Sed0021198 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCTAAGATCACGCAATCTCAGAAATCCTATAAGATCACGCCAAGTAAATTCAATCCCCCCACCCTTCAAGAAACCTCTAAGAATTTGAAATCCAAAAAAACAAATAAGGAATCAAATTCCCCCTTTTATTATAAAACCCCCAAATTCCAAAACCAAAATCATCATTTTCAATTTTCAAATTTTCAAAAACAACAAAAAAAAAAGAAAGATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTAATCTTCGGAAAGTTCGTTAGGGCTTCGTCTTCCGTTCCGTCCTTCGCTCCCAACCACGGCGGCGCCGCCGTCGCCGCCGCCTCGCCGGAGATCAACAAAGAGGAAGCGAAGAAGCCGAAAAGTTCGCCGATTAGGCCAAGATTTGCTCTGGAATTTGATGGCATTAATTGCTTTGAGACTCTTGTCTCCAATTGAAGTTTTGTTTTAATTTTTATTCTTTTGATTTTTATTTTTTTTTAGGTGAT GCTAAGATCACGCAATCTCAGAAATCCTATAAGATCACGCCAAGTAAATTCAATCCCCCCACCCTTCAAGAAACCTCTAAGAATTTGAAATCCAAAAAAACAAATAAGGAATCAAATTCCCCCTTTTATTATAAAACCCCCAAATTCCAAAACCAAAATCATCATTTTCAATTTTCAAATTTTCAAAAACAACAAAAAAAAAAGAAAGATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTAATCTTCGGAAAGTTCGTTAGGGCTTCGTCTTCCGTTCCGTCCTTCGCTCCCAACCACGGCGGCGCCGCCGTCGCCGCCGCCTCGCCGGAGATCAACAAAGAGGAAGCGAAGAAGCCGAAAAGTTCGCCGATTAGGCCAAGATTTGCTCTGGAATTTGATGGCATTAATTGCTTTGAGACTCTTGTCTCCAATTGAAGTTTTGTTTTAATTTTTATTCTTTTGATTTTTATTTTTTTTTAGGTGAT ATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTAATCTTCGGAAAGTTCGTTAGGGCTTCGTCTTCCGTTCCGTCCTTCGCTCCCAACCACGGCGGCGCCGCCGTCGCCGCCGCCTCGCCGGAGATCAACAAAGAGGAAGCGAAGAAGCCGAAAAGTTCGCCGATTAGGCCAAGATTTGCTCTGGAATTTGATGGCATTAATTGCTTTGAGACTCTTGTCTCCAATTGA MNSMFSFFDAFAAELIFGKFVRASSSVPSFAPNHGGAAVAAASPEINKEEAKKPKSSPIRPRFALEFDGINCFETLVSN Homology
BLAST of Sed0021198 vs. NCBI nr
Match: XP_011654674.1 (uncharacterized protein LOC105435432 [Cucumis sativus]) HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17 Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 0
BLAST of Sed0021198 vs. NCBI nr
Match: KAG6579594.1 (hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17 Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 0
BLAST of Sed0021198 vs. NCBI nr
Match: XP_022929066.1 (uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothetical protein SDJN02_22166, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17 Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 0
BLAST of Sed0021198 vs. NCBI nr
Match: XP_023522684.1 (uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 98.2 bits (243), Expect = 3.3e-17 Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 0
BLAST of Sed0021198 vs. NCBI nr
Match: KAA0042638.1 (uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK06039.1 uncharacterized protein E5676_scaffold376G001400 [Cucumis melo var. makuwa]) HSP 1 Score: 92.0 bits (227), Expect = 2.4e-15 Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0
BLAST of Sed0021198 vs. ExPASy TrEMBL
Match: A0A0A0KJT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17 Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 0
BLAST of Sed0021198 vs. ExPASy TrEMBL
Match: A0A6J1EM23 (uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC111435766 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17 Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 0
BLAST of Sed0021198 vs. ExPASy TrEMBL
Match: A0A5D3C6N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001400 PE=4 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15 Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0
BLAST of Sed0021198 vs. ExPASy TrEMBL
Match: A0A6J1E0L6 (uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026066 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10 Identity = 47/83 (56.63%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of Sed0021198 vs. ExPASy TrEMBL
Match: D7KID9 (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_473474 PE=4 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 4.1e-05 Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 0
BLAST of Sed0021198 vs. TAIR 10
Match: AT1G32920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32928.1); Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.0 bits (123), Expect = 2.6e-07 Identity = 35/77 (45.45%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of Sed0021198 vs. TAIR 10
Match: AT1G32928.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 52.0 bits (123), Expect = 2.6e-07 Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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