Sed0021279 (gene) Chayote v1

Overview


Name	Sed0021279
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-H2 finger protein ATL18-like
Location	LG01: 4426897 .. 4427681 (-)
RNA-Seq Expression	Sed0021279
Synteny	Sed0021279

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAGAGCAATCAATGAATTAGTACTTATTCTTCTTCTTCAACTTTTCCCAAACCAAAACTGAGCTCCAATAATTTAATGGCGAAATCAACGATTTAATCCTCTTTGAAATCGCTCGATCTTAACCAATCATTCAATCACAGCACCACCGCCATGTTAGGTTTCGTTTCTCTCGATCCGCGGATGCGATTCGCTCTCTTTCTCCTTCACGCTTCCCTCTGGATCCCGCTCCTTCGTCTTAAGGACGCCATTCTCGCCATCGCTACTGTTTTCCGCCTCCAATCTCTACCGGAAATGGACACCTCCGGCGGCGGCGGCGGAGATCTGCCGGTCAGGAAATACGGAGAGTTACGGAGGAGCGATGATCGATCCACGGAGGAGGAGATGTGTTCGATCTGTTTGACGGAATTCGCGAGAGGAGATTCCGTGTGCGAATTGACGAATTGTTGTCACGTTTTTCACTCCGATTGCATCGAGAAGTGGTTGGAGAAGAATCGATTTACTTGTCCGCTCTGTAGGTGTTTCTTCAACATCGAGAATCCTCGCCATGAGAAGAAGCTCTTTCGATTCCTTGTTCCTGATGATAATCCTTCTTGCCTCTACTATTTCTTGCAGTGATTTTCGATTTCGATTTCGATTTCGTTTTGATTCTCTTTTCGATCGCTTTGGAAATTGGAAGCTGTTCTTGGATTTTTCCATGTATATTGTGCACAAATCTTTCTTCTCTGAATTTTCTGTAAATACAGCCATTTTCTTTTATGAGGAAATTGAAATTGTTTCCTGCGA

mRNA sequence

AGCAGAGCAATCAATGAATTAGTACTTATTCTTCTTCTTCAACTTTTCCCAAACCAAAACTGAGCTCCAATAATTTAATGGCGAAATCAACGATTTAATCCTCTTTGAAATCGCTCGATCTTAACCAATCATTCAATCACAGCACCACCGCCATGTTAGGTTTCGTTTCTCTCGATCCGCGGATGCGATTCGCTCTCTTTCTCCTTCACGCTTCCCTCTGGATCCCGCTCCTTCGTCTTAAGGACGCCATTCTCGCCATCGCTACTGTTTTCCGCCTCCAATCTCTACCGGAAATGGACACCTCCGGCGGCGGCGGCGGAGATCTGCCGGTCAGGAAATACGGAGAGTTACGGAGGAGCGATGATCGATCCACGGAGGAGGAGATGTGTTCGATCTGTTTGACGGAATTCGCGAGAGGAGATTCCGTGTGCGAATTGACGAATTGTTGTCACGTTTTTCACTCCGATTGCATCGAGAAGTGGTTGGAGAAGAATCGATTTACTTGTCCGCTCTGTAGGTGTTTCTTCAACATCGAGAATCCTCGCCATGAGAAGAAGCTCTTTCGATTCCTTGTTCCTGATGATAATCCTTCTTGCCTCTACTATTTCTTGCAGTGATTTTCGATTTCGATTTCGATTTCGTTTTGATTCTCTTTTCGATCGCTTTGGAAATTGGAAGCTGTTCTTGGATTTTTCCATGTATATTGTGCACAAATCTTTCTTCTCTGAATTTTCTGTAAATACAGCCATTTTCTTTTATGAGGAAATTGAAATTGTTTCCTGCGA

Coding sequence (CDS)

ATGTTAGGTTTCGTTTCTCTCGATCCGCGGATGCGATTCGCTCTCTTTCTCCTTCACGCTTCCCTCTGGATCCCGCTCCTTCGTCTTAAGGACGCCATTCTCGCCATCGCTACTGTTTTCCGCCTCCAATCTCTACCGGAAATGGACACCTCCGGCGGCGGCGGCGGAGATCTGCCGGTCAGGAAATACGGAGAGTTACGGAGGAGCGATGATCGATCCACGGAGGAGGAGATGTGTTCGATCTGTTTGACGGAATTCGCGAGAGGAGATTCCGTGTGCGAATTGACGAATTGTTGTCACGTTTTTCACTCCGATTGCATCGAGAAGTGGTTGGAGAAGAATCGATTTACTTGTCCGCTCTGTAGGTGTTTCTTCAACATCGAGAATCCTCGCCATGAGAAGAAGCTCTTTCGATTCCTTGTTCCTGATGATAATCCTTCTTGCCTCTACTATTTCTTGCAGTGA

Protein sequence

MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ

Homology

[Close]

BLAST of Sed0021279 vs. NCBI nr
Match: KAG7010790.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.4 bits (529), Expect = 4.5e-50
Identity = 106/154 (68.83%), Postives = 123/154 (79.87%), Query Frame = 0


Query: 1   MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPV 60
           MLG + L+ R+  A+   +  +WIPL R+K+AIL IA+VFRL SLPEMD+S   GG L V
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSS--RGGTLLV 60

Query: 61  RKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPL 120
           R+Y EL+RSDDR+ EEEMCSICLTEFAR DSVC+L +C HVFH DCIEKW E+NRFTCPL
Sbjct: 61  RRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120

Query: 121 CRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ 155
           CRCFFNIE   HEKKL RF+VP DNPS LYYFLQ
Sbjct: 121 CRCFFNIEK-HHEKKL-RFVVP-DNPSSLYYFLQ 149

[Close]

BLAST of Sed0021279 vs. NCBI nr
Match: XP_022944066.1 (RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207.6 bits (527), Expect = 7.6e-50
Identity = 105/154 (68.18%), Postives = 123/154 (79.87%), Query Frame = 0


Query: 1   MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPV 60
           MLG + L+ R+  A+   +  +WIPL R+K+AIL +A+VFRL SLPEMD+S   GG L V
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGVASVFRLVSLPEMDSS--RGGTLLV 60

Query: 61  RKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPL 120
           R+Y EL+RSDDR+ EEEMCSICLTEFAR DSVC+L +C HVFH DCIEKW E+NRFTCPL
Sbjct: 61  RRYEELQRSDDRAEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120

Query: 121 CRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ 155
           CRCFFNIE   HEKKL RF+VP DNPS LYYFLQ
Sbjct: 121 CRCFFNIEK-HHEKKL-RFVVP-DNPSSLYYFLQ 149

[Close]

BLAST of Sed0021279 vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-49
Identity = 104/154 (67.53%), Postives = 123/154 (79.87%), Query Frame = 0


Query: 1   MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPV 60
           MLG + L+ R+  A+   +  +WIPL R+K+AIL +A+VFRL SLPEMD+S   GG L V
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGVASVFRLASLPEMDSS--RGGTLLV 60

Query: 61  RKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPL 120
           R+Y EL+RSDDR+ EEEMCSICLTEFAR DSVC+L +C HVFH DCIEKW E+NRFTCPL
Sbjct: 61  RRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120

Query: 121 CRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ 155
           CRCFFNIE   HE+KL RF+VP DNPS LYYFLQ
Sbjct: 121 CRCFFNIEK-HHERKL-RFVVP-DNPSSLYYFLQ 149

[Close]

BLAST of Sed0021279 vs. NCBI nr
Match: XP_022947864.1 (E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata])

HSP 1 Score: 188.0 bits (476), Expect = 6.3e-44
Identity = 103/159 (64.78%), Postives = 119/159 (74.84%), Query Frame = 0


Query: 2   LGFVSLDPRMR----FALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGD 61
           L F+ L  R R     A+   +  +WIPLLRLKDAI+   +VFRL  +PE D  G  GG 
Sbjct: 77  LRFLGLQLRNRRCFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESD--GSSGGT 136

Query: 62  LPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFT 121
           L VR+Y EL+RSDDR+ EEE+CSICL EFARGDSVC L +C HVFH DCIEKWLE+NRFT
Sbjct: 137 LLVRRYEELQRSDDRA-EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFT 196

Query: 122 CPLCRC--FFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ 155
           CPLCRC  FFNI N RHE+KL +F+VP DNPSCLYYFLQ
Sbjct: 197 CPLCRCFFFFNIRN-RHERKL-QFVVP-DNPSCLYYFLQ 229

[Close]

BLAST of Sed0021279 vs. NCBI nr
Match: KAG6604984.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035019.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.6 bits (475), Expect = 8.2e-44
Identity = 102/156 (65.38%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 1   MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPV 60
           MLGF+        A+   +  +WIPLLRLKDAI+   +VFRL  +PE D  G  GG L V
Sbjct: 1   MLGFL-------LAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESD--GSSGGTLLV 60

Query: 61  RKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPL 120
           R+Y EL+RSDDR+ EEE+CSICL EFARGDSVC L +C HVFH DCIEKWLE+NRFTCPL
Sbjct: 61  RRYEELQRSDDRA-EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPL 120

Query: 121 CRC--FFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ 155
           CRC  FFNI N RHE+KL +F+VP DNPSCLYYFLQ
Sbjct: 121 CRCFFFFNIRN-RHERKL-QFVVP-DNPSCLYYFLQ 143

[Close]

BLAST of Sed0021279 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 71  DRSTEEEM-CSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFFNIEN 130
           D+  EEE+ C ICL EF   D+V  L  C H+FH +CIE WL +   TCPLCR F     
Sbjct: 53  DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVLAPT 112

[Close]

BLAST of Sed0021279 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.7e-10
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 58  LPVRKYGE---LRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKN 117
           +PV K+ +   +   +D+S   + CS+CL EF   + +  + NCCHVFH DCI+ WL+ N
Sbjct: 110 IPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGN 169

Query: 118 RFTCPLCRCFFNIE 129
              CPLCR   + E
Sbjct: 170 A-NCPLCRTSVSCE 182

[Close]

BLAST of Sed0021279 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 58  LPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFT 117
           LPV K+ EL  S +   E   C++CL EF     +  L NC H+FH  C+++W++ ++ T
Sbjct: 75  LPVIKFEELTNSGEDLPEN--CAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHDQKT 134

Query: 118 CPLCRCFF 126
           CPLCR  F
Sbjct: 135 CPLCRTPF 140

[Close]

BLAST of Sed0021279 vs. ExPASy Swiss-Prot
Match: Q8H7N9 (E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.2e-09
Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 59  PVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTC 118
           P   YG+++      +    C++CL EFA  D +  L  CCHVFH DCI+ WL     TC
Sbjct: 113 PTAVYGDVKARMAAKSGPLECAVCLAEFADSDELRVLPACCHVFHPDCIDPWLAA-AVTC 172

Query: 119 PLCR 123
           PLCR
Sbjct: 173 PLCR 175

[Close]

BLAST of Sed0021279 vs. ExPASy Swiss-Prot
Match: Q9LY41 (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 58  LPVRKYGEL-RRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRF 117
           LP+ K+  + RRS   ++ +  C++CL++F   D +  L  CCH FH+DCI+ WL  N+ 
Sbjct: 97  LPIFKFSSVTRRSSSMNSGD--CAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQ- 156

Query: 118 TCPLCR 123
           TCPLCR
Sbjct: 157 TCPLCR 159

[Close]

BLAST of Sed0021279 vs. ExPASy TrEMBL
Match: A0A6J1FTE6 (RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.7e-50
Identity = 105/154 (68.18%), Postives = 123/154 (79.87%), Query Frame = 0


Query: 1   MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPV 60
           MLG + L+ R+  A+   +  +WIPL R+K+AIL +A+VFRL SLPEMD+S   GG L V
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGVASVFRLVSLPEMDSS--RGGTLLV 60

Query: 61  RKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPL 120
           R+Y EL+RSDDR+ EEEMCSICLTEFAR DSVC+L +C HVFH DCIEKW E+NRFTCPL
Sbjct: 61  RRYEELQRSDDRAEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120

Query: 121 CRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ 155
           CRCFFNIE   HEKKL RF+VP DNPS LYYFLQ
Sbjct: 121 CRCFFNIEK-HHEKKL-RFVVP-DNPSSLYYFLQ 149

[Close]

BLAST of Sed0021279 vs. ExPASy TrEMBL
Match: A0A6J1G855 (E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC111451622 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.0e-44
Identity = 103/159 (64.78%), Postives = 119/159 (74.84%), Query Frame = 0


Query: 2   LGFVSLDPRMR----FALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGD 61
           L F+ L  R R     A+   +  +WIPLLRLKDAI+   +VFRL  +PE D  G  GG 
Sbjct: 77  LRFLGLQLRNRRCFLLAISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESD--GSSGGT 136

Query: 62  LPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFT 121
           L VR+Y EL+RSDDR+ EEE+CSICL EFARGDSVC L +C HVFH DCIEKWLE+NRFT
Sbjct: 137 LLVRRYEELQRSDDRA-EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFT 196

Query: 122 CPLCRC--FFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ 155
           CPLCRC  FFNI N RHE+KL +F+VP DNPSCLYYFLQ
Sbjct: 197 CPLCRCFFFFNIRN-RHERKL-QFVVP-DNPSCLYYFLQ 229

[Close]

BLAST of Sed0021279 vs. ExPASy TrEMBL
Match: A0A6J1I5X8 (RING-H2 finger protein ATL18 OS=Cucurbita maxima OX=3661 GN=LOC111469894 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.4e-41
Identity = 94/135 (69.63%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 22  LWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSI 81
           +WIPLLRLKDAI+   +VFRL  +PE D  G  GG L VR+Y EL+R  DR+ EEE+CSI
Sbjct: 12  VWIPLLRLKDAIIGGVSVFRLAFVPESD--GSSGGTLLVRRYEELQRRYDRA-EEEICSI 71

Query: 82  CLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRC--FFNIENPRHEKKLFRF 141
           CL EFARGDSVC L +C HVFH  CIEKWLE+NRFTCPLCRC  FFNI N RHE+KL +F
Sbjct: 72  CLMEFARGDSVCVLLDCSHVFHFSCIEKWLERNRFTCPLCRCFFFFNIGN-RHERKL-QF 131

Query: 142 LVPDDNPSCLYYFLQ 155
           +VP DNPSCLYYFLQ
Sbjct: 132 VVP-DNPSCLYYFLQ 140

[Close]

BLAST of Sed0021279 vs. ExPASy TrEMBL
Match: A0A6J1CHK3 (RING-H2 finger protein ATL64 OS=Momordica charantia OX=3673 GN=LOC111011236 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.6e-35
Identity = 86/145 (59.31%), Postives = 101/145 (69.66%), Query Frame = 0


Query: 11  MRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSD 70
           MR  L  ++  + IPL  LK AIL++ATVFR  S P              R+Y ELRR +
Sbjct: 1   MRLPLIFVYDLVCIPLFHLKQAILSLATVFRFSSPPG-------------RRYEELRRRN 60

Query: 71  DRSTEEE-MCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFFNIEN 130
           D + E+E MCSICLTEFAR DSV EL +C HVFH +CIEKW+E+N FTCPLCRCFFNIEN
Sbjct: 61  DGTAEDEVMCSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCRCFFNIEN 120

Query: 131 PRHEKKLFRFLVPDDNPSCLYYFLQ 155
            R EK   RF++P DNPSCLYYFLQ
Sbjct: 121 -RPEK--LRFVIP-DNPSCLYYFLQ 128

[Close]

BLAST of Sed0021279 vs. ExPASy TrEMBL
Match: A0A5A7TXY0 (RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00410 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.5e-32
Identity = 83/156 (53.21%), Postives = 102/156 (65.38%), Query Frame = 0


Query: 1   MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAIL-AIATVFRLQSLPEMDTSGGGGGDLP 60
           MLG   L   MRF +      LWIPL R+K AIL  +ATVF L S P+  T       + 
Sbjct: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTD-----LVV 60

Query: 61  VRKYGELRRSDDRSTEEEMCSICLTEFARG-DSVCELTNCCHVFHSDCIEKWLEKNRFTC 120
           VR Y E    D   + EE+CSICLTEF R  DSVC+L NC H+FH +CI++W+++NRFTC
Sbjct: 61  VRSYDE----DHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTC 120

Query: 121 PLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ 155
           PLCRCFF  +N + + K +RFLVP DNPS LYYFLQ
Sbjct: 121 PLCRCFFLEDNHKMDTK-WRFLVP-DNPSSLYYFLQ 145

[Close]

BLAST of Sed0021279 vs. TAIR 10
Match: AT4G38140.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 71  DRSTEEEM-CSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFFNIEN 130
           D+  EEE+ C ICL EF   D+V  L  C H+FH +CIE WL +   TCPLCR F     
Sbjct: 53  DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVLAPT 112

[Close]

BLAST of Sed0021279 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-11
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 58  LPVRKYGE---LRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKN 117
           +PV K+ +   +   +D+S   + CS+CL EF   + +  + NCCHVFH DCI+ WL+ N
Sbjct: 110 IPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGN 169

Query: 118 RFTCPLCRCFFNIE 129
              CPLCR   + E
Sbjct: 170 A-NCPLCRTSVSCE 182

[Close]

BLAST of Sed0021279 vs. TAIR 10
Match: AT1G63840.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-11
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 55  GGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKW-LEK 114
           G  LPV ++ ++ R      E E C++CL +F   D +  LTNC H+FH  C+++W +  
Sbjct: 70  GEMLPVVRFSDINR-----PESECCAVCLYDFENDDEIRRLTNCRHIFHRGCLDRWMMGY 129

Query: 115 NRFTCPLCRCFF 126
           N+ TCPLCR  F
Sbjct: 130 NQMTCPLCRTQF 136

[Close]

BLAST of Sed0021279 vs. TAIR 10
Match: AT4G00305.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-11
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 58  LPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFT 117
           LP  K+ ++     R    E C IC  EF  GD V  L NC HV+H  CI++W++ ++ T
Sbjct: 53  LPATKFEDI---SSRVNPPESCRICQDEFDGGDEVRCLRNCVHVYHKTCIDRWIQDDKMT 112

Query: 118 CPLCR 123
           CPLCR
Sbjct: 113 CPLCR 114

[Close]

BLAST of Sed0021279 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 5.7e-11
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 55  GGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKW-LEK 114
           G  LPV ++ EL R    S   + C++CL EF   D +  LTNC H+FH  C+++W +  
Sbjct: 82  GEILPVIRFSELTRPGFGS-GSDCCAVCLHEFENDDEIRRLTNCQHIFHRSCLDRWMMGY 141

Query: 115 NRFTCPLCRCFF 126
           N+ TCPLCR  F
Sbjct: 142 NQMTCPLCRTPF 152

The following BLAST results are available for this feature:

BLAST of Sed0021279 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010790.1	4.5e-50	68.83	RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022944066.1	7.6e-50	68.18	RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 fin...	[more]
XP_023512248.1	1.3e-49	67.53	RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947864.1	6.3e-44	64.78	E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata]	[more]
KAG6604984.1	8.2e-44	65.38	RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]

BLAST of Sed0021279 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL4	1.6e-10	49.18	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1	[more]
P93823	4.7e-10	40.54	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q9XF92	3.0e-09	41.18	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q8H7N9	5.2e-09	43.75	E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9LY41	1.2e-08	43.94	E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV...	[more]

BLAST of Sed0021279 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FTE6	3.7e-50	68.18	RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 ...	[more]
A0A6J1G855	3.0e-44	64.78	E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1I5X8	2.4e-41	69.63	RING-H2 finger protein ATL18 OS=Cucurbita maxima OX=3661 GN=LOC111469894 PE=4 SV...	[more]
A0A6J1CHK3	2.6e-35	59.31	RING-H2 finger protein ATL64 OS=Momordica charantia OX=3673 GN=LOC111011236 PE=4...	[more]
A0A5A7TXY0	3.5e-32	53.21	RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Sed0021279 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38140.1	1.1e-11	49.18	RING/U-box superfamily protein	[more]
AT1G04360.1	3.3e-11	40.54	RING/U-box superfamily protein	[more]
AT1G63840.1	3.3e-11	40.28	RING/U-box superfamily protein	[more]
AT4G00305.1	4.4e-11	43.08	RING/U-box superfamily protein	[more]
AT5G41400.1	5.7e-11	43.06	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 79..121 e-value: 2.1E-5 score: 34.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 78..122 e-value: 2.3E-13 score: 50.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 79..122 score: 12.740079
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 55..126 e-value: 1.9E-17 score: 64.7
None	No IPR available	PANTHER	PTHR45969:SF9	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	coord: 8..125
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 8..125
None	No IPR available	CDD	cd16448	RING-H2	coord: 79..122 e-value: 1.60995E-14 score: 61.6991
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 69..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021279.1	Sed0021279.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
cellular_component	GO:0016021	integral component of membrane