Sed0021260 (gene) Chayote v1

Overview


Name	Sed0021260
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG07: 35740029 .. 35740595 (-)
RNA-Seq Expression	Sed0021260
Synteny	Sed0021260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATTATTGGGTTTCTTGTGTACATGAATGGACCAAATAGTATCGAGTACGACGTTCCACCTTGTACACAAATTAATGCACCTAGGGACATTGACTTCCACTTATTCATCAATGGATTATGTCAAGTGCTTTCAATAGAAAGAAGTGAAGAAATTGAGATTGCTTTTAAGTACGGAACTATTAAGATACCCTTACAGAATGTGAATGAATTCAATTTCATGAAAAACATTGCTACTTCAGAAGCAATACACTTGTATGTTACTCGACCACACATTCATAGTACATCACAAGATGAACAATATATGGAGGAAGAAGAAATAGAGGAGGATGACAAGGAAAATGCCACATATCCAGGAATAAATACATCCAATATTGATGACCCGCCGTTTACTAATGAATTAGAGAGTTCTTCAGCCGAGGACTCTGAGTCATTCCAGGGTGTAGATGTAGTCCTTTCATTTTACACTACATTGAATATGGATGTTGTTAATGCTCTATCAAATAGAGGCATTGAACTAGAGATTGATGGACCAAACACATTGAGAAAAAGGATGATTTTTTAA

mRNA sequence

ATGGACATTATTGGGTTTCTTGTGTACATGAATGGACCAAATAGTATCGAGTACGACGTTCCACCTTGTACACAAATTAATGCACCTAGGGACATTGACTTCCACTTATTCATCAATGGATTATGTCAAGTGCTTTCAATAGAAAGAAGTGAAGAAATTGAGATTGCTTTTAAGTACGGAACTATTAAGATACCCTTACAGAATGTGAATGAATTCAATTTCATGAAAAACATTGCTACTTCAGAAGCAATACACTTGTATGTTACTCGACCACACATTCATAGTACATCACAAGATGAACAATATATGGAGGAAGAAGAAATAGAGGAGGATGACAAGGAAAATGCCACATATCCAGGAATAAATACATCCAATATTGATGACCCGCCGTTTACTAATGAATTAGAGAGTTCTTCAGCCGAGGACTCTGAGTCATTCCAGGGTGTAGATGTAGTCCTTTCATTTTACACTACATTGAATATGGATGTTGTTAATGCTCTATCAAATAGAGGCATTGAACTAGAGATTGATGGACCAAACACATTGAGAAAAAGGATGATTTTTTAA

Coding sequence (CDS)

ATGGACATTATTGGGTTTCTTGTGTACATGAATGGACCAAATAGTATCGAGTACGACGTTCCACCTTGTACACAAATTAATGCACCTAGGGACATTGACTTCCACTTATTCATCAATGGATTATGTCAAGTGCTTTCAATAGAAAGAAGTGAAGAAATTGAGATTGCTTTTAAGTACGGAACTATTAAGATACCCTTACAGAATGTGAATGAATTCAATTTCATGAAAAACATTGCTACTTCAGAAGCAATACACTTGTATGTTACTCGACCACACATTCATAGTACATCACAAGATGAACAATATATGGAGGAAGAAGAAATAGAGGAGGATGACAAGGAAAATGCCACATATCCAGGAATAAATACATCCAATATTGATGACCCGCCGTTTACTAATGAATTAGAGAGTTCTTCAGCCGAGGACTCTGAGTCATTCCAGGGTGTAGATGTAGTCCTTTCATTTTACACTACATTGAATATGGATGTTGTTAATGCTCTATCAAATAGAGGCATTGAACTAGAGATTGATGGACCAAACACATTGAGAAAAAGGATGATTTTTTAA

Protein sequence

MDIIGFLVYMNGPNSIEYDVPPCTQINAPRDIDFHLFINGLCQVLSIERSEEIEIAFKYGTIKIPLQNVNEFNFMKNIATSEAIHLYVTRPHIHSTSQDEQYMEEEEIEEDDKENATYPGINTSNIDDPPFTNELESSSAEDSESFQGVDVVLSFYTTLNMDVVNALSNRGIELEIDGPNTLRKRMIF

Homology

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BLAST of Sed0021260 vs. NCBI nr
Match: XP_038877923.1 (uncharacterized protein LOC120070133 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-08
Identity = 59/205 (28.78%), Postives = 100/205 (48.78%), Query Frame = 0


Query: 1   MDIIGFLVYM-----NGPNSIEYDVPPCTQINAPRDIDFHLFINGLCQVLSIERSEEIEI 60
           MD++ FL YM     NGP+ IEYD  P  +IN  R  DF+  I+G     SI R + +E+
Sbjct: 1   MDVVEFLCYMHGNIVNGPSGIEYDRQPSLRINMHRQDDFNTLIDGFYDAYSINRDDVVEV 60

Query: 61  AFKYGT--------IKIPLQNVNEFNFMKNIA--TSEAIHLYVTRPHIHSTSQDEQYMEE 120
            F+YG+        I I L++  +  FM + A      + LY+++P + S +   + +E 
Sbjct: 61  IFRYGSYVARSTFHIPISLRSDIDVQFMMSNAPYPPNRVELYISQPSVPSPTSTREEVET 120

Query: 121 EEIEEDDKENATYPGINTSNIDDPPFTNELESSSAEDSESFQGVDVVLSFYTTLNMDVVN 180
            E+E    E+  Y     +N D+    ++ +    + S  F GV  V   +T ++++ + 
Sbjct: 121 VELESHVVEDEHYDPTIATN-DEEVKMDDDDIDLDQLSSQFYGVHEVPETFTEIDLNEMT 180

Query: 181 AL--SNRGIELEIDGPNTLRKRMIF 189
               S  G +  + G ++L K MIF
Sbjct: 181 TEPDSTTGEDSNM-GSDSLLKGMIF 203

The following BLAST results are available for this feature:

BLAST of Sed0021260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877923.1	1.0e-08	28.78	uncharacterized protein LOC120070133 [Benincasa hispida]	[more]

BLAST of Sed0021260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0021260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0021260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021260.1	Sed0021260.1	mRNA