Sed0021208 (gene) Chayote v1

Overview
NameSed0021208
Typegene
OrganismSechium edule (Chayote v1)
DescriptionCDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
LocationLG05: 7233905 .. 7234165 (-)
RNA-Seq ExpressionSed0021208
SyntenySed0021208
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGCAAAGCACCAACCTGGGCTGATCAGTGGGGATCGGGCAATTATGGCGTCGAAGACGACGACAATAACAAGGTGGTGGTGGCAAAGAAAGGGAGCGGCGGGAAAGCCAATATTAGCAAGAAGATGACTGAGGTAAAGGCTGCAGCCTCAGCTGGGTTTGTGAAGGTAAAGGCTGTTACAGTTGTGGGGGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGATCAAGAAAAAGGTTTCCAAATGA

mRNA sequence

ATGGGAAGCAAAGCACCAACCTGGGCTGATCAGTGGGGATCGGGCAATTATGGCGTCGAAGACGACGACAATAACAAGGTGGTGGTGGCAAAGAAAGGGAGCGGCGGGAAAGCCAATATTAGCAAGAAGATGACTGAGGTAAAGGCTGCAGCCTCAGCTGGGTTTGTGAAGGTAAAGGCTGTTACAGTTGTGGGGGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGATCAAGAAAAAGGTTTCCAAATGA

Coding sequence (CDS)

ATGGGAAGCAAAGCACCAACCTGGGCTGATCAGTGGGGATCGGGCAATTATGGCGTCGAAGACGACGACAATAACAAGGTGGTGGTGGCAAAGAAAGGGAGCGGCGGGAAAGCCAATATTAGCAAGAAGATGACTGAGGTAAAGGCTGCAGCCTCAGCTGGGTTTGTGAAGGTAAAGGCTGTTACAGTTGTGGGGGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGATCAAGAAAAAGGTTTCCAAATGA

Protein sequence

MGSKAPTWADQWGSGNYGVEDDDNNKVVVAKKGSGGKANISKKMTEVKAAASAGFVKVKAVTVVGAQKVKSGTSVGIKWIKKKVSK
Homology
BLAST of Sed0021208 vs. NCBI nr
Match: KAA0059574.1 (hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE8652289.1 hypothetical protein Csa_022099 [Cucumis sativus] >TYK24204.1 hypothetical protein E5676_scaffold27G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 6.2e-25
Identity = 70/90 (77.78%), Postives = 72/90 (80.00%), Query Frame = 0

Query: 1  MGSKAPTWADQWGSGNYGVEDDDNNKVVVAKKGSGGKANISKKMTEVKAAASAGFVKVKA 60
          MGSKAP+WADQWGSGNYGVEDDDNN  V  K  S G  N SKKM EVKAAASAGFVK KA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNG--NSSKKMAEVKAAASAGFVKAKA 60

Query: 61 VTVVGAQKVKSGTSVGIKWIK----KKVSK 87
          V  VGAQKVKSGTSVGIKW+K    KKVSK
Sbjct: 61 VATVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

BLAST of Sed0021208 vs. NCBI nr
Match: KAG6604861.1 (hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 6.9e-24
Identity = 67/86 (77.91%), Postives = 73/86 (84.88%), Query Frame = 0

Query: 1   MGSKAPTWADQWGSGNYGVEDDDNNKVVVAKKGSGGKANISKKMTEVKAAASAGFVKVKA 60
           MGSKAP+WADQWGSGNYGVEDDD    +VAKKGSG  ++ SKKMTEVKAAASAGFVK KA
Sbjct: 80  MGSKAPSWADQWGSGNYGVEDDDK---MVAKKGSGNGSS-SKKMTEVKAAASAGFVKAKA 139

Query: 61  VTVVGAQKVKSGTSVGIKWIKKKVSK 87
           V  VGAQKVKSGTSVGIKW+K +  K
Sbjct: 140 VAAVGAQKVKSGTSVGIKWVKNQYQK 161

BLAST of Sed0021208 vs. NCBI nr
Match: KAG7034974.1 (hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 70/90 (77.78%), Postives = 75/90 (83.33%), Query Frame = 0

Query: 1   MGSKAPTWADQWGSGNYGVEDDDNNKVVVAKKGSGGKANISKKMTEVKAAASAGFVKVKA 60
           MGSKAP+WADQWGSGNYGVEDDD    +VAKKGS   ++ SKKMTEVKAAASAGFVK KA
Sbjct: 91  MGSKAPSWADQWGSGNYGVEDDDK---MVAKKGSSNGSS-SKKMTEVKAAASAGFVKAKA 150

Query: 61  VTVVGAQKVKSGTSVGIKWIK----KKVSK 87
           V  VGAQKVKSGTSVGIKW+K    KKVSK
Sbjct: 151 VAAVGAQKVKSGTSVGIKWVKNQYQKKVSK 176

BLAST of Sed0021208 vs. NCBI nr
Match: KAG7010736.1 (hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.6 bits (283), Expect = 8.4e-22
Identity = 65/90 (72.22%), Postives = 71/90 (78.89%), Query Frame = 0

Query: 1  MGSKAPTWADQWGSGNYGVEDDDNNKVVVAKKGSGGKANISKKMTEVKAAASAGFVKVKA 60
          MGSKAP+WADQWGSG+YGVEDDDN    + KKGS    N SKKM +VKAAASAGFVK K+
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDN--TAMTKKGS-SNGNSSKKMADVKAAASAGFVKAKS 60

Query: 61 VTVVGAQKVKSGTSVGIKWIK----KKVSK 87
             VGAQKVKSGTSVGIKW+K    KKVSK
Sbjct: 61 AAAVGAQKVKSGTSVGIKWVKNQYQKKVSK 87

BLAST of Sed0021208 vs. NCBI nr
Match: KAG6570886.1 (hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-21
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = 0

Query: 1  MGSKAPTWADQWGSGNYGVEDDDNNKVVVAKKGSGGKANISKKMTEVKAAASAGFVKVKA 60
          MGSKAP+WADQWGSG+YGVEDDDN    + KKGS    N SKKM +VKAAASAGFVK K+
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDN--TAMTKKGS-SNGNSSKKMADVKAAASAGFVKAKS 60

Query: 61 VTVVGAQKVKSGTSVGIKWIKKKVSK 87
             VGAQKVKSGTSVGIKW+K +  K
Sbjct: 61 AAAVGAQKVKSGTSVGIKWVKNQYQK 83

BLAST of Sed0021208 vs. ExPASy TrEMBL
Match: A0A5D3DKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00040 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 70/90 (77.78%), Postives = 72/90 (80.00%), Query Frame = 0

Query: 1  MGSKAPTWADQWGSGNYGVEDDDNNKVVVAKKGSGGKANISKKMTEVKAAASAGFVKVKA 60
          MGSKAP+WADQWGSGNYGVEDDDNN  V  K  S G  N SKKM EVKAAASAGFVK KA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNG--NSSKKMAEVKAAASAGFVKAKA 60

Query: 61 VTVVGAQKVKSGTSVGIKWIK----KKVSK 87
          V  VGAQKVKSGTSVGIKW+K    KKVSK
Sbjct: 61 VATVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

BLAST of Sed0021208 vs. ExPASy TrEMBL
Match: A0A0A0LR11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 70/90 (77.78%), Postives = 72/90 (80.00%), Query Frame = 0

Query: 1   MGSKAPTWADQWGSGNYGVEDDDNNKVVVAKKGSGGKANISKKMTEVKAAASAGFVKVKA 60
           MGSKAP+WADQWGSGNYGVEDDDNN  V  K  S G  N SKKM EVKAAASAGFVK KA
Sbjct: 86  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNG--NSSKKMAEVKAAASAGFVKAKA 145

Query: 61  VTVVGAQKVKSGTSVGIKWIK----KKVSK 87
           V  VGAQKVKSGTSVGIKW+K    KKVSK
Sbjct: 146 VATVGAQKVKSGTSVGIKWVKNQYQKKVSK 173

BLAST of Sed0021208 vs. ExPASy TrEMBL
Match: A0A5C7HG95 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.5e-20
Identity = 59/86 (68.60%), Postives = 67/86 (77.91%), Query Frame = 0

Query: 1  MGSKAPTWADQWGSGNYGVEDDDNNKVVVAKKGSGGKANISKKMTEVKAAASAGFVKVKA 60
          MGSKAP+WADQWGSG++G E+DD NK+V  K  SGG    SKKM E KAAASAGF K KA
Sbjct: 1  MGSKAPSWADQWGSGSFGDEEDD-NKLVTKKSSSGGS---SKKMAEAKAAASAGFDKAKA 60

Query: 61 VTVVGAQKVKSGTSVGIKWIKKKVSK 87
             VGAQKVKSGTSVG+KW+KK+  K
Sbjct: 61 AASVGAQKVKSGTSVGLKWVKKQYQK 82

BLAST of Sed0021208 vs. ExPASy TrEMBL
Match: V4UEV4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.7e-17
Identity = 51/86 (59.30%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 1  MGSKAPTWADQWGSGNYGVEDDDNNKVVVAKKGSGGKANISKKMTEVKAAASAGFVKVKA 60
          MGSKAP+WADQWG+G +GV+++D+  V      SGG      K+TEVKAAASAGF K K+
Sbjct: 1  MGSKAPSWADQWGTGGFGVDEEDDKLVTKNASSSGG-----NKITEVKAAASAGFDKAKS 60

Query: 61 VTVVGAQKVKSGTSVGIKWIKKKVSK 87
             VGAQKVK+GTS GIKW+KK+  K
Sbjct: 61 AAAVGAQKVKAGTSAGIKWVKKQYQK 81

BLAST of Sed0021208 vs. ExPASy TrEMBL
Match: A0A2H5N696 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_278480 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0

Query: 1  MGSKAPTWADQWGSGNYGVEDDDNNKVVVAKKGSGGKANISKKMTEVKAAASAGFVKVKA 60
          MGSKAP+WADQWG+G +GV+++D+  V      SGG      K+TEVKAAASAGF K  +
Sbjct: 1  MGSKAPSWADQWGTGGFGVDEEDDKLVTKNASSSGG-----NKITEVKAAASAGFDKAIS 60

Query: 61 VTVVGAQKVKSGTSVGIKWIKKKVSK 87
             VGAQKV++GTS GIKW+KK+  K
Sbjct: 61 AAAVGAQKVRAGTSAGIKWVKKQYQK 81

BLAST of Sed0021208 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 3.8e-04
Identity = 29/81 (35.80%), Postives = 42/81 (51.85%), Query Frame = 0

Query: 7  TWADQW-GSGNYGVEDDDNNKVVVAKKGSGGKANISKKMTEVKAAASAGFVKVKAVTVVG 66
          +WADQW  SG+        +  VV   GSG  +N     T+ K     G  K KAV   G
Sbjct: 5  SWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSN----TTKYKEKMGQGLDKTKAVASSG 64

Query: 67 AQKVKSGTSVGIKWIKKKVSK 87
           +K+K+G+++G +W+K K  K
Sbjct: 65 FKKLKTGSAIGFRWVKDKYHK 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059574.16.2e-2577.78hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE865... [more]
KAG6604861.16.9e-2477.91hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7034974.11.5e-2377.78hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7010736.18.4e-2272.22hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570886.11.9e-2170.93hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DKS53.0e-2577.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LR113.0e-2577.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1[more]
A0A5C7HG956.5e-2068.60Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1[more]
V4UEV46.7e-1759.30Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 ... [more]
A0A2H5N6961.3e-1556.98Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_278480 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G19020.13.8e-0435.80unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR33386:SF13ANKYRIN REPEAT PROTEINcoord: 1..86
NoneNo IPR availablePANTHERPTHR33386OS02G0740600 PROTEINcoord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0021208.1Sed0021208.1mRNA