Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACTCTCAAATCCCGTCGTCCAGTTCTTCAAACCTGACGACATATTCAAATGTTGTCATTCCTGTCGAATTTATGCCTAAGCCCGAAATCAAAGGATATATTAAGAAAAATACTCCTTACGAAAATTTTGTGGTAGAACCTGAATTCGACAATCCTAAAATTTCTAAGATCGTCAAAAACATTTATCCTCCTGGCTTTTTCTTTATGCCAGAAAACATTCTCAAAACACGAAGGTTTTATGAATTCATTTTAGTAGACACTAAATCTGCTGAAATAGTTCATACACAGGATGTAAACGATCCAAGTAGGATCGCATACTCAAAGTTAAAAATCTTCAAAGTGATGAACCCTACTTGCTGGAATCAAAGTATCTACATGGAGAAATCCTTTTCAAAGACGTTCATCCCCCAAACATTTTCATACCACGATTATGTTACAGCCTGGTATAATGTTTTCTTTTACCAGAACTTCAAGCATTCATGGTTCATTCATTTCGGTCATAATGCCCATAGGATCTCATATCCTTTGTGGTTTAGATCATGGTGGAATATATTTGGTCTAACCTCCAATATTTTTCCCGTTCCCATTCAGGAATCATTCCATTATTTTTCAAAAATTATTTTCAAAAACAGTTTCCCAATTCAAATGAATTTTTCTATGTATTTCCAGGTTCCATGGATCCTTTCTTGGAACTTTGAACTCAGAAACATTTCAAATTCTAAGACTTTAGTTAAAGTCCTAAATATCAAATGGTGGGATAAATTTAATTGTTCTCACCCCAACTTGAAGGGTGTCAAAGGTTGGTTAACCAAATATAGACATCTTCAAGATCTTTCTGGTCAAAAACAGCATGAGTTCTTGAATAGAAAATTCTTTCTCCTCGCGGCTTTGGCACAAATAACGTCTGAAGCTGACTTCTATAAGAAGCTTCAAAGTCTTAAACATGCATTTGTATCTTCTCTCCCTTCAGGAGAAACAGAAGATGTTGATTCTGTATAA
mRNA sequence
ATGGAGAACTCTCAAATCCCGTCGTCCAGTTCTTCAAACCTGACGACATATTCAAATGTTGTCATTCCTGTCGAATTTATGCCTAAGCCCGAAATCAAAGGATATATTAAGAAAAATACTCCTTACGAAAATTTTGTGGTAGAACCTGAATTCGACAATCCTAAAATTTCTAAGATCGTCAAAAACATTTATCCTCCTGGCTTTTTCTTTATGCCAGAAAACATTCTCAAAACACGAAGGTTTTATGAATTCATTTTAGTAGACACTAAATCTGCTGAAATAGTTCATACACAGGATGTAAACGATCCAAGTAGGATCGCATACTCAAAGTTAAAAATCTTCAAAGTGATGAACCCTACTTGCTGGAATCAAAGTATCTACATGGAGAAATCCTTTTCAAAGACGTTCATCCCCCAAACATTTTCATACCACGATTATGTTACAGCCTGGTATAATGTTTTCTTTTACCAGAACTTCAAGCATTCATGGTTCATTCATTTCGGTCATAATGCCCATAGGATCTCATATCCTTTGTGGTTTAGATCATGGTGGAATATATTTGGTCTAACCTCCAATATTTTTCCCGTTCCCATTCAGGAATCATTCCATTATTTTTCAAAAATTATTTTCAAAAACAGTTTCCCAATTCAAATGAATTTTTCTATGTATTTCCAGGTTCCATGGATCCTTTCTTGGAACTTTGAACTCAGAAACATTTCAAATTCTAAGACTTTAGTTAAAGTCCTAAATATCAAATGGTGGGATAAATTTAATTGTTCTCACCCCAACTTGAAGGGTGTCAAAGGTTGGTTAACCAAATATAGACATCTTCAAGATCTTTCTGGTCAAAAACAGCATGAGTTCTTGAATAGAAAATTCTTTCTCCTCGCGGCTTTGGCACAAATAACGTCTGAAGCTGACTTCTATAAGAAGCTTCAAAGTCTTAAACATGCATTTGTATCTTCTCTCCCTTCAGGAGAAACAGAAGATGTTGATTCTGTATAA
Coding sequence (CDS)
ATGGAGAACTCTCAAATCCCGTCGTCCAGTTCTTCAAACCTGACGACATATTCAAATGTTGTCATTCCTGTCGAATTTATGCCTAAGCCCGAAATCAAAGGATATATTAAGAAAAATACTCCTTACGAAAATTTTGTGGTAGAACCTGAATTCGACAATCCTAAAATTTCTAAGATCGTCAAAAACATTTATCCTCCTGGCTTTTTCTTTATGCCAGAAAACATTCTCAAAACACGAAGGTTTTATGAATTCATTTTAGTAGACACTAAATCTGCTGAAATAGTTCATACACAGGATGTAAACGATCCAAGTAGGATCGCATACTCAAAGTTAAAAATCTTCAAAGTGATGAACCCTACTTGCTGGAATCAAAGTATCTACATGGAGAAATCCTTTTCAAAGACGTTCATCCCCCAAACATTTTCATACCACGATTATGTTACAGCCTGGTATAATGTTTTCTTTTACCAGAACTTCAAGCATTCATGGTTCATTCATTTCGGTCATAATGCCCATAGGATCTCATATCCTTTGTGGTTTAGATCATGGTGGAATATATTTGGTCTAACCTCCAATATTTTTCCCGTTCCCATTCAGGAATCATTCCATTATTTTTCAAAAATTATTTTCAAAAACAGTTTCCCAATTCAAATGAATTTTTCTATGTATTTCCAGGTTCCATGGATCCTTTCTTGGAACTTTGAACTCAGAAACATTTCAAATTCTAAGACTTTAGTTAAAGTCCTAAATATCAAATGGTGGGATAAATTTAATTGTTCTCACCCCAACTTGAAGGGTGTCAAAGGTTGGTTAACCAAATATAGACATCTTCAAGATCTTTCTGGTCAAAAACAGCATGAGTTCTTGAATAGAAAATTCTTTCTCCTCGCGGCTTTGGCACAAATAACGTCTGAAGCTGACTTCTATAAGAAGCTTCAAAGTCTTAAACATGCATTTGTATCTTCTCTCCCTTCAGGAGAAACAGAAGATGTTGATTCTGTATAA
Protein sequence
MENSQIPSSSSSNLTTYSNVVIPVEFMPKPEIKGYIKKNTPYENFVVEPEFDNPKISKIVKNIYPPGFFFMPENILKTRRFYEFILVDTKSAEIVHTQDVNDPSRIAYSKLKIFKVMNPTCWNQSIYMEKSFSKTFIPQTFSYHDYVTAWYNVFFYQNFKHSWFIHFGHNAHRISYPLWFRSWWNIFGLTSNIFPVPIQESFHYFSKIIFKNSFPIQMNFSMYFQVPWILSWNFELRNISNSKTLVKVLNIKWWDKFNCSHPNLKGVKGWLTKYRHLQDLSGQKQHEFLNRKFFLLAALAQITSEADFYKKLQSLKHAFVSSLPSGETEDVDSV
Homology
BLAST of Sed0021173 vs. NCBI nr
Match:
KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 291.2 bits (744), Expect = 1.1e-74
Identity = 136/308 (44.16%), Postives = 197/308 (63.96%), Query Frame = 0
Query: 7 PSSSSS------NLTTYSNVVIPVEFMPKPEIKGYIKKNTPYENFVVEPEFDNPKISKIV 66
P++SSS N ++YS +V P F P+P I GY K T + +EPEFD P + ++
Sbjct: 60 PAASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVD-LTIEPEFDGPSVQEVC 119
Query: 67 KNIYPPGFFFMPENILKTRRFYEFILVDTKSAEIVHTQDVNDPSRIAYSKLKIFKVMNPT 126
I+P GF F+PE++ KTR FYE+ILVD+KSAEI H D NDPS+I YSKL+IF+V+ P+
Sbjct: 120 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 179
Query: 127 CWNQSIYMEKSFSKTFIPQTFSYHDYVTAWYNVFFYQNFKHSWFIHFGHNAHRISYPLWF 186
W Q +++ + FS F P +++Y DY AWY VF+ Q + HSWF+ F A+++ +P WF
Sbjct: 180 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWF 239
Query: 187 RSWWNIFGLTSNIFPVPIQESFHYFSKIIFKNSFPIQMNFSMYFQVPWILSWNFELRNIS 246
++WW FGL+ IFPV +Q S+H F + I+ + F++YFQ+PWI WNF+L
Sbjct: 240 QNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 299
Query: 247 NSKTLVKVLNIKWWDKFNCSHPNLKGVKGWLTKYRHLQDLSGQKQHEFLNRKFFLLAALA 306
N K L K L IKWW+KFN SH + +K W HLQD++ Q+ FL K +++ LA
Sbjct: 300 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 359
Query: 307 QITSEADF 309
+++ +F
Sbjct: 360 GASTQQEF 366
BLAST of Sed0021173 vs. NCBI nr
Match:
KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 291.2 bits (744), Expect = 1.1e-74
Identity = 136/308 (44.16%), Postives = 197/308 (63.96%), Query Frame = 0
Query: 7 PSSSSS------NLTTYSNVVIPVEFMPKPEIKGYIKKNTPYENFVVEPEFDNPKISKIV 66
P++SSS N ++YS +V P F P+P I GY K T + +EPEFD P + ++
Sbjct: 60 PAASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVD-LTIEPEFDGPSVQEVC 119
Query: 67 KNIYPPGFFFMPENILKTRRFYEFILVDTKSAEIVHTQDVNDPSRIAYSKLKIFKVMNPT 126
I+P GF F+PE++ KTR FYE+ILVD+KSAEI H D NDPS+I YSKL+IF+V+ P+
Sbjct: 120 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 179
Query: 127 CWNQSIYMEKSFSKTFIPQTFSYHDYVTAWYNVFFYQNFKHSWFIHFGHNAHRISYPLWF 186
W Q +++ + FS F P +++Y DY AWY VF+ Q + HSWF+ F A+++ +P WF
Sbjct: 180 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWF 239
Query: 187 RSWWNIFGLTSNIFPVPIQESFHYFSKIIFKNSFPIQMNFSMYFQVPWILSWNFELRNIS 246
++WW FGL+ IFPV +Q S+H F + I+ + F++YFQ+PWI WNF+L
Sbjct: 240 QNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 299
Query: 247 NSKTLVKVLNIKWWDKFNCSHPNLKGVKGWLTKYRHLQDLSGQKQHEFLNRKFFLLAALA 306
N K L K L IKWW+KFN SH + +K W HLQD++ Q+ FL K +++ LA
Sbjct: 300 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 359
Query: 307 QITSEADF 309
+++ +F
Sbjct: 360 GASTQQEF 366
BLAST of Sed0021173 vs. NCBI nr
Match:
KAA0068172.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 289.7 bits (740), Expect = 3.3e-74
Identity = 135/308 (43.83%), Postives = 197/308 (63.96%), Query Frame = 0
Query: 7 PSSSSS------NLTTYSNVVIPVEFMPKPEIKGYIKKNTPYENFVVEPEFDNPKISKIV 66
P++SSS N ++YS +V P F P+P I GY K T + +EP+FD P + ++
Sbjct: 60 PAASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVD-LTIEPKFDGPSVQEVC 119
Query: 67 KNIYPPGFFFMPENILKTRRFYEFILVDTKSAEIVHTQDVNDPSRIAYSKLKIFKVMNPT 126
I+P GF F+PE++ KTR FYE+ILVD+KSAEI H D NDPS+I YSKL+IF+V+ P+
Sbjct: 120 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 179
Query: 127 CWNQSIYMEKSFSKTFIPQTFSYHDYVTAWYNVFFYQNFKHSWFIHFGHNAHRISYPLWF 186
W Q +++ + FS F P +++Y DY AWY VF+ Q + HSWF+ F A+++ +P WF
Sbjct: 180 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWF 239
Query: 187 RSWWNIFGLTSNIFPVPIQESFHYFSKIIFKNSFPIQMNFSMYFQVPWILSWNFELRNIS 246
++WW FGL+ IFPV +Q S+H F + I+ + F++YFQ+PWI WNF+L
Sbjct: 240 QNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 299
Query: 247 NSKTLVKVLNIKWWDKFNCSHPNLKGVKGWLTKYRHLQDLSGQKQHEFLNRKFFLLAALA 306
N K L K L IKWW+KFN SH + +K W HLQD++ Q+ FL K +++ LA
Sbjct: 300 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 359
Query: 307 QITSEADF 309
+++ +F
Sbjct: 360 GASTQQEF 366
BLAST of Sed0021173 vs. NCBI nr
Match:
KAA0032916.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK28084.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 288.9 bits (738), Expect = 5.7e-74
Identity = 136/308 (44.16%), Postives = 195/308 (63.31%), Query Frame = 0
Query: 7 PSSSSS------NLTTYSNVVIPVEFMPKPEIKGYIKKNTPYENFVVEPEFDNPKISKIV 66
P +SSS N ++YS +V P F P+P I GY NT + +EPEFD P + ++
Sbjct: 60 PDASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYF-TNTTMVDLTIEPEFDGPSVQEVC 119
Query: 67 KNIYPPGFFFMPENILKTRRFYEFILVDTKSAEIVHTQDVNDPSRIAYSKLKIFKVMNPT 126
I+P GF F+PE++ KTR FYE+ILVD+KSAEI H D NDPS+I YSKL+IF+V+ P+
Sbjct: 120 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 179
Query: 127 CWNQSIYMEKSFSKTFIPQTFSYHDYVTAWYNVFFYQNFKHSWFIHFGHNAHRISYPLWF 186
W Q +++ + FS F P +++Y DY AWY VF+ + HSWF+ F A+++ +P WF
Sbjct: 180 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPNWF 239
Query: 187 RSWWNIFGLTSNIFPVPIQESFHYFSKIIFKNSFPIQMNFSMYFQVPWILSWNFELRNIS 246
++WW FGL+ IFPV IQ S+H F + I+ + F++YFQ+PWI WNF+L
Sbjct: 240 QNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 299
Query: 247 NSKTLVKVLNIKWWDKFNCSHPNLKGVKGWLTKYRHLQDLSGQKQHEFLNRKFFLLAALA 306
N K L K L IKWW+KFN SH + +K W HLQD++ Q+ FL K +++ LA
Sbjct: 300 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTTQEDEAFLLTKNAVMSTLA 359
Query: 307 QITSEADF 309
+++ +F
Sbjct: 360 GASTQQEF 366
BLAST of Sed0021173 vs. NCBI nr
Match:
TYK28077.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 288.5 bits (737), Expect = 7.4e-74
Identity = 136/308 (44.16%), Postives = 195/308 (63.31%), Query Frame = 0
Query: 7 PSSSSS------NLTTYSNVVIPVEFMPKPEIKGYIKKNTPYENFVVEPEFDNPKISKIV 66
P +SSS N ++YS +V P F P+P I GY K T + +EPEFD P + ++
Sbjct: 60 PDASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVD-LTIEPEFDGPSVQEVC 119
Query: 67 KNIYPPGFFFMPENILKTRRFYEFILVDTKSAEIVHTQDVNDPSRIAYSKLKIFKVMNPT 126
I+P GF F+PE++ KTR FYE+ILVD+KSAEI H D NDPS+I YSKL+IF+V+ P+
Sbjct: 120 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 179
Query: 127 CWNQSIYMEKSFSKTFIPQTFSYHDYVTAWYNVFFYQNFKHSWFIHFGHNAHRISYPLWF 186
W Q +++ + FS F P +++Y DY AWY VF+ + HSWF+ F A+++ +P WF
Sbjct: 180 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPNWF 239
Query: 187 RSWWNIFGLTSNIFPVPIQESFHYFSKIIFKNSFPIQMNFSMYFQVPWILSWNFELRNIS 246
++WW FGL+ IFPV IQ S+H F + I+ + F++YFQ+PWI WNF+L
Sbjct: 240 QNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 299
Query: 247 NSKTLVKVLNIKWWDKFNCSHPNLKGVKGWLTKYRHLQDLSGQKQHEFLNRKFFLLAALA 306
N K L K L IKWW+KFN SH + +K W HLQD++ Q+ FL K +++ LA
Sbjct: 300 NFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 359
Query: 307 QITSEADF 309
+++ +F
Sbjct: 360 GASTQQEF 366
BLAST of Sed0021173 vs. ExPASy TrEMBL
Match:
A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)
HSP 1 Score: 291.2 bits (744), Expect = 5.5e-75
Identity = 136/308 (44.16%), Postives = 197/308 (63.96%), Query Frame = 0
Query: 7 PSSSSS------NLTTYSNVVIPVEFMPKPEIKGYIKKNTPYENFVVEPEFDNPKISKIV 66
P++SSS N ++YS +V P F P+P I GY K T + +EPEFD P + ++
Sbjct: 60 PAASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVD-LTIEPEFDGPSVQEVC 119
Query: 67 KNIYPPGFFFMPENILKTRRFYEFILVDTKSAEIVHTQDVNDPSRIAYSKLKIFKVMNPT 126
I+P GF F+PE++ KTR FYE+ILVD+KSAEI H D NDPS+I YSKL+IF+V+ P+
Sbjct: 120 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 179
Query: 127 CWNQSIYMEKSFSKTFIPQTFSYHDYVTAWYNVFFYQNFKHSWFIHFGHNAHRISYPLWF 186
W Q +++ + FS F P +++Y DY AWY VF+ Q + HSWF+ F A+++ +P WF
Sbjct: 180 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWF 239
Query: 187 RSWWNIFGLTSNIFPVPIQESFHYFSKIIFKNSFPIQMNFSMYFQVPWILSWNFELRNIS 246
++WW FGL+ IFPV +Q S+H F + I+ + F++YFQ+PWI WNF+L
Sbjct: 240 QNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 299
Query: 247 NSKTLVKVLNIKWWDKFNCSHPNLKGVKGWLTKYRHLQDLSGQKQHEFLNRKFFLLAALA 306
N K L K L IKWW+KFN SH + +K W HLQD++ Q+ FL K +++ LA
Sbjct: 300 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 359
Query: 307 QITSEADF 309
+++ +F
Sbjct: 360 GASTQQEF 366
BLAST of Sed0021173 vs. ExPASy TrEMBL
Match:
A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)
HSP 1 Score: 291.2 bits (744), Expect = 5.5e-75
Identity = 136/308 (44.16%), Postives = 197/308 (63.96%), Query Frame = 0
Query: 7 PSSSSS------NLTTYSNVVIPVEFMPKPEIKGYIKKNTPYENFVVEPEFDNPKISKIV 66
P++SSS N ++YS +V P F P+P I GY K T + +EPEFD P + ++
Sbjct: 60 PAASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVD-LTIEPEFDGPSVQEVC 119
Query: 67 KNIYPPGFFFMPENILKTRRFYEFILVDTKSAEIVHTQDVNDPSRIAYSKLKIFKVMNPT 126
I+P GF F+PE++ KTR FYE+ILVD+KSAEI H D NDPS+I YSKL+IF+V+ P+
Sbjct: 120 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 179
Query: 127 CWNQSIYMEKSFSKTFIPQTFSYHDYVTAWYNVFFYQNFKHSWFIHFGHNAHRISYPLWF 186
W Q +++ + FS F P +++Y DY AWY VF+ Q + HSWF+ F A+++ +P WF
Sbjct: 180 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWF 239
Query: 187 RSWWNIFGLTSNIFPVPIQESFHYFSKIIFKNSFPIQMNFSMYFQVPWILSWNFELRNIS 246
++WW FGL+ IFPV +Q S+H F + I+ + F++YFQ+PWI WNF+L
Sbjct: 240 QNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 299
Query: 247 NSKTLVKVLNIKWWDKFNCSHPNLKGVKGWLTKYRHLQDLSGQKQHEFLNRKFFLLAALA 306
N K L K L IKWW+KFN SH + +K W HLQD++ Q+ FL K +++ LA
Sbjct: 300 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 359
Query: 307 QITSEADF 309
+++ +F
Sbjct: 360 GASTQQEF 366
BLAST of Sed0021173 vs. ExPASy TrEMBL
Match:
A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)
HSP 1 Score: 289.7 bits (740), Expect = 1.6e-74
Identity = 135/308 (43.83%), Postives = 197/308 (63.96%), Query Frame = 0
Query: 7 PSSSSS------NLTTYSNVVIPVEFMPKPEIKGYIKKNTPYENFVVEPEFDNPKISKIV 66
P++SSS N ++YS +V P F P+P I GY K T + +EP+FD P + ++
Sbjct: 60 PAASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVD-LTIEPKFDGPSVQEVC 119
Query: 67 KNIYPPGFFFMPENILKTRRFYEFILVDTKSAEIVHTQDVNDPSRIAYSKLKIFKVMNPT 126
I+P GF F+PE++ KTR FYE+ILVD+KSAEI H D NDPS+I YSKL+IF+V+ P+
Sbjct: 120 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 179
Query: 127 CWNQSIYMEKSFSKTFIPQTFSYHDYVTAWYNVFFYQNFKHSWFIHFGHNAHRISYPLWF 186
W Q +++ + FS F P +++Y DY AWY VF+ Q + HSWF+ F A+++ +P WF
Sbjct: 180 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWF 239
Query: 187 RSWWNIFGLTSNIFPVPIQESFHYFSKIIFKNSFPIQMNFSMYFQVPWILSWNFELRNIS 246
++WW FGL+ IFPV +Q S+H F + I+ + F++YFQ+PWI WNF+L
Sbjct: 240 QNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 299
Query: 247 NSKTLVKVLNIKWWDKFNCSHPNLKGVKGWLTKYRHLQDLSGQKQHEFLNRKFFLLAALA 306
N K L K L IKWW+KFN SH + +K W HLQD++ Q+ FL K +++ LA
Sbjct: 300 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 359
Query: 307 QITSEADF 309
+++ +F
Sbjct: 360 GASTQQEF 366
BLAST of Sed0021173 vs. ExPASy TrEMBL
Match:
A0A5A7SS94 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003480 PE=4 SV=1)
HSP 1 Score: 288.9 bits (738), Expect = 2.7e-74
Identity = 136/308 (44.16%), Postives = 195/308 (63.31%), Query Frame = 0
Query: 7 PSSSSS------NLTTYSNVVIPVEFMPKPEIKGYIKKNTPYENFVVEPEFDNPKISKIV 66
P +SSS N ++YS +V P F P+P I GY NT + +EPEFD P + ++
Sbjct: 60 PDASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYF-TNTTMVDLTIEPEFDGPSVQEVC 119
Query: 67 KNIYPPGFFFMPENILKTRRFYEFILVDTKSAEIVHTQDVNDPSRIAYSKLKIFKVMNPT 126
I+P GF F+PE++ KTR FYE+ILVD+KSAEI H D NDPS+I YSKL+IF+V+ P+
Sbjct: 120 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 179
Query: 127 CWNQSIYMEKSFSKTFIPQTFSYHDYVTAWYNVFFYQNFKHSWFIHFGHNAHRISYPLWF 186
W Q +++ + FS F P +++Y DY AWY VF+ + HSWF+ F A+++ +P WF
Sbjct: 180 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPNWF 239
Query: 187 RSWWNIFGLTSNIFPVPIQESFHYFSKIIFKNSFPIQMNFSMYFQVPWILSWNFELRNIS 246
++WW FGL+ IFPV IQ S+H F + I+ + F++YFQ+PWI WNF+L
Sbjct: 240 QNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 299
Query: 247 NSKTLVKVLNIKWWDKFNCSHPNLKGVKGWLTKYRHLQDLSGQKQHEFLNRKFFLLAALA 306
N K L K L IKWW+KFN SH + +K W HLQD++ Q+ FL K +++ LA
Sbjct: 300 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTTQEDEAFLLTKNAVMSTLA 359
Query: 307 QITSEADF 309
+++ +F
Sbjct: 360 GASTQQEF 366
BLAST of Sed0021173 vs. ExPASy TrEMBL
Match:
A0A5D3DW87 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 PE=4 SV=1)
HSP 1 Score: 288.5 bits (737), Expect = 3.6e-74
Identity = 136/308 (44.16%), Postives = 195/308 (63.31%), Query Frame = 0
Query: 7 PSSSSS------NLTTYSNVVIPVEFMPKPEIKGYIKKNTPYENFVVEPEFDNPKISKIV 66
P +SSS N ++YS +V P F P+P I GY K T + +EPEFD P + ++
Sbjct: 60 PDASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVD-LTIEPEFDGPSVQEVC 119
Query: 67 KNIYPPGFFFMPENILKTRRFYEFILVDTKSAEIVHTQDVNDPSRIAYSKLKIFKVMNPT 126
I+P GF F+PE++ KTR FYE+ILVD+KSAEI H D NDPS+I YSKL+IF+V+ P+
Sbjct: 120 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 179
Query: 127 CWNQSIYMEKSFSKTFIPQTFSYHDYVTAWYNVFFYQNFKHSWFIHFGHNAHRISYPLWF 186
W Q +++ + FS F P +++Y DY AWY VF+ + HSWF+ F A+++ +P WF
Sbjct: 180 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPNWF 239
Query: 187 RSWWNIFGLTSNIFPVPIQESFHYFSKIIFKNSFPIQMNFSMYFQVPWILSWNFELRNIS 246
++WW FGL+ IFPV IQ S+H F + I+ + F++YFQ+PWI WNF+L
Sbjct: 240 QNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 299
Query: 247 NSKTLVKVLNIKWWDKFNCSHPNLKGVKGWLTKYRHLQDLSGQKQHEFLNRKFFLLAALA 306
N K L K L IKWW+KFN SH + +K W HLQD++ Q+ FL K +++ LA
Sbjct: 300 NFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 359
Query: 307 QITSEADF 309
+++ +F
Sbjct: 360 GASTQQEF 366
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0063832.1 | 1.1e-74 | 44.16 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
| KAA0056777.1 | 1.1e-74 | 44.16 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran... | [more] |
| KAA0068172.1 | 3.3e-74 | 43.83 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
| KAA0032916.1 | 5.7e-74 | 44.16 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK28084.1 Retrotransp... | [more] |
| TYK28077.1 | 7.4e-74 | 44.16 | polyprotein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UVN1 | 5.5e-75 | 44.16 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
| A0A5A7V6D1 | 5.5e-75 | 44.16 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
| A0A5A7VIK9 | 1.6e-74 | 43.83 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
| A0A5A7SS94 | 2.7e-74 | 44.16 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
| A0A5D3DW87 | 3.6e-74 | 44.16 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 P... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
