Sed0021298 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTCAAATTCATTTATCCTTTTATCCCTACTTTTAAGCTTCTTCCATGGCGACCAATCTTCCCGTTTTCCATCCCGCTCCGATCAGAGCTTCTTCCACCGGAAAATCCGAACCTAATCGCCGGATTTCCGCCGCGCCGAAGTGGTGGTCACCGATCTTCGGCTGGTCCTCCGAGCCGGACTACGTCGGTTCCTCCGCCGCGGATCTGCCGGTTCAGAATGCCGATCCGGAAATCGACGGCGGAGGAGCAAGATCCAGATTCACGCCTGGATGCTTCACGGAGGAGAAGGCGAAAATGCTCCGGATGAAGACGTCGGAGAGCTCTACGTTTCACGACATTATGTACCACTCGGCGATCGCGTCGCGTCTCGCCTCCGATTTGTCGGATCGGAGCAACAAGAAATAGATCGGCGATCGAAGCTTGGCGCAGTGAGGTATTGTATTGTGTTTTTGGAAATCTGTATCTGCACCGCCTCTCTTTGTAAACCGTCGGAACCTAAAATTTGGGGGAAATGATGTTGGATCTTCATTTTCTGACTAATTTACTGCTTAGTTTTGGCTTTTAGATGGTGTAGATTGCTGAAACTCTAAACCTTCTGAAATTTTCTTGCGTCTGATTTGTGATTGACGACGATTGTTTTGGAATTGTTGTTTGATTATAAACACAGTCTATTTGGATCATAGAGACAGTTGCAGATGAATCATTTCTTTTGATGTTTACGGCCTTGAAATCTTCGCCGACTTTTTTTTTGAACAATGAAAATGATTATTAAATGTGATGCTCTTGCCCTAACGATTTCTACTCAGAGTCGAGAATGATTTAGATCTGCGCCGTTTTAATTCTGTTCTTCATTGGAGTTTTCTTTTTGAAATAATTCCTAATTGATCTATTTATAGAAGGGGAATTATATGAATTTTGCAATTTTGTTCTTGTACTGTAAAATGATCAATTAACGAAGAAGAGATTATTACATTTGGCTGCTCTTTTGAGAATTTAAATCATTACTTTATATATATATATCAAATAAAAATGCTACAGAATCTGATGCCTTTGAGGTGTTCATTTGCAAGAATTTA GTCAAATTCATTTATCCTTTTATCCCTACTTTTAAGCTTCTTCCATGGCGACCAATCTTCCCGTTTTCCATCCCGCTCCGATCAGAGCTTCTTCCACCGGAAAATCCGAACCTAATCGCCGGATTTCCGCCGCGCCGAAGTGGTGGTCACCGATCTTCGGCTGGTCCTCCGAGCCGGACTACGTCGGTTCCTCCGCCGCGGATCTGCCGGTTCAGAATGCCGATCCGGAAATCGACGGCGGAGGAGCAAGATCCAGATTCACGCCTGGATGCTTCACGGAGGAGAAGGCGAAAATGCTCCGGATGAAGACGTCGGAGAGCTCTACGTTTCACGACATTATGTACCACTCGGCGATCGCGTCGCGTCTCGCCTCCGATTTGTCGGATCGGAGCAACAAGAAATAGATCGGCGATCGAAGCTTGGCGCAGTGAGGTATTGTATTGTGTTTTTGGAAATCTGTATCTGCACCGCCTCTCTTTGTAAACCGTCGGAACCTAAAATTTGGGGGAAATGATGTTGGATCTTCATTTTCTGACTAATTTACTGCTTAGTTTTGGCTTTTAGATGGTGTAGATTGCTGAAACTCTAAACCTTCTGAAATTTTCTTGCGTCTGATTTGTGATTGACGACGATTGTTTTGGAATTGTTGTTTGATTATAAACACAGTCTATTTGGATCATAGAGACAGTTGCAGATGAATCATTTCTTTTGATGTTTACGGCCTTGAAATCTTCGCCGACTTTTTTTTTGAACAATGAAAATGATTATTAAATGTGATGCTCTTGCCCTAACGATTTCTACTCAGAGTCGAGAATGATTTAGATCTGCGCCGTTTTAATTCTGTTCTTCATTGGAGTTTTCTTTTTGAAATAATTCCTAATTGATCTATTTATAGAAGGGGAATTATATGAATTTTGCAATTTTGTTCTTGTACTGTAAAATGATCAATTAACGAAGAAGAGATTATTACATTTGGCTGCTCTTTTGAGAATTTAAATCATTACTTTATATATATATATCAAATAAAAATGCTACAGAATCTGATGCCTTTGAGGTGTTCATTTGCAAGAATTTA ATGGCGACCAATCTTCCCGTTTTCCATCCCGCTCCGATCAGAGCTTCTTCCACCGGAAAATCCGAACCTAATCGCCGGATTTCCGCCGCGCCGAAGTGGTGGTCACCGATCTTCGGCTGGTCCTCCGAGCCGGACTACGTCGGTTCCTCCGCCGCGGATCTGCCGGTTCAGAATGCCGATCCGGAAATCGACGGCGGAGGAGCAAGATCCAGATTCACGCCTGGATGCTTCACGGAGGAGAAGGCGAAAATGCTCCGGATGAAGACGTCGGAGAGCTCTACGTTTCACGACATTATGTACCACTCGGCGATCGCGTCGCGTCTCGCCTCCGATTTGTCGGATCGGAGCAACAAGAAATAG MATNLPVFHPAPIRASSTGKSEPNRRISAAPKWWSPIFGWSSEPDYVGSSAADLPVQNADPEIDGGGARSRFTPGCFTEEKAKMLRMKTSESSTFHDIMYHSAIASRLASDLSDRSNKK Homology
BLAST of Sed0021298 vs. NCBI nr
Match: XP_023004861.1 (uncharacterized protein LOC111498038 [Cucurbita maxima]) HSP 1 Score: 214.5 bits (545), Expect = 4.8e-52 Identity = 103/118 (87.29%), Postives = 111/118 (94.07%), Query Frame = 0
BLAST of Sed0021298 vs. NCBI nr
Match: XP_022960101.1 (uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothetical protein SDJN03_12890, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025762.1 hypothetical protein SDJN02_12260, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 213.0 bits (541), Expect = 1.4e-51 Identity = 102/118 (86.44%), Postives = 110/118 (93.22%), Query Frame = 0
BLAST of Sed0021298 vs. NCBI nr
Match: XP_023514525.1 (uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 208.8 bits (530), Expect = 2.6e-50 Identity = 101/118 (85.59%), Postives = 109/118 (92.37%), Query Frame = 0
BLAST of Sed0021298 vs. NCBI nr
Match: XP_038898524.1 (uncharacterized protein LOC120086132 [Benincasa hispida]) HSP 1 Score: 202.2 bits (513), Expect = 2.5e-48 Identity = 99/118 (83.90%), Postives = 106/118 (89.83%), Query Frame = 0
BLAST of Sed0021298 vs. NCBI nr
Match: XP_008461069.1 (PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo] >KAA0058783.1 uncharacterized protein E6C27_scaffold339G002570 [Cucumis melo var. makuwa] >TYK10577.1 uncharacterized protein E5676_scaffold459G002310 [Cucumis melo var. makuwa]) HSP 1 Score: 192.2 bits (487), Expect = 2.6e-45 Identity = 98/122 (80.33%), Postives = 105/122 (86.07%), Query Frame = 0
BLAST of Sed0021298 vs. ExPASy TrEMBL
Match: A0A6J1KTB2 (uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038 PE=4 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 2.3e-52 Identity = 103/118 (87.29%), Postives = 111/118 (94.07%), Query Frame = 0
BLAST of Sed0021298 vs. ExPASy TrEMBL
Match: A0A6J1H6P9 (uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC111460952 PE=4 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 6.8e-52 Identity = 102/118 (86.44%), Postives = 110/118 (93.22%), Query Frame = 0
BLAST of Sed0021298 vs. ExPASy TrEMBL
Match: A0A5D3CF29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002310 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45 Identity = 98/122 (80.33%), Postives = 105/122 (86.07%), Query Frame = 0
BLAST of Sed0021298 vs. ExPASy TrEMBL
Match: A0A1S3CEC0 (uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45 Identity = 98/122 (80.33%), Postives = 105/122 (86.07%), Query Frame = 0
BLAST of Sed0021298 vs. ExPASy TrEMBL
Match: A0A0A0K8X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433380 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 6.8e-44 Identity = 96/126 (76.19%), Postives = 104/126 (82.54%), Query Frame = 0
BLAST of Sed0021298 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 104.8 bits (260), Expect = 5.0e-23 Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 0
BLAST of Sed0021298 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 94.7 bits (234), Expect = 5.2e-20 Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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