Sed0021124 (gene) Chayote v1

Overview
NameSed0021124
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG08: 27257153 .. 27262853 (-)
RNA-Seq ExpressionSed0021124
SyntenySed0021124
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGGAACAATCTTTATTTTTTTGCAAGGGAACAAAATTTTAAAAGGCTAACCAAATAATAACATTTTTTTAAAACGTATTTAAATCTCCCATTGGCTTTAGCTTAAATAGAAAATCCCCAACTATTAATTAGATTCTCTCCCATTTGACTCATACACCCAAAGGTGAGAGAAACAAGGAGAGGGAGGGAGAGACAAATATATTTAAAAAATGGTTAGAAAAAGCTGTAAGATATTAGTTTATATATTTCATCACATCAAACAAATCTGAAAATGGAGATTTGGTTATAGTTTAAGAGTAGTAGCATCTTCAACCCCCCATTTTTACAGCCTATAATTTCTCCCAACATTTGGGTTTCAACAAAAAAAAAAACTACAGAAACAGAGAACTCATTTTTGTTCTTCTAATCACTCACTCATTCTTAAATCAGAAAAAGACCCATCTCTCAAAATCTTCATCTAAAAAATGGGTCGATCTTCTTTTCTGTCAATTCTTCTTGTTTTTCTCTCCATCTCTCTCTGTTTCACTAATGGTACTAATTTAATTTCTCTCTTCTAATTTCTTGTTTTAATGCTTTAATTTGATGGGGTTTTTTTTTAATTTGGTGTAAATTTCAATTAGGACTTGGAAGAAAGATGGGCCTGGTGGAGACTGTTGATACACACCATGGCTACACAGCTCAAGTAAAGGTAAAACAATATACTACTTTTCTCTGTTTGTTGTGTTGTATTTTTGTTCTTTGGGGGATTTGTTGAGGATCCTTTCATTTTGGGATGAAATTTGATTGTATCCAATAGATTTTAGTTTTTATTTAATTTTGCAGGAAAATGGAGAAAATTGGAAGGTGATGATGATGATGGAGACAATGGATTATTCAGATCCAGAGCCAAACACCAATATAAGAGGTGGCTATGTTTCTCCACCTCCTCCTCCCCCTCCTCCCATTAATGGATGATTTCTTTTTCTTTTTTTTTTTGTGGGGAATGTTTTTGTTCATAGTATTTGTTTGGGGAAATTGAAGAAAGAAGCAGTTTCGTTGGTGTTAAATTACCTATTTTAGTTTTGTTTTTGTACAGTGATTTAGTTTTGTTTTTTTTTTAGTTGCCGTCATTTGAGTAATTACTAGATCGTACATATGGCTCC

mRNA sequence

AAAAGGAACAATCTTTATTTTTTTGCAAGGGAACAAAATTTTAAAAGGCTAACCAAATAATAACATTTTTTTAAAACGTATTTAAATCTCCCATTGGCTTTAGCTTAAATAGAAAATCCCCAACTATTAATTAGATTCTCTCCCATTTGACTCATACACCCAAAGGTGAGAGAAACAAGGAGAGGGAGGGAGAGACAAATATATTTAAAAAATGGTTAGAAAAAGCTGTAAGATATTAGTTTATATATTTCATCACATCAAACAAATCTGAAAATGGAGATTTGGTTATAGTTTAAGAGTAGTAGCATCTTCAACCCCCCATTTTTACAGCCTATAATTTCTCCCAACATTTGGGTTTCAACAAAAAAAAAAACTACAGAAACAGAGAACTCATTTTTGTTCTTCTAATCACTCACTCATTCTTAAATCAGAAAAAGACCCATCTCTCAAAATCTTCATCTAAAAAATGGGTCGATCTTCTTTTCTGTCAATTCTTCTTGTTTTTCTCTCCATCTCTCTCTGTTTCACTAATGGACTTGGAAGAAAGATGGGCCTGGTGGAGACTGTTGATACACACCATGGCTACACAGCTCAAGTAAAGGAAAATGGAGAAAATTGGAAGGTGATGATGATGATGGAGACAATGGATTATTCAGATCCAGAGCCAAACACCAATATAAGAGGTGGCTATGTTTCTCCACCTCCTCCTCCCCCTCCTCCCATTAATGGATGATTTCTTTTTCTTTTTTTTTTTGTGGGGAATGTTTTTGTTCATAGTATTTGTTTGGGGAAATTGAAGAAAGAAGCAGTTTCGTTGGTGTTAAATTACCTATTTTAGTTTTGTTTTTGTACAGTGATTTAGTTTTGTTTTTTTTTTAGTTGCCGTCATTTGAGTAATTACTAGATCGTACATATGGCTCC

Coding sequence (CDS)

ATGGGTCGATCTTCTTTTCTGTCAATTCTTCTTGTTTTTCTCTCCATCTCTCTCTGTTTCACTAATGGACTTGGAAGAAAGATGGGCCTGGTGGAGACTGTTGATACACACCATGGCTACACAGCTCAAGTAAAGGAAAATGGAGAAAATTGGAAGGTGATGATGATGATGGAGACAATGGATTATTCAGATCCAGAGCCAAACACCAATATAAGAGGTGGCTATGTTTCTCCACCTCCTCCTCCCCCTCCTCCCATTAATGGATGA

Protein sequence

MGRSSFLSILLVFLSISLCFTNGLGRKMGLVETVDTHHGYTAQVKENGENWKVMMMMETMDYSDPEPNTNIRGGYVSPPPPPPPPING
Homology
BLAST of Sed0021124 vs. NCBI nr
Match: KAG6588364.1 (hypothetical protein SDJN03_16929, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022213.1 hypothetical protein SDJN02_15943 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 9.5e-21
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 0

Query: 1  MGRSSFLSILLVFLSISLCFTNGLGRKMGLVETVDTHHGYTAQVKENGENW-KVMMMMET 60
          MGRS FLSILL+ L I+ CFTNG G KM ++E VDTHHG + ++KE+GE   + MMMMET
Sbjct: 1  MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSSVELKESGEEMRRRMMMMET 60

Query: 61 MDYSDPEPNTNIR-GGYVSPPPP 82
          MDYSDPEPNTN++ GGYVSPPPP
Sbjct: 61 MDYSDPEPNTNVKGGGYVSPPPP 83

BLAST of Sed0021124 vs. NCBI nr
Match: XP_011652234.1 (uncharacterized protein LOC105435001 [Cucumis sativus] >KGN59558.1 hypothetical protein Csa_002017 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 0

Query: 1  MGRSSFLSILLVF-LSISLCFTNGLGRKMGL-VETVDTHHGYTAQVKENGENWKVMMMME 60
          MGRSSFLSILL+    I+LCF+NG GR + + VE +D+HH     ++E+G  W+ MM ME
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWR-MMKME 60

Query: 61 TMDYSDPEPNTNIRGGYVSPPPPP 83
          TMDY+DPEPNTN++GGYVSPPPPP
Sbjct: 61 TMDYADPEPNTNVKGGYVSPPPPP 83

BLAST of Sed0021124 vs. NCBI nr
Match: XP_041004488.1 (uncharacterized protein LOC121249761 isoform X2 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1  MGRSSFLSILLVFLSISLCFTNGLGRKMGLVETVDTHHGYTAQVKENGENWKVMMMMETM 60
          MGRS FL+ILLV   + LCF++G GRK  ++ETV+ H   T +V+E+    K  MM+E M
Sbjct: 1  MGRSCFLNILLVSSLLVLCFSHGFGRK--VMETVE-HEDSTFRVEESTVG-KSRMMIEVM 60

Query: 61 DYSDPEPNTNIRGGYVSPPPP 82
          DYSDP PNTN R GY+  PPP
Sbjct: 61 DYSDPGPNTNPRSGYIFSPPP 77

BLAST of Sed0021124 vs. NCBI nr
Match: KAG6659311.1 (hypothetical protein CIPAW_03G025300 [Carya illinoinensis] >KAG6719710.1 hypothetical protein I3842_03G020400 [Carya illinoinensis])

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 1  MGRSSFLSILLVFLSISLCFTNGLGRKMGLVETVDTHHGYTAQVKENGENWKVMMMMETM 60
          MGRS FLSILL    + LCF++G GRK  ++ETV+ H   T +V+E+    K   M+E M
Sbjct: 1  MGRSCFLSILLASSLLVLCFSHGFGRK--VMETVE-HEDSTFRVEESTVG-KSRRMIEVM 60

Query: 61 DYSDPEPNTNIRGGYVSPPPP 82
          DYSDP PNTN + GY+  PPP
Sbjct: 61 DYSDPGPNTNPKSGYIFSPPP 77

BLAST of Sed0021124 vs. NCBI nr
Match: XP_041004487.1 (uncharacterized protein LOC121249761 isoform X1 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0

Query: 1  MGRSSFLSILLVFLSISLCFTN-GLGRKMGLVETVDTHHGYTAQVKENGENWKVMMMMET 60
          MGRS FL+ILLV   + LCF++ G GRK  ++ETV+ H   T +V+E+    K  MM+E 
Sbjct: 1  MGRSCFLNILLVSSLLVLCFSHEGFGRK--VMETVE-HEDSTFRVEESTVG-KSRMMIEV 60

Query: 61 MDYSDPEPNTNIRGGYVSPPPP 82
          MDYSDP PNTN R GY+  PPP
Sbjct: 61 MDYSDPGPNTNPRSGYIFSPPP 78

BLAST of Sed0021124 vs. ExPASy TrEMBL
Match: A0A0A0LCS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 0

Query: 1  MGRSSFLSILLVF-LSISLCFTNGLGRKMGL-VETVDTHHGYTAQVKENGENWKVMMMME 60
          MGRSSFLSILL+    I+LCF+NG GR + + VE +D+HH     ++E+G  W+ MM ME
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWR-MMKME 60

Query: 61 TMDYSDPEPNTNIRGGYVSPPPPP 83
          TMDY+DPEPNTN++GGYVSPPPPP
Sbjct: 61 TMDYADPEPNTNVKGGYVSPPPPP 83

BLAST of Sed0021124 vs. ExPASy TrEMBL
Match: A0A2P5CWE3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_116840 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.9e-08
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 1  MGRSSFLSILLVFLSISLCFTNGLGRKMGLVETVDTH---HGYTAQVKENGENWKVMMMM 60
          MGR  F +ILLV L + L F++G GR+   ++TV+ H   H  + +VKENG   K   M+
Sbjct: 1  MGRRCFPTILLVSLFMLLFFSHGFGRRS--LKTVEGHQEEHYSSVEVKENG-GVKSREMI 60

Query: 61 ETMDYSDPEPNTNIRGGYVSPPPP 82
          E  DYS+PEPNTN R GY+  PPP
Sbjct: 61 EVTDYSEPEPNTNPRAGYIFTPPP 81

BLAST of Sed0021124 vs. ExPASy TrEMBL
Match: A0A540L840 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_031846 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 41/82 (50.00%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 1  MGRSSFLSILLVFLSISLCFTNGLGRKMGLVETVDTHHGYTAQVKENGENWKVMMMMET- 60
          MGR  FL  L+V   ++LCF++GLGRK  LVET +  HG  + V  + EN      M T 
Sbjct: 1  MGRHWFLRFLIVSCLLALCFSHGLGRK--LVETAE--HGDDSSVLVSRENHGKSRKMNTM 60

Query: 61 MDYSDPEPNTNIRGGYVSPPPP 82
          MDY+DPEPN N R GY+  PPP
Sbjct: 61 MDYADPEPNVNPRTGYIFTPPP 78

BLAST of Sed0021124 vs. ExPASy TrEMBL
Match: A0A498HG62 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037098 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 1  MGRSSFLSILLVFLSISLCFTNGLGRKMGLVETVDTHHGYTAQVKENGEN-WKVMMMMET 60
          MGR  FL  L+V   ++LCF++G GRK  LVET +  HG  + V  + EN  K   M+  
Sbjct: 1  MGRHWFLRFLIVSCLLALCFSHGFGRK--LVETAE--HGEDSSVLVSRENHGKSRKMITM 60

Query: 61 MDYSDPEPNTNIRGGYVSPPPP 82
          MDY+DPEPN N R GY+  PPP
Sbjct: 61 MDYADPEPNVNPRTGYIFTPPP 78

BLAST of Sed0021124 vs. ExPASy TrEMBL
Match: A0A540M3Y6 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_021117 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.9e-07
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 1  MGRSSFLSILLVFLSISLCFTNGLGRKMGLVETVDTHHGYTAQVKENGENWKVMMMMET- 60
          MGR  FL  L+V   ++LCF++G GRK  LVET +  HG  + V  + EN      M T 
Sbjct: 1  MGRHWFLRFLIVSCLLALCFSHGFGRK--LVETAE--HGDDSSVLVSRENHGKSRKMNTM 60

Query: 61 MDYSDPEPNTNIRGGYVSPPPP 82
          MDY+DPEPN N R GY+  PPP
Sbjct: 61 MDYADPEPNVNPRTGYIFTPPP 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6588364.19.5e-2168.67hypothetical protein SDJN03_16929, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_011652234.12.6e-1861.90uncharacterized protein LOC105435001 [Cucumis sativus] >KGN59558.1 hypothetical ... [more]
XP_041004488.11.3e-0954.32uncharacterized protein LOC121249761 isoform X2 [Juglans microcarpa x Juglans re... [more]
KAG6659311.11.9e-0851.85hypothetical protein CIPAW_03G025300 [Carya illinoinensis] >KAG6719710.1 hypothe... [more]
XP_041004487.13.2e-0853.66uncharacterized protein LOC121249761 isoform X1 [Juglans microcarpa x Juglans re... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LCS01.2e-1861.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1[more]
A0A2P5CWE39.9e-0848.81Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_116840 PE... [more]
A0A540L8401.7e-0750.00Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_031846 PE=4 SV=1[more]
A0A498HG622.2e-0748.78Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037098 PE=4 SV=1[more]
A0A540M3Y64.9e-0748.78Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_021117 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..96
NoneNo IPR availablePANTHERPTHR37908:SF4PROTEIN, PUTATIVE-RELATEDcoord: 29..92
NoneNo IPR availablePANTHERPTHR37908TRANSMEMBRANE PROTEINcoord: 29..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0021124.1Sed0021124.1mRNA
Sed0021124.2Sed0021124.2mRNA