Sed0021198 (gene) Chayote v1

Overview
NameSed0021198
Typegene
OrganismSechium edule (Chayote v1)
DescriptionAvr9/Cf-9 rapidly elicited protein
LocationLG01: 66902750 .. 66903247 (-)
RNA-Seq ExpressionSed0021198
SyntenySed0021198
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTAAGATCACGCAATCTCAGAAATCCTATAAGATCACGCCAAGTAAATTCAATCCCCCCACCCTTCAAGAAACCTCTAAGAATTTGAAATCCAAAAAAACAAATAAGGAATCAAATTCCCCCTTTTATTATAAAACCCCCAAATTCCAAAACCAAAATCATCATTTTCAATTTTCAAATTTTCAAAAACAACAAAAAAAAAAGAAAGATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTAATCTTCGGAAAGTTCGTTAGGGCTTCGTCTTCCGTTCCGTCCTTCGCTCCCAACCACGGCGGCGCCGCCGTCGCCGCCGCCTCGCCGGAGATCAACAAAGAGGAAGCGAAGAAGCCGAAAAGTTCGCCGATTAGGCCAAGATTTGCTCTGGAATTTGATGGCATTAATTGCTTTGAGACTCTTGTCTCCAATTGAAGTTTTGTTTTAATTTTTATTCTTTTGATTTTTATTTTTTTTTAGGTGAT

mRNA sequence

GCTAAGATCACGCAATCTCAGAAATCCTATAAGATCACGCCAAGTAAATTCAATCCCCCCACCCTTCAAGAAACCTCTAAGAATTTGAAATCCAAAAAAACAAATAAGGAATCAAATTCCCCCTTTTATTATAAAACCCCCAAATTCCAAAACCAAAATCATCATTTTCAATTTTCAAATTTTCAAAAACAACAAAAAAAAAAGAAAGATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTAATCTTCGGAAAGTTCGTTAGGGCTTCGTCTTCCGTTCCGTCCTTCGCTCCCAACCACGGCGGCGCCGCCGTCGCCGCCGCCTCGCCGGAGATCAACAAAGAGGAAGCGAAGAAGCCGAAAAGTTCGCCGATTAGGCCAAGATTTGCTCTGGAATTTGATGGCATTAATTGCTTTGAGACTCTTGTCTCCAATTGAAGTTTTGTTTTAATTTTTATTCTTTTGATTTTTATTTTTTTTTAGGTGAT

Coding sequence (CDS)

ATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTAATCTTCGGAAAGTTCGTTAGGGCTTCGTCTTCCGTTCCGTCCTTCGCTCCCAACCACGGCGGCGCCGCCGTCGCCGCCGCCTCGCCGGAGATCAACAAAGAGGAAGCGAAGAAGCCGAAAAGTTCGCCGATTAGGCCAAGATTTGCTCTGGAATTTGATGGCATTAATTGCTTTGAGACTCTTGTCTCCAATTGA

Protein sequence

MNSMFSFFDAFAAELIFGKFVRASSSVPSFAPNHGGAAVAAASPEINKEEAKKPKSSPIRPRFALEFDGINCFETLVSN
Homology
BLAST of Sed0021198 vs. NCBI nr
Match: XP_011654674.1 (uncharacterized protein LOC105435432 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 0

Query: 1  MNSMFSFFDAFAAELIFGKFVRASSSVPSFAPNHGGAAVAAASP-EINKEEAKKPKSSPI 60
          MNSMFS FDAFAAE + G FVRASSSVPSF PN+  A+ A   P    KEE  K K+S +
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM 60

Query: 61 RPRFALEFDGINCFETLVSN 80
          +PRFALE DG+NCFETLV N
Sbjct: 61 KPRFALELDGLNCFETLVPN 80

BLAST of Sed0021198 vs. NCBI nr
Match: KAG6579594.1 (hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1   MNSMFSFFDAFAAELIFGKFVRASSSVPSFAPNHGGAAVAAASPEIN----KEEAK---K 60
           MNSMFSFFDAFAAE++ GKFV AS+SVPSF PN GG   A+++P  +    KEEA    K
Sbjct: 81  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAK 140

Query: 61  PKSSPIRPRFALEFDGINCFETLVSN 80
            K+S ++PRFALE DG+NCFETLV N
Sbjct: 141 SKNSLMKPRFALELDGLNCFETLVPN 166

BLAST of Sed0021198 vs. NCBI nr
Match: XP_022929066.1 (uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothetical protein SDJN02_22166, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MNSMFSFFDAFAAELIFGKFVRASSSVPSFAPNHGGAAVAAASPEIN----KEEAK---K 60
          MNSMFSFFDAFAAE++ GKFV AS+SVPSF PN GG   A+++P  +    KEEA    K
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAK 60

Query: 61 PKSSPIRPRFALEFDGINCFETLVSN 80
           K+S ++PRFALE DG+NCFETLV N
Sbjct: 61 SKNSLMKPRFALELDGLNCFETLVPN 86

BLAST of Sed0021198 vs. NCBI nr
Match: XP_023522684.1 (uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 98.2 bits (243), Expect = 3.3e-17
Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MNSMFSFFDAFAAELIFGKFVRASSSVPSFAPNHGGAAVAAASPEIN----KEEAK---K 60
          MNSMFSFFDAFAAE++ GKFV AS+SVPSF PN GG   A+++P  +    K+EA    K
Sbjct: 1  MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVAK 60

Query: 61 PKSSPIRPRFALEFDGINCFETLVSN 80
           K+S ++PRFALE DG+NCFETLV N
Sbjct: 61 SKNSSMKPRFALELDGLNCFETLVPN 86

BLAST of Sed0021198 vs. NCBI nr
Match: KAA0042638.1 (uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK06039.1 uncharacterized protein E5676_scaffold376G001400 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-15
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 1  MNSMFSFFDAFAAELIFG-KFVRASSSVPSFAP-NHGGAAVAAASPE---INKEEAKKPK 60
          MNSMFS FDAFAAE + G  FVRASSS+PSF P N+   A ++A P+     K+E  KPK
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNNAASSAVPKPLPSKKKEEPKPK 60

Query: 61 SSPIRPRFALEFDGINCFETLVSN 80
          +S ++PRFALE DG+NCFETLV N
Sbjct: 61 NSSVKPRFALELDGLNCFETLVPN 84

BLAST of Sed0021198 vs. ExPASy TrEMBL
Match: A0A0A0KJT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 0

Query: 1  MNSMFSFFDAFAAELIFGKFVRASSSVPSFAPNHGGAAVAAASP-EINKEEAKKPKSSPI 60
          MNSMFS FDAFAAE + G FVRASSSVPSF PN+  A+ A   P    KEE  K K+S +
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM 60

Query: 61 RPRFALEFDGINCFETLVSN 80
          +PRFALE DG+NCFETLV N
Sbjct: 61 KPRFALELDGLNCFETLVPN 80

BLAST of Sed0021198 vs. ExPASy TrEMBL
Match: A0A6J1EM23 (uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC111435766 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MNSMFSFFDAFAAELIFGKFVRASSSVPSFAPNHGGAAVAAASPEIN----KEEAK---K 60
          MNSMFSFFDAFAAE++ GKFV AS+SVPSF PN GG   A+++P  +    KEEA    K
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAK 60

Query: 61 PKSSPIRPRFALEFDGINCFETLVSN 80
           K+S ++PRFALE DG+NCFETLV N
Sbjct: 61 SKNSLMKPRFALELDGLNCFETLVPN 86

BLAST of Sed0021198 vs. ExPASy TrEMBL
Match: A0A5D3C6N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001400 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 1  MNSMFSFFDAFAAELIFG-KFVRASSSVPSFAP-NHGGAAVAAASPE---INKEEAKKPK 60
          MNSMFS FDAFAAE + G  FVRASSS+PSF P N+   A ++A P+     K+E  KPK
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNNAASSAVPKPLPSKKKEEPKPK 60

Query: 61 SSPIRPRFALEFDGINCFETLVSN 80
          +S ++PRFALE DG+NCFETLV N
Sbjct: 61 NSSVKPRFALELDGLNCFETLVPN 84

BLAST of Sed0021198 vs. ExPASy TrEMBL
Match: A0A6J1E0L6 (uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026066 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 47/83 (56.63%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 1  MNSMFSFFDAFAAELIFGKFVRASSSVPSFAPNHGGAAVAAASPE----INKEEAKKPKS 60
          MNSMFS FDAFAAEL+  K  RASS   SFAPN+G      + P      N E+ K  K+
Sbjct: 1  MNSMFSLFDAFAAELLMAKTFRASS---SFAPNNGSGGSVKSPPSNAAPDNLEQPKSNKN 60

Query: 61 SPIR-PRFALEFDGINCFETLVS 79
          S +R PR A EFDG+NCFETLVS
Sbjct: 61 SLLRPPRLAPEFDGLNCFETLVS 80

BLAST of Sed0021198 vs. ExPASy TrEMBL
Match: D7KID9 (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_473474 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.1e-05
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 1  MNSMFSFFDAFAAELIFGKFVRASS----SVPSFAPNHGGAAVAAASPEINKEEAKKPKS 60
          MNSMFS FDA  AE I GK V A+S    S  + A + GG   A+ S + N E+A K   
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYRSERNSASSSGGGQNASLSLK-NDEKASKNMD 60

Query: 61 SPIR-PRFALEFDGINCFETLV 78
           P + PRFALE DG+NCFET+V
Sbjct: 61 LPTKTPRFALELDGLNCFETIV 80

BLAST of Sed0021198 vs. TAIR 10
Match: AT1G32920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32928.1); Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-07
Identity = 35/77 (45.45%), Postives = 43/77 (55.84%), Query Frame = 0

Query: 1  MNSMFSFFDAFAAELIFGKFVRASSSVPSFAPNHGGAAVAAASPEINKEEAKKPKSSPIR 60
          MNSMFS FDA  AE + GK + ASS   + A     AA    + E     +KK       
Sbjct: 1  MNSMFSAFDALFAE-VMGKNLMASSFTATTATTKPAAAPQTQTQEKANASSKKIGLVQKI 60

Query: 61 PRFALEFDGINCFETLV 78
          PRFALE DG++CFET+V
Sbjct: 61 PRFALELDGLHCFETIV 76

BLAST of Sed0021198 vs. TAIR 10
Match: AT1G32928.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-07
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 1  MNSMFSFFDAFAAELIFGKFVRASSSVPSFAPNHGGAAVAA----ASPEINKEE-AKKPK 60
          MNSMFS FDA  AE I GK V A+S V     N   ++ +     AS  + K+E A K  
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYRSERNSASSSSSVGGQNASLSLKKDEKASKNM 60

Query: 61 SSPIR-PRFALEFDGINCFETLV 78
            P + PRFALE DG++CFET+V
Sbjct: 61 DLPTKTPRFALELDGLHCFETIV 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011654674.12.6e-1765.00uncharacterized protein LOC105435432 [Cucumis sativus][more]
KAG6579594.12.6e-1762.79hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022929066.12.6e-1762.79uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothet... [more]
XP_023522684.13.3e-1761.63uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo][more]
KAA0042638.12.4e-1560.71uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK0... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJT81.2e-1765.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1[more]
A0A6J1EM231.2e-1762.79uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC1114357... [more]
A0A5D3C6N31.2e-1560.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1E0L61.5e-1056.63uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026... [more]
D7KID94.1e-0551.22Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA... [more]
Match NameE-valueIdentityDescription
AT1G32920.12.6e-0745.45unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT1G32928.12.6e-0746.99unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33641OS06G0133500 PROTEINcoord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0021198.1Sed0021198.1mRNA