Sed0021323 (gene) Chayote v1

Overview


Name	Sed0021323
Type	gene
Organism	Sechium edule (Chayote v1)
Description	transcription factor PRE6-like
Location	LG04: 5588060 .. 5589614 (-)
RNA-Seq Expression	Sed0021323
Synteny	Sed0021323

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTACTTTTCCATTCTTTTGGGTTTGTTCTTCTTCTAATCTCTCTCTCTCTCTCAAACTCTCCAATATATATATATTCCTAGTGTTTTGCCTACCTAGCCTGCTTTTGTTTTTAAGAATCTGACACAAGTTTCATTCCTCATCTGCTTTGCTTTCAGTTTTCAAGCCAACGAACAAACCGCAATCATGTCTACCCGAAGCTCCCATTCTCGACGCTCGTCTGCTCCCTCGAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGTAATGCCCGTTCTTCCTCTAGGGTATCTTTCTTTTCCCGTTTTTTGTTTCAATTTCTACGTTTCTTACTTTTATGACGTTCTTCTCTAAATTAATCAACTCGCAATATGAAAGACTAACTCATATATCTTATAAATCTTGTGAAGTCACTATTCCTTAAGAAATTGCCTTCTTTTAAGTTTTTGTTATTATTGAGTTTTTGCACATTAAATACTTATTTAAGTTTAATGAATTTTGATACTATATTAGATTAATATAAATTCTGTCTCAAAATCTATTAAGGACACTCAATTGTCTACATATCTCCTCGTTGATAGATATGATAATGTCCACTTTAAAAACATGAGATTTCATAGGTTTGATGTTGTTTTTCACCCAAAAGGCATTATACAATGAATATTGTATTGCTAATTATTTTCTTCTCTTATCTAAAGAATGTGAGACTTTGGTCACACTCTTAATGACTATCCCATTGATCAAAGTACACTCAAACCTTTCGAGCCTCATCTTTATTCAACACTTTGAGGATTCTATCTACATTGCTAAATTAGGTGATGACTCTAATACCATTTATATATTCGCGATAAAAAAATTAATTCTCAATAAAAGAAAAACGCATGCATCTAATAAATGTTGTCAAGTCTCCCCATCTTTTGAGCATAGAATCCTCAACATCTCTTACTTCTCATACATGCACATTAATACATAACATTACATTCATTATTCCTGGCTCTTAATCTCATTTTGTATTAATAGAATGCAGAACAAAATGGTTTAGACCTAGAATCTCTCATTCATTGCACAATTGTTAATTTTCTCCATTGAAAAATTAAAAAGTACTTTTAATAAAAGCTTTGTGTGGAATGGGGGTCTTAGGTATCAGCTTCAAAAGTTTTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGACGACTTAAGCGACCGATTATCAGAGCTATTAGCATCAACGGACCCCGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTAATTATGTAATAATCATCGATTTTTCCAAGCCTCTCTCTCTCAAGCAAATCATTCTTCTTCTATAGAATTTGGCTTCATCAGCAACTCAAACCTTCACCTTGAATTAGCTACCATATAGATATATATATATTATAAAGTCGTATAAGAAAAGAGCTTGTCTAAGTTTCTTCTTCATTACTGTCATATATATATATATAAAACTTTAGTCGCTAATGGTGAGAAGAAGTTATGTGCAC

mRNA sequence

ATTTTACTTTTCCATTCTTTTGGTTTTCAAGCCAACGAACAAACCGCAATCATGTCTACCCGAAGCTCCCATTCTCGACGCTCGTCTGCTCCCTCGAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGTAATGCCCGTTCTTCCTCTAGGGTATCAGCTTCAAAAGTTTTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGACGACTTAAGCGACCGATTATCAGAGCTATTAGCATCAACGGACCCCGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTAATTATGTAATAATCATCGATTTTTCCAAGCCTCTCTCTCTCAAGCAAATCATTCTTCTTCTATAGAATTTGGCTTCATCAGCAACTCAAACCTTCACCTTGAATTAGCTACCATATAGATATATATATATTATAAAGTCGTATAAGAAAAGAGCTTGTCTAAGTTTCTTCTTCATTACTGTCATATATATATATATAAAACTTTAGTCGCTAATGGTGAGAAGAAGTTATGTGCAC

Coding sequence (CDS)

ATGTCTACCCGAAGCTCCCATTCTCGACGCTCGTCTGCTCCCTCGAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGTAATGCCCGTTCTTCCTCTAGGGTATCAGCTTCAAAAGTTTTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGACGACTTAAGCGACCGATTATCAGAGCTATTAGCATCAACGGACCCCGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTAATTATGTAA

Protein sequence

MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

Homology

[Close]

BLAST of Sed0021323 vs. NCBI nr
Match: XP_022151230.1 (transcription factor PRE6-like [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 8.6e-36
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS+RSS SRRS  PSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          SLQREVDDLS+RLSELLASTDPESAQAAIIRSL+M
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0021323 vs. NCBI nr
Match: XP_038893351.1 (transcription factor PRE6-like [Benincasa hispida])

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 89/95 (93.68%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS RSS SRRS  PSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSL+M
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0021323 vs. NCBI nr
Match: XP_022968308.1 (transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 155.6 bits (392), Expect = 2.1e-34
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS+RSS SRRSS PS NISD+QIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSL+M
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0021323 vs. NCBI nr
Match: XP_022945906.1 (transcription factor PRE6-like [Cucurbita moschata] >XP_023541313.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.2 bits (391), Expect = 2.8e-34
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS+RSS SRRSS PS NISD+QIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSL+M
Sbjct: 61 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0021323 vs. NCBI nr
Match: XP_004135185.1 (transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa_009290 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 4.7e-34
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS RSS SRRS   SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSL+M
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0021323 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-25
Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 2  STRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRS 61
          S RSS SR+S   S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+
Sbjct: 3  SRRSSRSRQSG--SSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYIRN 62

Query: 62 LQREVDDLSDRLSELLASTDPESAQAAIIRSLI 95
          L REVDDLSDRLSELLASTD  SA+AAIIRSL+
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Sed0021323 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-24
Identity = 62/90 (68.89%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 5  SSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQR 64
          SS   R ++ S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSDRLSELLASTDPESAQAAIIRSLI 95
          E DDLSDRL++LL S DP S QAA+IRSLI
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of Sed0021323 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-23
Identity = 64/94 (68.09%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS R S SR+SS  SR IS+DQI DLI KLQQL+PE+R++R S +VSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSSGTSR-ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLI 95
          +L REVDDLS+RLSELLA++D  +AQAA+IRSL+
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]

BLAST of Sed0021323 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-23
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS+R S SR+S   S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEAR-LRSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          SL +EVDDLS+RLSELLA++D  SAQAAIIRSL+M
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Sed0021323 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-23
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS+R S SR+S   S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEAR-LRSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          SL +EVDDLS+RLSELLA++D  SAQAAIIRSL+M
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Sed0021323 vs. ExPASy TrEMBL
Match: A0A6J1DAM4 (transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.2e-36
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS+RSS SRRS  PSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          SLQREVDDLS+RLSELLASTDPESAQAAIIRSL+M
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0021323 vs. ExPASy TrEMBL
Match: A0A6J1HXN1 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.0e-34
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS+RSS SRRSS PS NISD+QIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSL+M
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0021323 vs. ExPASy TrEMBL
Match: A0A6J1G268 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS+RSS SRRSS PS NISD+QIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSL+M
Sbjct: 61 SLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0021323 vs. ExPASy TrEMBL
Match: A0A0A0KQJ7 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G604940 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.3e-34
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS RSS SRRS   SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSL+M
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0021323 vs. ExPASy TrEMBL
Match: A0A1S3BFH5 (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103489101 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.1e-34
Identity = 86/95 (90.53%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS RSS SRRS   SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          SLQREVDDLSDRLS+LLASTDPESAQAAIIRSL+M
Sbjct: 61 SLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Sed0021323 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.0e-26
Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 2  STRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRS 61
          S RSS SR+S   S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+
Sbjct: 3  SRRSSRSRQSG--SSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYIRN 62

Query: 62 LQREVDDLSDRLSELLASTDPESAQAAIIRSLI 95
          L REVDDLSDRLSELLASTD  SA+AAIIRSL+
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Sed0021323 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 111.3 bits (277), Expect = 4.3e-25
Identity = 62/90 (68.89%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 5  SSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQR 64
          SS   R ++ S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSDRLSELLASTDPESAQAAIIRSLI 95
          E DDLSDRL++LL S DP S QAA+IRSLI
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of Sed0021323 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-24
Identity = 64/94 (68.09%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS R S SR+SS  SR IS+DQI DLI KLQQL+PE+R++R S +VSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSSGTSR-ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLI 95
          +L REVDDLS+RLSELLA++D  +AQAA+IRSL+
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

[Close]

BLAST of Sed0021323 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-23
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 1  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60
          MS R   SR++S  SR ISDDQ+ DL+SKL+Q +PEI   R S +VSASKVLQETCNYIR
Sbjct: 1  MSNR--RSRQTSNASR-ISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
           L REVD+LSDRLS+LL S D +S +AA+IRSL+M
Sbjct: 61 KLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Sed0021323 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 101.7 bits (252), Expect = 3.4e-22
Identity = 54/91 (59.34%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 5  SSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQR 64
          S+   R S+ +  ISD+Q+ DL+SKL+Q++PEI   R S + SASKVLQETCNYIR+L R
Sbjct: 2  SNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNR 61

Query: 65 EVDDLSDRLSELLASTDPESAQAAIIRSLIM 96
          EVD+LS+RLS+LL S D +S +AA+IRSL+M
Sbjct: 62 EVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

The following BLAST results are available for this feature:

BLAST of Sed0021323 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151230.1	8.6e-36	93.68	transcription factor PRE6-like [Momordica charantia]	[more]
XP_038893351.1	1.5e-35	93.68	transcription factor PRE6-like [Benincasa hispida]	[more]
XP_022968308.1	2.1e-34	91.58	transcription factor PRE6-like [Cucurbita maxima]	[more]
XP_022945906.1	2.8e-34	91.58	transcription factor PRE6-like [Cucurbita moschata] >XP_023541313.1 transcriptio...	[more]
XP_004135185.1	4.7e-34	91.58	transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa...	[more]

BLAST of Sed0021323 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	1.4e-25	75.27	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9LXG5	6.0e-24	68.89	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
Q9CA64	2.3e-23	68.09	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
B8APB5	3.9e-23	67.37	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	3.9e-23	67.37	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]

BLAST of Sed0021323 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAM4	4.2e-36	93.68	transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE...	[more]
A0A6J1HXN1	1.0e-34	91.58	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 ...	[more]
A0A6J1G268	1.3e-34	91.58	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=...	[more]
A0A0A0KQJ7	2.3e-34	91.58	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G604940 PE=4 SV=1	[more]
A0A1S3BFH5	5.1e-34	90.53	transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103489101 PE=4 SV=1	[more]

BLAST of Sed0021323 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	1.0e-26	75.27	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G15160.1	4.3e-25	68.89	BANQUO 2	[more]
AT1G74500.1	1.6e-24	68.09	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT3G28857.1	1.8e-23	65.26	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	3.4e-22	59.34	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..79
None	No IPR available	PANTHER	PTHR46446:SF11	TRANSCRIPTION FACTOR PRE6	coord: 1..95
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 21..63 e-value: 5.0E-7 score: 29.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 7..62 score: 10.048319
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 20..90 e-value: 2.9E-9 score: 39.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 21..82
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021323.1	Sed0021323.1	mRNA
Sed0021323.2	Sed0021323.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity