Sed0021210 (gene) Chayote v1

Overview


Name	Sed0021210
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L38
Location	LG11: 28209877 .. 28211686 (+)
RNA-Seq Expression	Sed0021210
Synteny	Sed0021210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAGCATTTCTCTGAAACCCTAATTCTAACCCTCTTCTCGTTTTAATCAGTAGACAACGCCGTTCGTATCCGCATCGCTCCTCTGCTTCTCACAACCCTAAAAATGGTGATCTCTATCGTTCTCTTAGTTCCTACGATTTTTCTGTTTATTGTAGTGTTGATTTATGTTCTTGTTCATGACTGAGTTTCATTGATTTCTCTGCTCTCTGTATGCTTGAGTTCTCTAATTATTTGAAGACTGTAAACATGCTTTAGAATACTGTTCGAATGCTCATGATCTTCAACTGTCGTGGAAAGTTTTATTTTGAATAATCGAATGAAGAATTGGGTGTTGGTGAGGAGTTGGATGAGATTACGTTATTTTTAGAAGTGTTGATTACGTTCTGTGTGAAATTGTTGATTAATCGGCACTGGTTAAGTTTGTGACATTAATGCGTAGATACTTTTGGTGTCTCGGTTCCTTTAATGTCTCCCGGTATCTGAGTTAGGGATGGGTGTGGTTACCCTGGATGTAGTGGAGTGCAGCTCTGATTTCCGGTCTTCAAAAAAAAAGAAAAAAGATACTCCACCATTGCAAAAATAAAGTTATGGTTGGATAATTTTATCCCTTGTCGTTTTTTGTAGGTTAGTATTTAATTTCCTTGAAGTTTTTTTTTTTACAAAAAAATGCTGTAGGGTCAGGGTGTATATCTTGTGACAATTTTTGAAAAATGGCTTTGATTGATTTCTAATGCTTAGAATATTTGAACTTGGTTTTGTGTTATGAGTTATCTTTATTATGAGGTTCGTTCATTCATATTACAAAGTTGTTTGATATTTACATTGTTTTGAGCATTCCTATAAGTGAATGGGTTGTATTTATGCATCGTTTCTGTCTCTGATGTTATCATGAATTGTTTCCAATCCATGTTTTGCTTTTTTTCGTTGAACTTGCCGTTATGAACGCCATTCCTTTACGATCTCCAGAACAGTATGGCTGAGATTATCGTTTGTTTCTCTTGTTAACCAGCCGAAGCAAATCCATGAGATCAAAGACTTTCTTCTCACTGCAAGAAGGAAGGATGCCCGTTCTGTGAAAATCAAGAGGAGCAAAGATGAAGTCAAGTTTAAGGTTCGCTGCTCCAAGTACCTTTACACCCTCTGCGTGTTCGACTCCGAGAAGGCCGACAAGTTGAAGCAGTCTCTTCCACCAGGTATTCTTTTTAGTGAACACGTAAACATTCTGCGGTTGTCCTGTTAAATTGTGGGCTGTGGCATTTGCATTATTTAGTAAGAACTGCAGTAATAGAGTAGTTGTCTATTTGATCTAGGAAATTTTTTTGTTTTGTTAAAATTTTATACTTGAATTTGAATTTCTGGGTATTCTTGTTCAGTATATACTTAAACCATTCATTCATATTTTGGTTTAAATTGTTGTAGGTTTGCCTGTGCAAGAACTTTGAAGTAGTGAGCTATTTTCTTAGATTGAGATGCAAAAAATCAGGAGTTGAAGGAAGCCTTTGTTATTTCTTTCTTATTGTCAGTGATGTTTGGATGTTTTGGTAGTTCATTTATGCAGGGACTCTCATTTTTGTCACAATGCATGAGACCGGAGCTTGTTACCTTTTATTGTTTCTTTAATTTTATGAATATTATGAGAGATTTGTTCATCGTTGATCATCATTGCCCCTTTTGCTCCCTTTTGGTGTTTCTTGGAGTTGGTTTACCAAATAGAGATATTACGTTTGCTTACAACAGAACAATGGAGCATCTTTCAATTGGATGTTCTTTGTGCACTTTGATGAAAAAAAGTTCATATATGATCTC

mRNA sequence

AAAAAAAGCATTTCTCTGAAACCCTAATTCTAACCCTCTTCTCGTTTTAATCAGTAGACAACGCCGTTCGTATCCGCATCGCTCCTCTGCTTCTCACAACCCTAAAAATGCCGAAGCAAATCCATGAGATCAAAGACTTTCTTCTCACTGCAAGAAGGAAGGATGCCCGTTCTGTGAAAATCAAGAGGAGCAAAGATGAAGTCAAGTTTAAGGTTCGCTGCTCCAAGTACCTTTACACCCTCTGCGTGTTCGACTCCGAGAAGGCCGACAAGTTGAAGCAGTCTCTTCCACCAGGTTTGCCTGTGCAAGAACTTTGAAGTAGTGAGCTATTTTCTTAGATTGAGATGCAAAAAATCAGGAGTTGAAGGAAGCCTTTGTTATTTCTTTCTTATTGTCAGTGATGTTTGGATGTTTTGGTAGTTCATTTATGCAGGGACTCTCATTTTTGTCACAATGCATGAGACCGGAGCTTGTTACCTTTTATTGTTTCTTTAATTTTATGAATATTATGAGAGATTTGTTCATCGTTGATCATCATTGCCCCTTTTGCTCCCTTTTGGTGTTTCTTGGAGTTGGTTTACCAAATAGAGATATTACGTTTGCTTACAACAGAACAATGGAGCATCTTTCAATTGGATGTTCTTTGTGCACTTTGATGAAAAAAAGTTCATATATGATCTC

Coding sequence (CDS)

ATGCCGAAGCAAATCCATGAGATCAAAGACTTTCTTCTCACTGCAAGAAGGAAGGATGCCCGTTCTGTGAAAATCAAGAGGAGCAAAGATGAAGTCAAGTTTAAGGTTCGCTGCTCCAAGTACCTTTACACCCTCTGCGTGTTCGACTCCGAGAAGGCCGACAAGTTGAAGCAGTCTCTTCCACCAGGTTTGCCTGTGCAAGAACTTTGA

Protein sequence

MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

Homology

[Close]

BLAST of Sed0021210 vs. NCBI nr
Match: XP_021673719.1 (60S ribosomal protein L38-like [Hevea brasiliensis])

HSP 1 Score: 133.3 bits (334), Expect = 8.2e-28
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL VQEL
Sbjct: 61 PPGLSVQEL 69

[Close]

BLAST of Sed0021210 vs. NCBI nr
Match: XP_007207316.1 (60S ribosomal protein L38 [Prunus persica] >XP_007224245.2 60S ribosomal protein L38 [Prunus persica] >XP_008218474.1 PREDICTED: 60S ribosomal protein L38 [Prunus mume] >XP_008222531.1 PREDICTED: 60S ribosomal protein L38 [Prunus mume] >XP_021805331.1 60S ribosomal protein L38 [Prunus avium] >XP_023909162.1 60S ribosomal protein L38 [Quercus suber] >XP_023928529.1 60S ribosomal protein L38 [Quercus suber] >XP_034201790.1 60S ribosomal protein L38 [Prunus dulcis] >XP_034219661.1 60S ribosomal protein L38 [Prunus dulcis] >PIN21627.1 60S ribosomal protein L38 [Handroanthus impetiginosus] >PQQ09361.1 60S ribosomal protein L38 [Prunus yedoensis var. nudiflora] >CAB4285592.1 unnamed protein product [Prunus armeniaca] >ONI05243.1 hypothetical protein PRUPE_6G363900 [Prunus persica] >ONI29323.1 hypothetical protein PRUPE_1G193400 [Prunus persica])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL VQ+L
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Sed0021210 vs. NCBI nr
Match: BBG93615.1 (Ribosomal L38e protein family [Prunus dulcis])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 91  MPKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDSEKADKLKQSL 150

Query: 61  PPGLPVQEL 70
           PPGL VQ+L
Sbjct: 151 PPGLSVQDL 159

[Close]

BLAST of Sed0021210 vs. NCBI nr
Match: VVA31613.1 (PREDICTED: 60S ribosomal, partial [Prunus dulcis])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 79  MPKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDSEKADKLKQSL 138

Query: 61  PPGLPVQEL 70
           PPGL VQ+L
Sbjct: 139 PPGLSVQDL 147

[Close]

BLAST of Sed0021210 vs. NCBI nr
Match: CAA2620548.1 (unnamed protein product [Spirodela intermedia] >CAA7396634.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL VQE+
Sbjct: 61 PPGLSVQEI 69

[Close]

BLAST of Sed0021210 vs. ExPASy Swiss-Prot
Match: O22860 (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-29
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL VQ+L
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Sed0021210 vs. ExPASy Swiss-Prot
Match: P46291 (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-27
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL VQ+L
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Sed0021210 vs. ExPASy Swiss-Prot
Match: Q95V84 (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-26
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL V+EL
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of Sed0021210 vs. ExPASy Swiss-Prot
Match: Q32PB9 (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-24
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL V+EL
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of Sed0021210 vs. ExPASy Swiss-Prot
Match: P63173 (60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-24
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL V+EL
Sbjct: 61 PPGLAVKEL 69

[Close]

BLAST of Sed0021210 vs. ExPASy TrEMBL
Match: A0A7I8IQP0 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_05006717 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-28
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL VQE+
Sbjct: 61 PPGLSVQEI 69

[Close]

BLAST of Sed0021210 vs. ExPASy TrEMBL
Match: M5WNY0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G193400 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-28
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL VQ+L
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Sed0021210 vs. ExPASy TrEMBL
Match: A0A314ZFP9 (60S ribosomal protein L38 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_30042 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-28
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL VQ+L
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Sed0021210 vs. ExPASy TrEMBL
Match: A0A6J5W2Q8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS41435 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-28
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL VQ+L
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Sed0021210 vs. ExPASy TrEMBL
Match: A0A5E4FVX4 (PREDICTED: 60S ribosomal (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B033102 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-28
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 79  MPKQIHEIKDFLLTARRKDARSVKIKRSKDAVKFKVRCSKYLYTLCVFDSEKADKLKQSL 138

Query: 61  PPGLPVQEL 70
           PPGL VQ+L
Sbjct: 139 PPGLSVQDL 147

[Close]

BLAST of Sed0021210 vs. TAIR 10
Match: AT2G43460.1 (Ribosomal L38e protein family )

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-30
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL VQ+L
Sbjct: 61 PPGLSVQDL 69

[Close]

BLAST of Sed0021210 vs. TAIR 10
Match: AT3G59540.1 (Ribosomal L38e protein family )

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-30
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLPVQEL 70
          PPGL VQ+L
Sbjct: 61 PPGLSVQDL 69

The following BLAST results are available for this feature:

BLAST of Sed0021210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021673719.1	8.2e-28	97.10	60S ribosomal protein L38-like [Hevea brasiliensis]	[more]
XP_007207316.1	1.4e-27	95.65	60S ribosomal protein L38 [Prunus persica] >XP_007224245.2 60S ribosomal protein...	[more]
BBG93615.1	1.4e-27	95.65	Ribosomal L38e protein family [Prunus dulcis]	[more]
VVA31613.1	1.4e-27	95.65	PREDICTED: 60S ribosomal, partial [Prunus dulcis]	[more]
CAA2620548.1	1.4e-27	95.65	unnamed protein product [Spirodela intermedia] >CAA7396634.1 unnamed protein pro...	[more]

BLAST of Sed0021210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22860	2.0e-29	92.75	60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1	[more]
P46291	1.1e-27	88.41	60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1	[more]
Q95V84	2.1e-26	84.06	60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1	[more]
Q32PB9	3.3e-24	78.26	60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4	[more]
P63173	3.3e-24	78.26	60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2	[more]

BLAST of Sed0021210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7I8IQP0	6.8e-28	95.65	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_05006717 PE=3 SV...	[more]
M5WNY0	6.8e-28	95.65	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G193400 PE=3 SV=1	[more]
A0A314ZFP9	6.8e-28	95.65	60S ribosomal protein L38 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_3...	[more]
A0A6J5W2Q8	6.8e-28	95.65	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS41435 PE=3 S...	[more]
A0A5E4FVX4	6.8e-28	95.65	PREDICTED: 60S ribosomal (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B033102 ...	[more]

BLAST of Sed0021210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43460.1	1.4e-30	92.75	Ribosomal L38e protein family	[more]
AT3G59540.1	1.4e-30	92.75	Ribosomal L38e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 2..68 e-value: 8.9E-35 score: 118.6
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 1..69
IPR038464	Ribosomal protein L38e superfamily	GENE3D	3.30.720.90		coord: 1..69 e-value: 2.1E-36 score: 125.8
None	No IPR available	PANTHER	PTHR10965:SF18	SUBFAMILY NOT NAMED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021210.1	Sed0021210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022618	ribonucleoprotein complex assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome