Sed0021186 (gene) Chayote v1

Overview


Name	Sed0021186
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Dynein light chain
Location	LG04: 42233572 .. 42235392 (+)
RNA-Seq Expression	Sed0021186
Synteny	Sed0021186

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGCCGCCGCCGCCATCGAGCCGTCGTGTTGGAACCATGTTGGAAGGGAAAGCAATCGTGGGAGAGACGGATATGCTGCAGAGCATGCAACAGGACGCTCTGGACCTTGCGGCTAAGGCACTTGACACTTTTGATGTCACTCAACCCACTGACATCGCTCGCTTCATTAAGAAGGTAAAACTTTCACTTTGAACTTCACAAAAATTAAACTCTGTTCGATAATTATTTTGTTTTTTGTTTTCTGTTTATGAAATTTAAGCCTATTTCTATTTAAATTTTCTATCATGTACTTCATCTTTCTTACAATGTATCCATTTTTTTTTAAGAAAGTAGGAAAATACTAACCATATTTCAAAAACATAAACAAGTTTTTGGAAGTTATTTTTTTTGTTTATTAAAATATAGGTAAGATGTAGATATCCAAATAAGGGAAAAAGTATAGTTGTTGTAGGCTTAGATTTCATAAACAAAAAACGAAAAACAAAATGGTTATGGCCTAATTTTGCTAATTTTTATTTTTTAGTTGATTGAGATTTTGAATATAAACCCATGTAAGAGAATCCGAAAATAAAAATAAAGAATGAAAATTCCGTTAGTGATTTCATTATCCAATTTCATTTTTTATGGATAGAAACTAAATATTTAGTTAATAGAGTTTGTTGCTAACAAGAACAAAGCTTTATCGTCATCTCGTACAACTTAGTAACCCTGATGCTACAGAGTAATCTTCCCTTAATACTAATGTAAAAAAAAAAGTTTGTTTAGTCGATCATAAGGATTCTAAAATTTAAGATATTTCAGGTGGGCGGTTTGAAAAAAGTTTTTGTTTTTCTATTAATTTTAGAATGGTTAACTATGATTCCTGCACATAATTATATTGTATATAAAAAGTACAAAAATAAATTATCCCTATTTTCTTGAAGAAAATTGTCGATTTATACATTTCTTCAAAAGGTCTATTGTCTAATCATGCACTATCAAACATACCGTCTAATCTTACAAATTTGAATGTCAAAAAAATTAGTAGGAAATTAATTTTTAAAGCCCTGTTTGATAGTTATTTGATTTTTTTTTTTTAGATTTAAATATATTCTTACTCAAATTAACTTCTTATGATGTGTTCCATCTTTTCTATAATATGTCAATTTTTCCTACTAATCAACTTTCAAAAACAAAAATAAACTTTTGAAGCTATTTTTTTTTTCTTTCTAAATTTTGGTTTGGTTTTTATCAAACGAAGCCTAAATATGTGGCTGCGATAGATTGAACTCATCAACTCTTAGCTTCTCAAGCTCCTCGTGACCACTAATCCACTTCAAAAAAAAAAAAACTTCTAACTAAAAACATAAAATTGTTATCAAACAAGATCGATTAAATCCAAGAATAATTGAAGTAGTTAAAGATATGAGTTATTAGTTGATTTGTTTACATATGATTGAAGTAAAAGAAAAGGGTTTGTAAAGCAGGATAGATGGGTATTAATATAGAGATGGGTTGGAAAATGGGGGATGCAGGAATTTGACAGGATCTATGGGCAAGGATGGCAATGCATAGTGGGGACAGATTTTGGGTCATTTGTGACACATTGCTTTGGATGTTTCATCTACTTTTGTGTTGGAAGCCTTGCAGTTTTGCTCTTTAGGGGCTCTGCTGGCCCAGAACACCAAACTGCCCCAACCCAATTTGCTGCTAATTTGGAAACTCTCAAACCCATCATGTAATCATCAACCCAAATCCAATCCTTCCCTTTACTATTCTCTGAACTAAACACTGATCATATATAGTTTGAAGAAACAAAGCTATATATATATATTTTACTG

mRNA sequence

GCAGCCGCCGCCGCCATCGAGCCGTCGTGTTGGAACCATGTTGGAAGGGAAAGCAATCGTGGGAGAGACGGATATGCTGCAGAGCATGCAACAGGACGCTCTGGACCTTGCGGCTAAGGCACTTGACACTTTTGATGTCACTCAACCCACTGACATCGCTCGCTTCATTAAGAAGGAATTTGACAGGATCTATGGGCAAGGATGGCAATGCATAGTGGGGACAGATTTTGGGTCATTTGTGACACATTGCTTTGGATGTTTCATCTACTTTTGTGTTGGAAGCCTTGCAGTTTTGCTCTTTAGGGGCTCTGCTGGCCCAGAACACCAAACTGCCCCAACCCAATTTGCTGCTAATTTGGAAACTCTCAAACCCATCATGTAATCATCAACCCAAATCCAATCCTTCCCTTTACTATTCTCTGAACTAAACACTGATCATATATAGTTTGAAGAAACAAAGCTATATATATATATTTTACTG

Coding sequence (CDS)

ATGTTGGAAGGGAAAGCAATCGTGGGAGAGACGGATATGCTGCAGAGCATGCAACAGGACGCTCTGGACCTTGCGGCTAAGGCACTTGACACTTTTGATGTCACTCAACCCACTGACATCGCTCGCTTCATTAAGAAGGAATTTGACAGGATCTATGGGCAAGGATGGCAATGCATAGTGGGGACAGATTTTGGGTCATTTGTGACACATTGCTTTGGATGTTTCATCTACTTTTGTGTTGGAAGCCTTGCAGTTTTGCTCTTTAGGGGCTCTGCTGGCCCAGAACACCAAACTGCCCCAACCCAATTTGCTGCTAATTTGGAAACTCTCAAACCCATCATGTAA

Protein sequence

MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAGPEHQTAPTQFAANLETLKPIM

Homology

[Close]

BLAST of Sed0021186 vs. NCBI nr
Match: XP_022139644.1 (dynein light chain LC6, flagellar outer arm [Momordica charantia])

HSP 1 Score: 192.2 bits (487), Expect = 2.5e-45
Identity = 95/111 (85.59%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
           MLEGKAI+GETDMLQ MQQDALDLAAKALD+FDVT+ TDIARFIKKEFDRI+G GWQCIV
Sbjct: 1   MLEGKAIIGETDMLQGMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIHGPGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAGPEHQTAPTQFAANLETLK 112
           GTDFGSFVTHCFGCFIYFCVG+LAVLLFRGSAGP+ QT PT   A LE LK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGNLAVLLFRGSAGPQ-QTEPTDQFAALEALK 110

[Close]

BLAST of Sed0021186 vs. NCBI nr
Match: XP_022941140.1 (dynein light chain 2, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 189.1 bits (479), Expect = 2.1e-44
Identity = 93/111 (83.78%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
           MLEGKAIVGETDMLQ+MQQDALDLAAKALD FDVT+ TDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAGPEHQTAPTQFAANLETLK 112
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGS  P+    PT FAA+ ETLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHFAAS-ETLK 110

[Close]

BLAST of Sed0021186 vs. NCBI nr
Match: KAG6607846.1 (hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187.2 bits (474), Expect = 7.9e-44
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
           MLEGKAIVGETDMLQ+MQQDALDLAAKALD FDVT+ TDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAGPEHQTAPTQFAANLETLK 112
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGS  P+    PT F A+ ETLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHFPAS-ETLK 110

[Close]

BLAST of Sed0021186 vs. NCBI nr
Match: XP_038899068.1 (dynein light chain 2, cytoplasmic [Benincasa hispida])

HSP 1 Score: 187.2 bits (474), Expect = 7.9e-44
Identity = 93/113 (82.30%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
           MLEGKAI+GETDMLQ+MQQDAL+LAAKALD+FDVT+ TDIARFIKKEFD+IYG GWQCIV
Sbjct: 1   MLEGKAIIGETDMLQAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDKIYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAG--PEHQTAPTQFAANLETLK 112
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSA    E Q  PTQF+  +ETLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQQPQPTQFSV-METLK 112

[Close]

BLAST of Sed0021186 vs. NCBI nr
Match: XP_022981659.1 (dynein light chain 2, cytoplasmic-like [Cucurbita maxima])

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
           MLEGKAIVGETDMLQ+MQQDALDLAAKALD FDVT+ TDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAGPEHQTAPTQFAANLETLK 112
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGS  P+    PT  AA+ ETLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHLAAS-ETLK 110

[Close]

BLAST of Sed0021186 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.5e-18
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
          M E KA++   DM + MQQDA+D A +AL+ F++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFR 90
          G +FGS+VTH    FIYF +G +AVLLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of Sed0021186 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-17
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
          M + KA++   DM + MQQDA+D A +AL+ +++ +  DIA FIKKEFD+ Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of Sed0021186 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-17
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
          M++ KA++   DM   MQQDA+D A +AL+ +++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Sed0021186 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-17
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
          M + KA++   DM + MQQDA+D A +AL+ +++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of Sed0021186 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-17
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
          M + KA++   DM + MQQDA+D A +A++ +++ +  DIA +IKKEFD+ Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Sed0021186 vs. ExPASy TrEMBL
Match: A0A6J1CDL8 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111010496 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 95/111 (85.59%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
           MLEGKAI+GETDMLQ MQQDALDLAAKALD+FDVT+ TDIARFIKKEFDRI+G GWQCIV
Sbjct: 1   MLEGKAIIGETDMLQGMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIHGPGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAGPEHQTAPTQFAANLETLK 112
           GTDFGSFVTHCFGCFIYFCVG+LAVLLFRGSAGP+ QT PT   A LE LK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGNLAVLLFRGSAGPQ-QTEPTDQFAALEALK 110

[Close]

BLAST of Sed0021186 vs. ExPASy TrEMBL
Match: A0A6J1FSQ1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.0e-44
Identity = 93/111 (83.78%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
           MLEGKAIVGETDMLQ+MQQDALDLAAKALD FDVT+ TDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAGPEHQTAPTQFAANLETLK 112
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGS  P+    PT FAA+ ETLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHFAAS-ETLK 110

[Close]

BLAST of Sed0021186 vs. ExPASy TrEMBL
Match: A0A6J1J2G7 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.0e-44
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
           MLEGKAIVGETDMLQ+MQQDALDLAAKALD FDVT+ TDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAGPEHQTAPTQFAANLETLK 112
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGS  P+    PT  AA+ ETLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHLAAS-ETLK 110

[Close]

BLAST of Sed0021186 vs. ExPASy TrEMBL
Match: A0A059BVC4 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F03359 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.2e-43
Identity = 87/109 (79.82%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
           MLEGKA++GETDMLQ+MQQ+AL LA+KALD+FDVT+PTDIARFIK EFDRIYG GWQCIV
Sbjct: 93  MLEGKAVIGETDMLQAMQQEALHLASKALDSFDVTEPTDIARFIKNEFDRIYGGGWQCIV 152

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAGPEHQTAPTQFAANLET 110
           GTDFGSFVTHC GCFIYFCVGSLA+LLFRGS+GPE +  P QF   L+T
Sbjct: 153 GTDFGSFVTHCSGCFIYFCVGSLAILLFRGSSGPEAE--PNQFMTALDT 199

[Close]

BLAST of Sed0021186 vs. ExPASy TrEMBL
Match: A0A6J1IHC9 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111476954 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 9.4e-43
Identity = 90/111 (81.08%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
           MLEGKA++GETDMLQ+MQQ+ALDLAAKALD+FDVT+PTDIARFIKKEFD +YG GWQCIV
Sbjct: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAGPEHQTAPTQFAANLETLK 112
           GTDFGSFVTHC GCFIYFCVGSLAVLLF+GS+G E +  PTQF+  LET+K
Sbjct: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSE-KPNPTQFSI-LETIK 109

[Close]

BLAST of Sed0021186 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-37
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
          MLEGKA++G+TDM Q+M++DAL LA+KALD FDVT+PT IARFIKKEFDR YG GWQCIV
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAG 94
          GT FGSFVTHC GCFI+F VGSL +LLF+GS G
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGSVG 93

[Close]

BLAST of Sed0021186 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-23
Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
          MLEGKA V ETDM   MQ  A+ +A+++LD FDV     IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGS 92
          GT+FG F TH  G FIYF +G+L  L+F+G+
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]

BLAST of Sed0021186 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-22
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIV 60
          MLEGKA+V ++DM   MQ  A+  A++ALD FDV     IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAGP 95
          G++FG F TH  G FIYF + +L  L+F+G++ P
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGASTP 94

[Close]

BLAST of Sed0021186 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 5   KAIVGETDMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIVGTDF 64
           +A++   DM   MQ++A+++A  A + + V +  DIA  IKKEFD+ +G  W CIVG +F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GSFVTHCFGCFIYFCVGSLAVLLFR 90
           GS+VTH    F+YF +   AVLLF+
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFK 121

[Close]

BLAST of Sed0021186 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 40/83 (48.19%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 12  DMLQSMQQDALDLAAKALDTFDVTQPTDIARFIKKEFDRIYGQGWQCIVGTDFGSFVTHC 71
           DM   MQ  A   A   LD+ +      +A  +KKEFD+ YG  W CIVG+ FGSFVTH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  FGCFIYFCVGSLAVLLFRGSAGP 95
            GCFIYF +  L VLLF+    P
Sbjct: 183 TGCFIYFSMDKLYVLLFKTKVRP 205

The following BLAST results are available for this feature:

BLAST of Sed0021186 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139644.1	2.5e-45	85.59	dynein light chain LC6, flagellar outer arm [Momordica charantia]	[more]
XP_022941140.1	2.1e-44	83.78	dynein light chain 2, cytoplasmic-like [Cucurbita moschata]	[more]
KAG6607846.1	7.9e-44	82.88	hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038899068.1	7.9e-44	82.30	dynein light chain 2, cytoplasmic [Benincasa hispida]	[more]
XP_022981659.1	1.0e-43	82.88	dynein light chain 2, cytoplasmic-like [Cucurbita maxima]	[more]

BLAST of Sed0021186 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	4.5e-18	52.81	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
O96860	1.0e-17	50.56	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
Q22799	1.3e-17	49.44	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q24117	2.3e-17	49.44	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
Q3MHR3	3.8e-17	48.31	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]

BLAST of Sed0021186 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDL8	1.2e-45	85.59	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111010496 PE=3 SV=1	[more]
A0A6J1FSQ1	1.0e-44	83.78	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1	[more]
A0A6J1J2G7	5.0e-44	82.88	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1	[more]
A0A059BVC4	7.2e-43	79.82	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F03359 PE=4 SV...	[more]
A0A6J1IHC9	9.4e-43	81.08	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111476954 PE=3 SV=1	[more]

BLAST of Sed0021186 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27360.1	1.2e-37	76.34	Dynein light chain type 1 family protein	[more]
AT3G16120.1	3.7e-23	57.14	Dynein light chain type 1 family protein	[more]
AT1G52240.2	6.9e-22	53.19	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G15930.1	1.1e-14	44.71	Dynein light chain type 1 family protein	[more]
AT5G20110.1	1.1e-14	48.19	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 9.0E-45 score: 164.7
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 6..89 e-value: 7.5E-32 score: 109.6
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..97
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 1.7E-30 score: 106.8
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	PANTHER	PTHR11886:SF70	DYNEIN LIGHT CHAIN	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021186.1	Sed0021186.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding