1196), Expect = 3.4e-127
Identity = 229/251 (91.24%), Postives = 241/251 (96.02%), Query Frame = 0


Query: 4   NNGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSSK 63
           NNGDILMLEAPP PS+P WRVSADA VIDALPYIDDDYADPRVKAEV+RLVEEEMRRSSK
Sbjct: 6   NNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65

Query: 64  RPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETAW 123
           RPADFLKDLPP+PKFKF+DHPMLAREYERVRAGRPP+PLDVARYKLETP  NKKNDETAW
Sbjct: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAW 125

Query: 124 KQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEKV 183
           KQTLQKAQCLL HQVLRLENLDLMSKYG D+WKQHNKQLEALLSRMQ+LAQEQNEKIEKV
Sbjct: 126 KQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKV 185

Query: 184 NRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWNLEVN 243
           NRERKFHQQNAAYELH LSTQWKELC+KNMEIQVAC Q+EGQIQELRREA EKGWNLEVN
Sbjct: 186 NRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWNLEVN 245

Query: 244 VESGSISLPVA 255
           VE+GS+SLPV+
Sbjct: 246 VENGSVSLPVS 256

[Close]

BLAST of Sed0021446 vs. NCBI nr
Match: XP_023001174.1 (pre-mRNA-splicing factor SPF27 homolog [Cucurbita maxima] >XP_023001176.1 pre-mRNA-splicing factor SPF27 homolog [Cucurbita maxima] >XP_023001177.1 pre-mRNA-splicing factor SPF27 homolog [Cucurbita maxima])

HSP 1 Score: 464.9 bits (1195), Expect = 4.4e-127
Identity = 228/251 (90.84%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 4   NNGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSSK 63
           N+GDILMLEAPPLPS+P WRVSADA VIDALPYIDDDYADPRVKAEV+RLVEEEMRRSSK
Sbjct: 6   NSGDILMLEAPPLPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65

Query: 64  RPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETAW 123
           RPADFLKDLPP+PKFKF+DHPMLAREYERVRAGRPPMPLDVARYKLETP  NKKNDETAW
Sbjct: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKNDETAW 125

Query: 124 KQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEKV 183
           KQTLQ+AQCLL HQVLRLENL+LMSKYG+D+WKQHNKQLEALLSRMQ+LAQEQNEKIEKV
Sbjct: 126 KQTLQRAQCLLQHQVLRLENLELMSKYGSDIWKQHNKQLEALLSRMQKLAQEQNEKIEKV 185

Query: 184 NRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWNLEVN 243
           NRERKFHQQNAAYELH LSTQWKELC+KNMEIQVACSQIEGQIQELR EA EKGWNLEVN
Sbjct: 186 NRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGWNLEVN 245

Query: 244 VESGSISLPVA 255
           VE+GS+S PV+
Sbjct: 246 VENGSVSFPVS 256

[Close]

BLAST of Sed0021446 vs. NCBI nr
Match: XP_038893573.1 (pre-mRNA-splicing factor SPF27 homolog [Benincasa hispida])

HSP 1 Score: 464.5 bits (1194), Expect = 5.7e-127
Identity = 230/256 (89.84%), Postives = 244/256 (95.31%), Query Frame = 0


Query: 1   MATN--NGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEM 60
           MATN  NGDILMLEAPP PS+P WRV+ADA V+DALPYIDDDYADPRVKAEV+RLVEEEM
Sbjct: 1   MATNNINGDILMLEAPPQPSQPAWRVAADAEVVDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKN 120
           RRSSKRPADFLKDLPPVPKFKF+DHPMLAREYERVRAGRPP+PLDVARYKLETP  NKKN
Sbjct: 61  RRSSKRPADFLKDLPPVPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNE 180
           DETAWKQTLQKAQCLL HQVLRLENLDLMSKYG D+WKQHNKQLEALLSRMQ+LAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGW 240
           KIEKVNRERKFHQQNAAYELH LSTQWKELC+KNMEIQVAC Q+EGQI+ELRREA EKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIEELRREATEKGW 240

Query: 241 NLEVNVESGSISLPVA 255
           NLEVNVE+GS+SLPV+
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]

BLAST of Sed0021446 vs. NCBI nr
Match: XP_008462680.1 (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo])

HSP 1 Score: 463.0 bits (1190), Expect = 1.7e-126
Identity = 228/251 (90.84%), Postives = 240/251 (95.62%), Query Frame = 0


Query: 4   NNGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSSK 63
           NNGDILMLEAPP PS+P WRVSADA VIDALPYIDDDYADPRVKAEV+RLVEEEMRRSSK
Sbjct: 6   NNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65

Query: 64  RPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETAW 123
           RPADFLKDLPP+PK KF+DHPMLAREYERVRAGRPP+PLDVARYKLETP  NKKNDETAW
Sbjct: 66  RPADFLKDLPPLPKLKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAW 125

Query: 124 KQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEKV 183
           KQTLQKAQCLL HQVLRLENLDLMSKYG D+WKQHNKQLEALLSRMQ+LAQEQNEKIEKV
Sbjct: 126 KQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKV 185

Query: 184 NRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWNLEVN 243
           NRERKFHQQNAAYELH LSTQWKELC+KNMEIQVAC Q+EGQIQELRREA EKGWNLEVN
Sbjct: 186 NRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWNLEVN 245

Query: 244 VESGSISLPVA 255
           VE+GS+SLPV+
Sbjct: 246 VENGSVSLPVS 256

[Close]

BLAST of Sed0021446 vs. NCBI nr
Match: KAG6584331.1 (Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019921.1 Pre-mRNA-splicing factor SPF27-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 461.8 bits (1187), Expect = 3.7e-126
Identity = 227/251 (90.44%), Postives = 240/251 (95.62%), Query Frame = 0


Query: 4   NNGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSSK 63
           N+GDILMLEAPP PS+P WRVSADA VIDALPYIDDDYADPRVKAEV+RLVEEEMRRSSK
Sbjct: 6   NSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65

Query: 64  RPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETAW 123
           RPADFLKDLPP+PKFKF+DHPMLAREYERVRAGRPPMPLDVARYKLETP  NKKNDETAW
Sbjct: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKNDETAW 125

Query: 124 KQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEKV 183
           KQTLQ+AQCLL HQVLRLENL+LMSKYG D+WKQHNKQLEALLSRMQ+LAQEQNEKIEKV
Sbjct: 126 KQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKV 185

Query: 184 NRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWNLEVN 243
           NRERKFHQQNAAYELH LSTQWKELC+KNMEIQVACSQIEGQIQELR EA EKGWNLEVN
Sbjct: 186 NRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGWNLEVN 245

Query: 244 VESGSISLPVA 255
           VE+GS+S PV+
Sbjct: 246 VENGSVSFPVS 256

[Close]

BLAST of Sed0021446 vs. ExPASy Swiss-Prot
Match: Q949S9 (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 PE=1 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 6.6e-86
Identity = 157/247 (63.56%), Postives = 201/247 (81.38%), Query Frame = 0


Query: 1   MATNNGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRR 60
           MATNNGD+LMLEA P  + P W  +A+A VIDALPYIDDDY +P +K+EV+RLVEEEMRR
Sbjct: 1   MATNNGDVLMLEATPEAARP-WASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRR 60

Query: 61  SSKRPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDV-ARYKLETPASNKKND 120
           SSK+PADFLKDLPP+PKF F + P+L +EYERVRAG+PP+ +D  +RYKLE P +NK+ND
Sbjct: 61  SSKKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRND 120

Query: 121 ETAWKQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEK 180
           + AWKQ LQK Q  L  +++ LENL+LMSK G ++W+Q+N +LE  L+RMQRLAQEQNE+
Sbjct: 121 DAAWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEE 180

Query: 181 IEKVNRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWN 240
           IEKVNRERK+HQQ  +YEL+ LS +W++LC KNMEIQ AC+ +E QI   ++EA E+GWN
Sbjct: 181 IEKVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWN 240

Query: 241 LEVNVES 247
           LE  +E+
Sbjct: 241 LEEKLEN 246

[Close]

BLAST of Sed0021446 vs. ExPASy Swiss-Prot
Match: Q6PBE2 (Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis OX=8364 GN=bcas2 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-28
Identity = 75/221 (33.94%), Postives = 120/221 (54.30%), Query Frame = 0


Query: 21  GWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSSKRPADFLKDLPPVPKFKF 80
           G  + A   V+DALPY D  Y    V+     LVEEE RR   RP        P P +  
Sbjct: 3   GTSLVAGDVVVDALPYFDQGYDAQGVREAAAALVEEETRR--YRPTKNYLSYLPTPDYSA 62

Query: 81  DDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETAWKQTLQKAQCLLSHQVLR 140
            +  ++  E+ER+ + +P   L + RY+L  P S ++ND TAW++ +  +   L HQ +R
Sbjct: 63  FETEIMRNEFERLSSRQPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVR 122

Query: 141 LENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEKVNRERKFHQQNAAYELHG 200
           +ENL+LMS++G + WK +N+ L  ++   Q+  Q+  +KI+ +N +RK  Q  A   L  
Sbjct: 123 IENLELMSQHGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQRKNSQLTAGARLRE 182

Query: 201 LSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWNLE 242
           + + W  L  KN EI+ A  Q+E ++ +L+  + E   N+E
Sbjct: 183 MESTWVSLVSKNYEIERAIVQMENEVYQLKERSGENKENIE 221

[Close]

BLAST of Sed0021446 vs. ExPASy Swiss-Prot
Match: O75934 (Pre-mRNA-splicing factor SPF27 OS=Homo sapiens OX=9606 GN=BCAS2 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-28
Identity = 73/215 (33.95%), Postives = 118/215 (54.88%), Query Frame = 0


Query: 21  GWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSSKRPADFLKDLPPVPKFKF 80
           G  + A   V+DALPY D  Y  P V+     LVEEE RR   RP          P +  
Sbjct: 3   GTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRR--YRPTKNYLSYLTAPDYSA 62

Query: 81  DDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETAWKQTLQKAQCLLSHQVLR 140
            +  ++  E+ER+ A +P   L + RY+L  P+S +KND TAW++ +  +   L HQ +R
Sbjct: 63  FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 122

Query: 141 LENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEKVNRERKFHQQNAAYELHG 200
           +ENL+LMS++G + WK +N+ L  ++   Q+  Q+  + I+ +N +RK  Q  A  +L  
Sbjct: 123 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 182

Query: 201 LSTQWKELCQKNMEIQVACSQIEGQIQELRREAEE 236
           + + W  L  KN EI+    Q+E +I +++++  E
Sbjct: 183 MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGE 215

[Close]

BLAST of Sed0021446 vs. ExPASy Swiss-Prot
Match: Q9D287 (Pre-mRNA-splicing factor SPF27 OS=Mus musculus OX=10090 GN=Bcas2 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-28
Identity = 73/215 (33.95%), Postives = 118/215 (54.88%), Query Frame = 0


Query: 21  GWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSSKRPADFLKDLPPVPKFKF 80
           G  + A   V+DALPY D  Y  P V+     LVEEE RR   RP          P +  
Sbjct: 3   GTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRR--YRPTKNYLSYLTAPDYSA 62

Query: 81  DDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETAWKQTLQKAQCLLSHQVLR 140
            +  ++  E+ER+ A +P   L + RY+L  P+S +KND TAW++ +  +   L HQ +R
Sbjct: 63  FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 122

Query: 141 LENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEKVNRERKFHQQNAAYELHG 200
           +ENL+LMS++G + WK +N+ L  ++   Q+  Q+  + I+ +N +RK  Q  A  +L  
Sbjct: 123 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 182

Query: 201 LSTQWKELCQKNMEIQVACSQIEGQIQELRREAEE 236
           + + W  L  KN EI+    Q+E +I +++++  E
Sbjct: 183 MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGE 215

[Close]

BLAST of Sed0021446 vs. ExPASy Swiss-Prot
Match: Q5RKQ0 (Pre-mRNA-splicing factor SPF27 OS=Danio rerio OX=7955 GN=bcas2 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-27
Identity = 70/202 (34.65%), Postives = 110/202 (54.46%), Query Frame = 0


Query: 31  IDALPYIDDDYADPRVKAEVNRLVEEEMRRSSKRPADFLKDLPPVPKFKFDDHPMLAREY 90
           +DALPY D  Y    V+     LVEEE RR   RP        P P F   +  ++  E+
Sbjct: 13  VDALPYFDQGYDATGVREAAAALVEEETRR--YRPTKNYLSYLPTPDFSAFETEIMRNEF 72

Query: 91  ERVRAGRPPMPLDVARYKLETPASNKKNDETAWKQTLQKAQCLLSHQVLRLENLDLMSKY 150
           ER+ A +P   L + RY+L  P+S +KND TAW+  +  +   L HQ +R+ENL+LM++Y
Sbjct: 73  ERLAARQPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENLELMAQY 132

Query: 151 GADVWKQHNKQLEALLSRMQRLAQEQNEKIEKVNRERKFHQQNAAYELHGLSTQWKELCQ 210
           G + WK  N  L  ++   Q+  Q   ++I+ +N +RK  Q     +L  L + W  L  
Sbjct: 133 GTNAWKMSNDNLALMIENSQKELQNVRKEIQDLNWQRKNDQLAGGAKLRELESNWVSLVS 192

Query: 211 KNMEIQVACSQIEGQIQELRRE 233
           KN EI+ A  Q+E ++ +++++
Sbjct: 193 KNYEIERAIVQLENEVAQMKQQ 212

[Close]

BLAST of Sed0021446 vs. ExPASy TrEMBL
Match: A0A0A0LQG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042680 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.6e-127
Identity = 229/251 (91.24%), Postives = 241/251 (96.02%), Query Frame = 0


Query: 4   NNGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSSK 63
           NNGDILMLEAPP PS+P WRVSADA VIDALPYIDDDYADPRVKAEV+RLVEEEMRRSSK
Sbjct: 6   NNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65

Query: 64  RPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETAW 123
           RPADFLKDLPP+PKFKF+DHPMLAREYERVRAGRPP+PLDVARYKLETP  NKKNDETAW
Sbjct: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAW 125

Query: 124 KQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEKV 183
           KQTLQKAQCLL HQVLRLENLDLMSKYG D+WKQHNKQLEALLSRMQ+LAQEQNEKIEKV
Sbjct: 126 KQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKV 185

Query: 184 NRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWNLEVN 243
           NRERKFHQQNAAYELH LSTQWKELC+KNMEIQVAC Q+EGQIQELRREA EKGWNLEVN
Sbjct: 186 NRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWNLEVN 245

Query: 244 VESGSISLPVA 255
           VE+GS+SLPV+
Sbjct: 246 VENGSVSLPVS 256

[Close]

BLAST of Sed0021446 vs. ExPASy TrEMBL
Match: A0A6J1KLZ4 (pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita maxima OX=3661 GN=LOC111495390 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.1e-127
Identity = 228/251 (90.84%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 4   NNGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSSK 63
           N+GDILMLEAPPLPS+P WRVSADA VIDALPYIDDDYADPRVKAEV+RLVEEEMRRSSK
Sbjct: 6   NSGDILMLEAPPLPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65

Query: 64  RPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETAW 123
           RPADFLKDLPP+PKFKF+DHPMLAREYERVRAGRPPMPLDVARYKLETP  NKKNDETAW
Sbjct: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKNDETAW 125

Query: 124 KQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEKV 183
           KQTLQ+AQCLL HQVLRLENL+LMSKYG+D+WKQHNKQLEALLSRMQ+LAQEQNEKIEKV
Sbjct: 126 KQTLQRAQCLLQHQVLRLENLELMSKYGSDIWKQHNKQLEALLSRMQKLAQEQNEKIEKV 185

Query: 184 NRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWNLEVN 243
           NRERKFHQQNAAYELH LSTQWKELC+KNMEIQVACSQIEGQIQELR EA EKGWNLEVN
Sbjct: 186 NRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGWNLEVN 245

Query: 244 VESGSISLPVA 255
           VE+GS+S PV+
Sbjct: 246 VENGSVSFPVS 256

[Close]

BLAST of Sed0021446 vs. ExPASy TrEMBL
Match: A0A1S3CHH7 (pre-mRNA-splicing factor SPF27 homolog OS=Cucumis melo OX=3656 GN=LOC103500959 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 8.1e-127
Identity = 228/251 (90.84%), Postives = 240/251 (95.62%), Query Frame = 0


Query: 4   NNGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSSK 63
           NNGDILMLEAPP PS+P WRVSADA VIDALPYIDDDYADPRVKAEV+RLVEEEMRRSSK
Sbjct: 6   NNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65

Query: 64  RPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETAW 123
           RPADFLKDLPP+PK KF+DHPMLAREYERVRAGRPP+PLDVARYKLETP  NKKNDETAW
Sbjct: 66  RPADFLKDLPPLPKLKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAW 125

Query: 124 KQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEKV 183
           KQTLQKAQCLL HQVLRLENLDLMSKYG D+WKQHNKQLEALLSRMQ+LAQEQNEKIEKV
Sbjct: 126 KQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKV 185

Query: 184 NRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWNLEVN 243
           NRERKFHQQNAAYELH LSTQWKELC+KNMEIQVAC Q+EGQIQELRREA EKGWNLEVN
Sbjct: 186 NRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWNLEVN 245

Query: 244 VESGSISLPVA 255
           VE+GS+SLPV+
Sbjct: 246 VENGSVSLPVS 256

[Close]

BLAST of Sed0021446 vs. ExPASy TrEMBL
Match: A0A6J1EDE4 (pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431514 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 8.9e-126
Identity = 226/251 (90.04%), Postives = 239/251 (95.22%), Query Frame = 0


Query: 4   NNGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSSK 63
           N+GDILMLEAPP PS+P WRVSADA VIDALPYIDDDYADPRVKAEV+RLVEEEMRRSSK
Sbjct: 6   NSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65

Query: 64  RPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETAW 123
           RPADFLKDLPP+PKFKF+DHPMLAREYERVRAGRPPMPLDVARYKLETP  NKKNDETAW
Sbjct: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKNDETAW 125

Query: 124 KQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEKV 183
           KQTLQ+AQCLL HQVLRLENL+LMSKY  D+WKQHNKQLEALLSRMQ+LAQEQNEKIEKV
Sbjct: 126 KQTLQRAQCLLQHQVLRLENLELMSKYAPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKV 185

Query: 184 NRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWNLEVN 243
           NRERKFHQQNAAYELH LSTQWKELC+KNMEIQVACSQIEGQIQELR EA EKGWNLEVN
Sbjct: 186 NRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGWNLEVN 245

Query: 244 VESGSISLPVA 255
           VE+GS+S PV+
Sbjct: 246 VENGSVSFPVS 256

[Close]

BLAST of Sed0021446 vs. ExPASy TrEMBL
Match: A0A6J1CB04 (pre-mRNA-splicing factor SPF27 homolog OS=Momordica charantia OX=3673 GN=LOC111009059 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 2.4e-123
Identity = 221/252 (87.70%), Postives = 237/252 (94.05%), Query Frame = 0


Query: 3   TNNGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRRSS 62
           +NNGDILMLEAPP PS+P W V+ADA VIDALPYIDDDYADPRVKAEV+RLVEEEMRRS 
Sbjct: 5   SNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSF 64

Query: 63  KRPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDVARYKLETPASNKKNDETA 122
           KRPADFLKDLPPVPK KF+DHP+LAREYERVRAGRPP+PLDVARYKLETP  NKKNDETA
Sbjct: 65  KRPADFLKDLPPVPKVKFEDHPLLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETA 124

Query: 123 WKQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEKIEK 182
           WKQTLQ+AQCLL HQVLRLENL+LMSKYG D+WKQHNKQLEALLSRMQ+LAQEQNEKIEK
Sbjct: 125 WKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEK 184

Query: 183 VNRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWNLEV 242
           VNRERKFHQQNAAYELH LSTQWK+LC KNMEIQVACSQIEGQIQELRREA E GWNLE 
Sbjct: 185 VNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGWNLEA 244

Query: 243 NVESGSISLPVA 255
           N+E+GS+SLPV+
Sbjct: 245 NIENGSVSLPVS 256

[Close]

BLAST of Sed0021446 vs. TAIR 10
Match: AT3G18165.1 (modifier of snc1,4 )

HSP 1 Score: 318.5 bits (815), Expect = 4.7e-87
Identity = 157/247 (63.56%), Postives = 201/247 (81.38%), Query Frame = 0


Query: 1   MATNNGDILMLEAPPLPSEPGWRVSADAAVIDALPYIDDDYADPRVKAEVNRLVEEEMRR 60
           MATNNGD+LMLEA P  + P W  +A+A VIDALPYIDDDY +P +K+EV+RLVEEEMRR
Sbjct: 1   MATNNGDVLMLEATPEAARP-WASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRR 60

Query: 61  SSKRPADFLKDLPPVPKFKFDDHPMLAREYERVRAGRPPMPLDV-ARYKLETPASNKKND 120
           SSK+PADFLKDLPP+PKF F + P+L +EYERVRAG+PP+ +D  +RYKLE P +NK+ND
Sbjct: 61  SSKKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRND 120

Query: 121 ETAWKQTLQKAQCLLSHQVLRLENLDLMSKYGADVWKQHNKQLEALLSRMQRLAQEQNEK 180
           + AWKQ LQK Q  L  +++ LENL+LMSK G ++W+Q+N +LE  L+RMQRLAQEQNE+
Sbjct: 121 DAAWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEE 180

Query: 181 IEKVNRERKFHQQNAAYELHGLSTQWKELCQKNMEIQVACSQIEGQIQELRREAEEKGWN 240
           IEKVNRERK+HQQ  +YEL+ LS +W++LC KNMEIQ AC+ +E QI   ++EA E+GWN
Sbjct: 181 IEKVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWN 240

Query: 241 LEVNVES 247
           LE  +E+
Sbjct: 241 LEEKLEN 246

The following BLAST results are available for this feature:

BLAST of Sed0021446 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137495.1	3.4e-127	91.24	pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus] >KGN64160.1 hypothetica...	[more]
XP_023001174.1	4.4e-127	90.84	pre-mRNA-splicing factor SPF27 homolog [Cucurbita maxima] >XP_023001176.1 pre-mR...	[more]
XP_038893573.1	5.7e-127	89.84	pre-mRNA-splicing factor SPF27 homolog [Benincasa hispida]	[more]
XP_008462680.1	1.7e-126	90.84	PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo]	[more]
KAG6584331.1	3.7e-126	90.44	Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Sed0021446 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q949S9	6.6e-86	63.56	Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 P...	[more]
Q6PBE2	2.2e-28	33.94	Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis OX=8364 GN=bcas2 PE=2 SV=1	[more]
O75934	4.8e-28	33.95	Pre-mRNA-splicing factor SPF27 OS=Homo sapiens OX=9606 GN=BCAS2 PE=1 SV=1	[more]
Q9D287	4.8e-28	33.95	Pre-mRNA-splicing factor SPF27 OS=Mus musculus OX=10090 GN=Bcas2 PE=1 SV=1	[more]
Q5RKQ0	1.8e-27	34.65	Pre-mRNA-splicing factor SPF27 OS=Danio rerio OX=7955 GN=bcas2 PE=2 SV=1	[more]

BLAST of Sed0021446 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQG2	1.6e-127	91.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042680 PE=4 SV=1	[more]
A0A6J1KLZ4	2.1e-127	90.84	pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114953...	[more]
A0A1S3CHH7	8.1e-127	90.84	pre-mRNA-splicing factor SPF27 homolog OS=Cucumis melo OX=3656 GN=LOC103500959 P...	[more]
A0A6J1EDE4	8.9e-126	90.04	pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1CB04	2.4e-123	87.70	pre-mRNA-splicing factor SPF27 homolog OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Sed0021446 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18165.1	4.7e-87	63.56	modifier of snc1,4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 212..232
None	No IPR available	COILS	Coil	Coil	coord: 155..193
None	No IPR available	PANTHER	PTHR13296:SF0	PRE-MRNA-SPLICING FACTOR SPF27	coord: 16..237
IPR008409	Pre-mRNA-splicing factor SPF27	PFAM	PF05700	BCAS2	coord: 30..235 e-value: 2.0E-73 score: 246.5
IPR008409	Pre-mRNA-splicing factor SPF27	PANTHER	PTHR13296	BCAS2 PROTEIN	coord: 16..237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021446.1	Sed0021446.1	mRNA
Sed0021446.2	Sed0021446.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0002758	innate immune response-activating signal transduction
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0000974	Prp19 complex