Sed0021304 (gene) Chayote v1

Overview
NameSed0021304
Typegene
OrganismSechium edule (Chayote v1)
DescriptionS-protein homolog
LocationLG01: 70717353 .. 70717526 (-)
RNA-Seq ExpressionSed0021304
SyntenySed0021304
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCAACAACCACAGCCATGTTTCTCTAGACGTGTTTTGGCCCGAGGCTTTGTCGAAGCAATGGCTTCGCTACAAATGTCGCGACAATGTCTGTTATCGGTCGACGAGAAAGGATGGAATCTTTATTTTTAATGTACCTGAAAATAAATTTGAGCTTCATGTTAAATGGTAG

mRNA sequence

ATGCGCAACAACCACAGCCATGTTTCTCTAGACGTGTTTTGGCCCGAGGCTTTGTCGAAGCAATGGCTTCGCTACAAATGTCGCGACAATGTCTGTTATCGGTCGACGAGAAAGGATGGAATCTTTATTTTTAATGTACCTGAAAATAAATTTGAGCTTCATGTTAAATGGTAG

Coding sequence (CDS)

ATGCGCAACAACCACAGCCATGTTTCTCTAGACGTGTTTTGGCCCGAGGCTTTGTCGAAGCAATGGCTTCGCTACAAATGTCGCGACAATGTCTGTTATCGGTCGACGAGAAAGGATGGAATCTTTATTTTTAATGTACCTGAAAATAAATTTGAGCTTCATGTTAAATGGTAG

Protein sequence

MRNNHSHVSLDVFWPEALSKQWLRYKCRDNVCYRSTRKDGIFIFNVPENKFELHVKW
Homology
BLAST of Sed0021304 vs. NCBI nr
Match: KAE8650840.1 (hypothetical protein Csa_017632 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 4.4e-19
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 0

Query: 1   MRNNHSHVSLDVFWPEALSKQWLRYKCRDNVCYRSTRKDGIFIFNVPENKFELHVKW 58
           M N+H+HVSL+VFWPEA SK +L Y+CRDNVCY S R DGI+I+NVPENKFELH KW
Sbjct: 89  MSNDHNHVSLEVFWPEAASKPYLSYRCRDNVCYWSARNDGIYIYNVPENKFELHTKW 145

BLAST of Sed0021304 vs. NCBI nr
Match: XP_009372346.1 (PREDICTED: uncharacterized protein LOC103961515 [Pyrus x bretschneideri])

HSP 1 Score: 64.7 bits (156), Expect = 3.0e-07
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 1   MRNNHSHVSLDVFWPEALSKQWLRYKCRDNVCYRSTRKDGIFIFNVPENKFELHVKW 58
           M N+H H S  VFWPE+ +  WLRY+C    C+   ++DGI++  +PE++ E  +KW
Sbjct: 99  MHNDHQHASFKVFWPES-NHSWLRYRCNYKECFWIAKEDGIYLRVIPESRDEFQLKW 154

BLAST of Sed0021304 vs. NCBI nr
Match: XP_007201112.2 (uncharacterized protein LOC18768730 [Prunus persica] >ONH93017.1 hypothetical protein PRUPE_8G208400 [Prunus persica])

HSP 1 Score: 60.1 bits (144), Expect = 7.3e-06
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 0

Query: 1   MRNNHSHVSLDVFWPEALSK-QWLRYKCRDNVCYRSTRKDGIFIFNVPENKFELHVKW 58
           + NNH H +  VFW E  SK  WL Y+C    C+   + DGI+I N PE + EL  +W
Sbjct: 101 IHNNHQHANFQVFWHEDESKSSWLHYRCNWKECFWVAKDDGIYIRNTPEGRDELQHQW 158

BLAST of Sed0021304 vs. NCBI nr
Match: XP_034229620.1 (S-protein homolog 1-like [Prunus dulcis] >VVA15896.1 PREDICTED: S- [Prunus dulcis])

HSP 1 Score: 60.1 bits (144), Expect = 7.3e-06
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 0

Query: 1   MRNNHSHVSLDVFWPEALSK-QWLRYKCRDNVCYRSTRKDGIFIFNVPENKFELHVKW 58
           + NNH H +  VFW E  SK  WL Y+C    C+   + DGI+I N PE + EL  +W
Sbjct: 101 IHNNHQHANFQVFWHEDESKSSWLHYRCNWKECFWVAKDDGIYIRNTPEGRDELQHQW 158

BLAST of Sed0021304 vs. NCBI nr
Match: CAB4291342.1 (unnamed protein product [Prunus armeniaca] >CAB4321660.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 1   MRNNHSHVSLDVFWPEALSK-QWLRYKCRDNVCYRSTRKDGIFIFNVPENKFELHVKW 58
           + NNH H +  VFW E  +K  WL Y+C    C+   + DGI+I N PE++ EL  +W
Sbjct: 101 IHNNHQHANFQVFWHEDETKSSWLHYRCNWKECFWVAKDDGIYIRNTPESRDELQHQW 158

BLAST of Sed0021304 vs. ExPASy TrEMBL
Match: A0A0A0L8P9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G623980 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 0

Query: 1  MRNNHSHVSLDVFWPEALSKQWLRYKCRDNVCYRSTRKDGIFIFNVPENKFELHVKW 58
          M N+H+HVSL+VFWPEA SK +L Y+CRDNVCY S R DGI+I+NVPENKFELH KW
Sbjct: 1  MSNDHNHVSLEVFWPEAASKPYLSYRCRDNVCYWSARNDGIYIYNVPENKFELHTKW 57

BLAST of Sed0021304 vs. ExPASy TrEMBL
Match: A0A5E4EKH7 (S-protein homolog OS=Prunus dulcis OX=3755 GN=ALMOND_2B010815 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 0

Query: 1   MRNNHSHVSLDVFWPEALSK-QWLRYKCRDNVCYRSTRKDGIFIFNVPENKFELHVKW 58
           + NNH H +  VFW E  SK  WL Y+C    C+   + DGI+I N PE + EL  +W
Sbjct: 101 IHNNHQHANFQVFWHEDESKSSWLHYRCNWKECFWVAKDDGIYIRNTPEGRDELQHQW 158

BLAST of Sed0021304 vs. ExPASy TrEMBL
Match: M5VN50 (S-protein homolog OS=Prunus persica OX=3760 GN=PRUPE_ppa024219mg PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 0

Query: 1   MRNNHSHVSLDVFWPEALSK-QWLRYKCRDNVCYRSTRKDGIFIFNVPENKFELHVKW 58
           + NNH H +  VFW E  SK  WL Y+C    C+   + DGI+I N PE + EL  +W
Sbjct: 47  IHNNHQHANFQVFWHEDESKSSWLHYRCNWKECFWVAKDDGIYIRNTPEGRDELQHQW 104

BLAST of Sed0021304 vs. ExPASy TrEMBL
Match: A0A251N105 (S-protein homolog OS=Prunus persica OX=3760 GN=PRUPE_8G208400 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 0

Query: 1   MRNNHSHVSLDVFWPEALSK-QWLRYKCRDNVCYRSTRKDGIFIFNVPENKFELHVKW 58
           + NNH H +  VFW E  SK  WL Y+C    C+   + DGI+I N PE + EL  +W
Sbjct: 101 IHNNHQHANFQVFWHEDESKSSWLHYRCNWKECFWVAKDDGIYIRNTPEGRDELQHQW 158

BLAST of Sed0021304 vs. ExPASy TrEMBL
Match: A0A6J5VTZ1 (S-protein homolog OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51617 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-06
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 1   MRNNHSHVSLDVFWPEALSK-QWLRYKCRDNVCYRSTRKDGIFIFNVPENKFELHVKW 58
           + NNH H +  VFW E  +K  WL Y+C    C+   + DGI+I N PE++ EL  +W
Sbjct: 101 IHNNHQHANFQVFWHEDETKSSWLHYRCNWKECFWVAKDDGIYIRNTPESRDELQHQW 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650840.14.4e-1973.68hypothetical protein Csa_017632 [Cucumis sativus][more]
XP_009372346.13.0e-0742.11PREDICTED: uncharacterized protein LOC103961515 [Pyrus x bretschneideri][more]
XP_007201112.27.3e-0643.10uncharacterized protein LOC18768730 [Prunus persica] >ONH93017.1 hypothetical pr... [more]
XP_034229620.17.3e-0643.10S-protein homolog 1-like [Prunus dulcis] >VVA15896.1 PREDICTED: S- [Prunus dulci... [more]
CAB4291342.11.2e-0541.38unnamed protein product [Prunus armeniaca] >CAB4321660.1 unnamed protein product... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8P92.1e-1973.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G623980 PE=3 SV=1[more]
A0A5E4EKH73.5e-0643.10S-protein homolog OS=Prunus dulcis OX=3755 GN=ALMOND_2B010815 PE=3 SV=1[more]
M5VN503.5e-0643.10S-protein homolog OS=Prunus persica OX=3760 GN=PRUPE_ppa024219mg PE=3 SV=1[more]
A0A251N1053.5e-0643.10S-protein homolog OS=Prunus persica OX=3760 GN=PRUPE_8G208400 PE=3 SV=1[more]
A0A6J5VTZ16.0e-0641.38S-protein homolog OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51617 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0021304.1Sed0021304.1mRNA