Sed0020988 (gene) Chayote v1

Overview


Name	Sed0020988
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ATP-dependent Clp protease ATP-binding subunit CLPT1
Location	LG13: 1290281 .. 1294836 (+)
RNA-Seq Expression	Sed0020988
Synteny	Sed0020988

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTATCCAACGCTTTCACGAGACCCTAAAACGAGAGAGCAAGAACCCAACCAACCAACACCATCTTCCTTCTCAAACTTATTAAACTCTTTCCACCAAATTCAAGCTTTTCTCAGCCTCTAATGGCGGCCACTCGCATCAATTCTCTTTTGCTTTCCCAAATCCCATTTTCCCTTCCAACCCAATCCAATTCTCACGAACACAAATCTCTGTTCCTTCCTATTTCCCCTCTAACGGAGCTGAAGCTCGCAATTAAGCGCTCCAATGCCACCCGTTCGGTCTCCAAGTTCAGCCGCCGTGCAGCGTCCGCCACTGTGTCGTTTAGCCTCCCGGCTTCGTATGATTTGATTCGTATCCTTGTTTGTGTTGTTGGGTTTTATTTGGAAAACCCTTATGATTTGAAATTTCTGTCTGGTTTTGCAGGGACTCCCAGGGCGTTTCCTCTGACAAAATTCCTAAGTAAGTTTACTCCTCATTCGATTGGTGTATTTCTTCTACATTCGTTGAGCTTAATTGGTGTTAATTTTAGTTTTTGTTGTTTGTCTGAGATTGGGAAAGTGAGAAAACCCTAACTAAGTTGATATGTTATCGGACCCCATTAAATCAAAACTGGTATTTGGTCTAATAAAAATGAATTTGGGCCTGAATGGTGAATCCTAAAGAGGCATCATTTTTAGGGGTGATGTGGACGATCCCACATTGGATAGGTGAGGAGACCTCCTCGCATATATAAGATATGAGCTACTTCTCGTTACCGATTGATTTTGAAATGAAATCTCTTACTATCTATAACATGCACTCACATTATGTGAAGGTTTTTTTTTTTATTGGGAATTGTAACTTCGGCCCAGTATGTATTCTGAACACATGTGCCCGTCCTAAGGCCTAGACTCGGTAGACAATAAGTGATTTTACAATTAAGCTCAATCGTTGGTTTCAAACCTGAGACCCAAGCCTTTACCCACGAGGCCGCCTCTCGGGGACATACGTGAAGATGATATTATAATTTAACTAATCTTGAGGGCTGTTGATTATTTAGGTTAAACTGTAACTTTAGTCCTTACCAATAATTTAAACACTCTAATTTTAGTTTTAAGGGTCCCTAAGGGGTGGCGCGCTGGTCGAAGGCTTGTGTTTTAAAGGTGTGCTCTCTTCAAAGTCTCAGGTGCAAGACTTACTTGTGACATTAATTTGTAGACACTTCCTGTTTTTCCATTCCTTCGATGTCTTCTCGTGTCTGACCTAGGGACTGGCATGGTTACCTTAGATATAGTGAAGCAAAGTTTCGATTTCCCGGTTTCAAAAAAAAAAAATTAGTCTTTAAGGGTCTGTCTGGAAGGTAAGGACTGTGGTTGAAACTGAAATGTTAAAGCTATTTTCCCGGATTCAAAAAAAAAAAAAAACAAATTTAGTCTTTAAGGGTCTGTCTGGAAGGTATGGACTGTGGTTGAAACTGAAATGTTAAAGCTATTGTGCAATTGAAACAATTCGCAGATATGTTGAGCCATAATCAAACAGAGTAGATGTCTGACCTCTTGGTCGCTGCATTTCGTAGAATGCCTTCCTCTTATTTTTCGCTTTTTGGTTCTCTGTCTTTTATCATCTATCCAAATTTATTTCTCAGCATTTCAGCACACCATAGCTGTTGTACTATTTGTTATATGAATTCTCCTCTTCAGCATTAGATTGTCAATTAATGCAGCACTGATTGTGGTGCTAATTGGAATAATTGTTTGTTAAATTTGTGATGTGTAAGATGGTCAGCAAGAGCAATCAAGTCATTTGCAATGGCAAAATTGGAAGCAAGGAAACTCAAATACCCAAATACTGGCACAGAAGCTTTGCTGATGGGAATTTTGATTGAGGGTTAGTAGCTGTTCCAACTCTGTGGTCGTTTATTATTTCATCCTAATTTGGACTTTCAATTTTATTTAGTTTATTCAAATGCATTTGACTTGCAAATGTTGGACCTTTTTTTAATGTTTTGTAAATACACTGAAATCATGATCCTCTCTCAAGGAGCTAACATTTGATTATCACTTTCAAAATGTGGTTAATTTGTCTCACCCCACGTTCTTTTCCAGCACCGTTTCATTGTATCCATTGTCACCTGAGTTTCTGACGTTCAATTACAGAATTTTTTTTCATAAGATTTGTTTCTGTTAAAGAATTTGACATTGAAGCCTATGTTCATGTCAGCTCCGCTCAGCTGATGATTATGAGTAACCTATCTTTGACATTAGCCATGGGTCACTGGCCACATTCTTTTTTAATGCCCTTATGCTTAATTACAATATACATGGTAAAGTTAATTGACAATTTTCAACCTTTCTCTAAAAAATGGATAGGAAAAGAAAATATAATGAATACAGGTGCATATTCTTCGCTTCATTTTCGTCTATGCGTCAGTTTCAGTGCTTCAAAATTTTCATTTTCCTTGATGTATATTTCTTTACATTAATTTCAGGAACAAGTATAGCTGCTAGGTTCCTGAGGGCTAATGGAATTACACTTTTCAAAGTAAGAGAAGAAACTGTCAAGCTACTTGGCAAATCTGACATGTATTTCTTCAGCCCAGAGCATCCACCATTGACCGAACCTGCTCAGAGGGCACTCGATTGGGCAGTTGCCGAGAAGTCAAAGTCAGGTGAAAATCTTAGAGCATCCTTCTTAATCATGCAGCCAATGCAATTCTTATTTAGTCTGAAAGTGAATGTGATTCTTGAGTTTTCTAATGAAACCTCCTCTACACATGCACATCTAAGCTACCATTATAAAGAATGAGATGTTAGGATTACAAGTTTTTTTACCTCTGGTCGAATCAGATTTTTAGAATTGCCTATTGATGTGTTCAAACAAGGGCCTAATTGGCAGGGGAAAACAGATGAAGAGAGGTTGTGTGTTTTTGCCAGACTCTTTGACAGCTTGAGTGGAAAGGAAATAAATGAGACGATTCTTCCTTGGCTTGGATAGTGAATACCTGATTTAGTTTAGCTTGCCTCAATAGAATAGTGTATAAATGCTTCAGGATTATGCTTGCCACAATTTAAGTGGTAGCTATTTCTTTCGAACAGTTTTGAAGTTTTGTCGCCTACAGGCTACAAAGATTTAATTGTAAGCCATTTATTTTCTCATTTAGCTAGAAACACCCACTTGCAAGGATTTTCACCTTTTTGGAAATTTTAGTGGAAAAGAATTTGATATGATTCAGGATCTGAATTATATCAAAAGATAAAAGATTACAAGATAAACCAAGATTTGATAGGTCTTCGAACCTCCCCTCTCGAGAGAATCTCTTGAGCCTTACAATAAATCACTCAATAACTCATTCAATAATTTGGATGCCTAAACCTTAACCTAACTCACTTTATTTATAACAAAATCCTAACTTACTCTCCAAGTAATTGCTAACATAGAGCCCTAGGCCCAACCTTATCAAAATTTCAGTCCATCTTAGTATCTACTTATTCACAAAACTTGTACAAATATGCACAAGTATGTTTGTATGAACTTATTAATTGAAGATTTTGACTAGAGTAATTATGAGCTATGACATATGTGCATTTCAATATGTACCTTTCTTATGATAGTCTCCGTTGATTGAACCTAAGGTCTTGTATGCAGGTCAATCTGGGGAAATAACTGTAGGTCATTTGCTTCTTGGTATCTGGTCAGAGGAATCAGCGGGTCACAAGATCTTGGCCGCCCTTGGCTTTGATGATGAGAAAGCGAAAGAGCTCGAGAAAACCGTAAGTTTTAAGTTATATTCGTCTAGTTAGTAGCTCCATCGGGCTTGATGATTACGCAACTAATGTCTTTGTTGTTCACAGTTGGACAAGGATGCAACTTTCAGTTACAAGTAGATGGATCGTGTAGGAAGATGTGATTTTCATATTTTTGTGGATGGAATCCTCACAAAGGAACCCCAAAGTGAAATTCATATATATGGATTCTCGTGCATCCATTTGGTGGTTAGTGATTTGCCTGTTTAATCAACACCTGCCGTTCAACATAATCAGCTTCATTTCGAATTGACTATTGTTTGAACTTGTGGAGTGCTGGTATGGTACGCTACATTTCATTGGTCTCAAATTTTGCTTGCAGGACATAGTTTTCAACTGCGGGGATTTTTTTTTTTGGACAAGCAACCTGAGTTTAAAAAGGAACAATAAGTTATAACCCCTATAATTAACACATAAGATTCTTAATTTTGTCTTTGCAAGCCATCCTCGATTATTTTTTAATTTAAGCATTTAATTGTTATTATTTTTTGTTTATTTTATGCTTTAATTTATGGGGTTCTGCCTTGGCCATATTGATAGAGGCTAGGATTCTCCAAGCTCTCTTAGAGGTTGCAGGTTCGAAACCCATGAGTGAATTGAATTGTAAAATTTCTTCTTTTTTTTTCGCTCGGGTCTGGCCTTGGGACGAGTGAGCTCCAATTCCCGTTTATAAAAAGAAAAGGAGTTATGGGGTTCCACCTGCAAACATTCTAACTTCATAACATCTTAATTTCTCTCTCGTGTTAAGTTTGTTTCCACATTTTTTTTCCAAG

mRNA sequence

AAATTATCCAACGCTTTCACGAGACCCTAAAACGAGAGAGCAAGAACCCAACCAACCAACACCATCTTCCTTCTCAAACTTATTAAACTCTTTCCACCAAATTCAAGCTTTTCTCAGCCTCTAATGGCGGCCACTCGCATCAATTCTCTTTTGCTTTCCCAAATCCCATTTTCCCTTCCAACCCAATCCAATTCTCACGAACACAAATCTCTGTTCCTTCCTATTTCCCCTCTAACGGAGCTGAAGCTCGCAATTAAGCGCTCCAATGCCACCCGTTCGGTCTCCAAGTTCAGCCGCCGTGCAGCGTCCGCCACTGTGTCGTTTAGCCTCCCGGCTTCGGACTCCCAGGGCGTTTCCTCTGACAAAATTCCTAAATGGTCAGCAAGAGCAATCAAGTCATTTGCAATGGCAAAATTGGAAGCAAGGAAACTCAAATACCCAAATACTGGCACAGAAGCTTTGCTGATGGGAATTTTGATTGAGGGAACAAGTATAGCTGCTAGGTTCCTGAGGGCTAATGGAATTACACTTTTCAAAGTAAGAGAAGAAACTGTCAAGCTACTTGGCAAATCTGACATGTATTTCTTCAGCCCAGAGCATCCACCATTGACCGAACCTGCTCAGAGGGCACTCGATTGGGCAGTTGCCGAGAAGTCAAAGTCAGGTCAATCTGGGGAAATAACTGTAGGTCATTTGCTTCTTGGTATCTGGTCAGAGGAATCAGCGGGTCACAAGATCTTGGCCGCCCTTGGCTTTGATGATGAGAAAGCGAAAGAGCTCGAGAAAACCTTGGACAAGGATGCAACTTTCAGTTACAAGTAGATGGATCGTGTAGGAAGATGTGATTTTCATATTTTTGTGGATGGAATCCTCACAAAGGAACCCCAAAGTGAAATTCATATATATGGATTCTCGTGCATCCATTTGGTGGACATAGTTTTCAACTGCGGGGATTTTTTTTTTTGGACAAGCAACCTGAGTTTAAAAAGGAACAATAAGTTATAACCCCTATAATTAACACATAAGATTCTTAATTTTGTCTTTGCAAGCCATCCTCGATTATTTTTTAATTTAAGCATTTAATTGTTATTATTTTTTGTTTATTTTATGCTTTAATTTATGGGGTTCTGCCTTGGCCATATTGATAGAGGCTAGGATTCTCCAAGCTCTCTTAGAGGTTGCAGGTTCGAAACCCATGAGTGAATTGAATTGTAAAATTTCTTCTTTTTTTTTCGCTCGGGTCTGGCCTTGGGACGAGTGAGCTCCAATTCCCGTTTATAAAAAGAAAAGGAGTTATGGGGTTCCACCTGCAAACATTCTAACTTCATAACATCTTAATTTCTCTCTCGTGTTAAGTTTGTTTCCACATTTTTTTTCCAAG

Coding sequence (CDS)

ATGGCGGCCACTCGCATCAATTCTCTTTTGCTTTCCCAAATCCCATTTTCCCTTCCAACCCAATCCAATTCTCACGAACACAAATCTCTGTTCCTTCCTATTTCCCCTCTAACGGAGCTGAAGCTCGCAATTAAGCGCTCCAATGCCACCCGTTCGGTCTCCAAGTTCAGCCGCCGTGCAGCGTCCGCCACTGTGTCGTTTAGCCTCCCGGCTTCGGACTCCCAGGGCGTTTCCTCTGACAAAATTCCTAAATGGTCAGCAAGAGCAATCAAGTCATTTGCAATGGCAAAATTGGAAGCAAGGAAACTCAAATACCCAAATACTGGCACAGAAGCTTTGCTGATGGGAATTTTGATTGAGGGAACAAGTATAGCTGCTAGGTTCCTGAGGGCTAATGGAATTACACTTTTCAAAGTAAGAGAAGAAACTGTCAAGCTACTTGGCAAATCTGACATGTATTTCTTCAGCCCAGAGCATCCACCATTGACCGAACCTGCTCAGAGGGCACTCGATTGGGCAGTTGCCGAGAAGTCAAAGTCAGGTCAATCTGGGGAAATAACTGTAGGTCATTTGCTTCTTGGTATCTGGTCAGAGGAATCAGCGGGTCACAAGATCTTGGCCGCCCTTGGCTTTGATGATGAGAAAGCGAAAGAGCTCGAGAAAACCTTGGACAAGGATGCAACTTTCAGTTACAAGTAG

Protein sequence

MAATRINSLLLSQIPFSLPTQSNSHEHKSLFLPISPLTELKLAIKRSNATRSVSKFSRRAASATVSFSLPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGILIEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKSKSGQSGEITVGHLLLGIWSEESAGHKILAALGFDDEKAKELEKTLDKDATFSYK

Homology

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BLAST of Sed0020988 vs. NCBI nr
Match: XP_022141304.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 389.8 bits (1000), Expect = 1.6e-104
Identity = 203/234 (86.75%), Postives = 218/234 (93.16%), Query Frame = 0


Query: 1   MAATRINSLLLSQIPFSLPTQSNSH--EHKSLFLPISPLTELKLAIKRSNATRSVSKFSR 60
           MAATR+NSL LSQ+PFSL TQSN +  EHK+LFLP+SPL ELKLAIKRSN T SVSKF+R
Sbjct: 1   MAATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTR 60

Query: 61  RAASATVSFSLPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGIL 120
           RA +ATVSFSLPA+  +GVS DK+PKWSARAIKSFAMA+LEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPATKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKS 180
           IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEK 
Sbjct: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEITVGHLLLGIWSEESAGHKILAALGFDDEKAKELEKTLDKDATFSYK 233
           KSG+SGEIT GHLLLGIWSEESAG KILA LGFDDEKAKE+EK++DKDATFSYK
Sbjct: 181 KSGESGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKSVDKDATFSYK 234

[Close]

BLAST of Sed0020988 vs. NCBI nr
Match: KAA0033572.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1 [Cucumis melo var. makuwa] >TYK30329.1 ATP-dependent Clp protease ATP-binding subunit CLPT1 [Cucumis melo var. makuwa])

HSP 1 Score: 377.9 bits (969), Expect = 6.4e-101
Identity = 198/234 (84.62%), Postives = 212/234 (90.60%), Query Frame = 0


Query: 1   MAATRINSLLLSQIPFSLPTQSN--SHEHKSLFLPISPLTELKLAIKRSNATRSVSKFSR 60
           MAATR+NSL  SQ+P SLP+QSN  S EHK L  P++PL ELKLAIKRSNAT  VSKF+R
Sbjct: 1   MAATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTR 60

Query: 61  RAASATVSFSLPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGIL 120
           RA +ATVSFSLPAS  +GVS +K+PKWSARAIKSFAMA+LEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKS 180
           IEGTS AA+FLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEK 
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEITVGHLLLGIWSEESAGHKILAALGFDDEKAKELEKTLDKDATFSYK 233
           KSGQSGEIT GHLLLGIWSEESAG KILA LGFDDEKAKE+ KT+DKDATFSYK
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Sed0020988 vs. NCBI nr
Match: KAG6576777.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014811.1 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 376.7 bits (966), Expect = 1.4e-100
Identity = 200/234 (85.47%), Postives = 212/234 (90.60%), Query Frame = 0


Query: 1   MAATRINSLLLSQIPFSLPTQSN--SHEHKSLFLPISPLTELKLAIKRSNATRSVSKFSR 60
           MAATR+NSL LS +PFSLP QSN  S E K+LFLP SPL +L LAIKRSNAT SVSKF+R
Sbjct: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60

Query: 61  RAASATVSFSLPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGIL 120
           RA +ATVSFSLPAS  +GVS DK+PKWSARAIKSFAMA+LEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKS 180
           IEGT+IAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTE AQRALDWAVAEK 
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEITVGHLLLGIWSEESAGHKILAALGFDDEKAKELEKTLDKDATFSYK 233
           KSGQSGEIT GHLLL IWSEESAG KILA LGFDDEKAKE+EKT+D DATFSYK
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234

[Close]

BLAST of Sed0020988 vs. NCBI nr
Match: XP_038877997.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 375.2 bits (962), Expect = 4.2e-100
Identity = 198/232 (85.34%), Postives = 209/232 (90.09%), Query Frame = 0


Query: 3   ATRINSLLLSQIPFSLPTQSN--SHEHKSLFLPISPLTELKLAIKRSNATRSVSKFSRRA 62
           A  +NSL LSQ+PFSLP QSN  S EHK+LFLP SPL ELKLAIKRSN T   SKFSRRA
Sbjct: 2   AASMNSLSLSQLPFSLPAQSNCYSSEHKALFLPPSPLIELKLAIKRSNPTHPASKFSRRA 61

Query: 63  ASATVSFSLPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGILIE 122
            +ATVSFSLPAS  +GVS +KIPKWSARAIKSF MA+LEARKLKYPNTGTEALLMGILIE
Sbjct: 62  TTATVSFSLPASKPEGVSPEKIPKWSARAIKSFTMAELEARKLKYPNTGTEALLMGILIE 121

Query: 123 GTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKSKS 182
           GTS AA+FLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVA+K KS
Sbjct: 122 GTSNAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAKKLKS 181

Query: 183 GQSGEITVGHLLLGIWSEESAGHKILAALGFDDEKAKELEKTLDKDATFSYK 233
           GQSGEIT GHLLLGIWSEESAG KILA LGFDDEKAKE+EKT+DKDATFSYK
Sbjct: 182 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDATFSYK 233

[Close]

BLAST of Sed0020988 vs. NCBI nr
Match: XP_023552673.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.2 bits (962), Expect = 4.2e-100
Identity = 199/234 (85.04%), Postives = 211/234 (90.17%), Query Frame = 0


Query: 1   MAATRINSLLLSQIPFSLPTQSN--SHEHKSLFLPISPLTELKLAIKRSNATRSVSKFSR 60
           MAATR+NSL LS +PFSLP QSN  S E K+LFLP SPL +L LAIKRSNAT SVSKF+R
Sbjct: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60

Query: 61  RAASATVSFSLPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGIL 120
           RA +ATVSFSLPAS  +GVS DK+PKWSARAIKSFAM +LEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKS 180
           IEGT+IAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTE AQRALDWAVAEK 
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEITVGHLLLGIWSEESAGHKILAALGFDDEKAKELEKTLDKDATFSYK 233
           KSGQSGEIT GHLLL IWSEESAG KILA LGFDDEKAKE+EKT+D DATFSYK
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234

[Close]

BLAST of Sed0020988 vs. ExPASy Swiss-Prot
Match: Q93WL3 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPT1 PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.7e-59
Identity = 125/225 (55.56%), Postives = 161/225 (71.56%), Query Frame = 0


Query: 9   LLLSQIPFSLPTQSNSHEHKSLFLPISPLTELKLAIKRSNATRSVSKFSRRAASATVSFS 68
           L LS     +  Q+ S    S     S L   KL   + +    V K  R   SA+   +
Sbjct: 11  LTLSNPRIFVSRQNGSPSSSSRIPLTSSLLGKKLLATQPSHRCFVPKL-RCLTSASTVLN 70

Query: 69  LPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGILIEGTSIAARF 128
           +P +  +  SSDKIPKWSARAIKS AM +LEARKLKYP+TGTEA+LMGIL+EGTS  A+F
Sbjct: 71  VPIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMGILVEGTSTVAKF 130

Query: 129 LRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKSKSGQSGEITV 188
           LR NG+TLFKVR+ET+ LLGKSDMYFFSPEHPPLTEPAQ+A+ WA+ EK+KS   GE+T 
Sbjct: 131 LRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDEKNKSDVDGELTT 190

Query: 189 GHLLLGIWSE-ESAGHKILAALGFDDEKAKELEKTLDKDATFSYK 233
            +LLLG+WS+ +SAG +IL  LGF+++KAKE+EK++++D   S+K
Sbjct: 191 AYLLLGVWSQKDSAGRQILEKLGFNEDKAKEVEKSMNEDVDLSFK 234

[Close]

BLAST of Sed0020988 vs. ExPASy Swiss-Prot
Match: Q8GW78 (ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPT2 PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-54
Identity = 118/165 (71.52%), Postives = 133/165 (80.61%), Query Frame = 0


Query: 58  RRAASATVSFSLPASDSQGVSSD-KIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMG 117
           RR   + +S SLP ++   V SD K PKWS RAIKSFAM +LEARKLKYPNTGTEALLMG
Sbjct: 67  RRIHKSAIS-SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMG 126

Query: 118 ILIEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAE 177
           ILIEGTS  ++FLRAN I L+KVREETVKLLGK+DMYFFSPEHPPLTE AQRALD A+ +
Sbjct: 127 ILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQ 186

Query: 178 KSKSGQSGEITVGHLLLGIWSE-ESAGHKILAALGFDDEKAKELE 221
             K+G  GE+   H+LLGIWSE ES GHKILA LGF DEK+KELE
Sbjct: 187 NLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELE 230

[Close]

BLAST of Sed0020988 vs. ExPASy Swiss-Prot
Match: P46523 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Fragment) OS=Brassica napus OX=3708 GN=CLPA PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-12
Identity = 50/140 (35.71%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 74  SQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGILIEGTSIAARFLRANG 133
           S+GV      +++ +AIK   +A+ EAR+L +   GTE +L+G++ EGT IAA+ L++ G
Sbjct: 34  SRGVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMG 93

Query: 134 ITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKSKSGQSGEITVGHLLL 193
           I L   R E  K++G+     F     P T  A+R L+ ++ E  + G +  I   HLLL
Sbjct: 94  INLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLL 153

Query: 194 GIWSE-ESAGHKILAALGFD 213
           G+  E E    ++L  LG D
Sbjct: 154 GLLREGEGVAARVLENLGAD 170

[Close]

BLAST of Sed0020988 vs. ExPASy Swiss-Prot
Match: Q7F9I1 (Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC1 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-11
Identity = 58/172 (33.72%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 44  IKRSNATRSVSKFSRRAASATVS-FSLPAS-DSQGVSSDKIPKWSARAIKSFAMAKLEAR 103
           ++++N   S S   R   S   S  S P    S+GV      +++ +AIK   +A+ EAR
Sbjct: 48  LRQTNFLDSRSVIKRDFGSIVASQISRPRGLGSRGVVRAMFERFTEKAIKVIMLAQEEAR 107

Query: 104 KLKYPNTGTEALLMGILIEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPP 163
           +L +   GTE +L+G++ EGT IAA+ L++ GI L   R E  K++G+     F     P
Sbjct: 108 RLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGS--GFVAVEIP 167

Query: 164 LTEPAQRALDWAVAEKSKSGQSGEITVGHLLLGIWSE-ESAGHKILAALGFD 213
            T  A+R L+ ++ E  + G +  I   HLLLG+  E E    ++L +LG D
Sbjct: 168 FTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLESLGAD 216

[Close]

BLAST of Sed0020988 vs. ExPASy Swiss-Prot
Match: Q9TM05 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog OS=Cyanidium caldarium OX=2771 GN=clpC PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-11
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 84  KWSARAIKSFAMAKLEARKLKYPNTGTEALLMGILIEGTSIAARFLRANGITLFKVREET 143
           +++ +A+K   +A+ EAR+L +   GTE +L+GIL EGT +AA+ L++ GITL   R E 
Sbjct: 35  RFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKDARIEV 94

Query: 144 VKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKSKSGQSGEITVGHLLLGIWSE-ESAG 203
            K++G+     F     P T  A++ L+ A+ E+S+      +   HLLLG+  E E   
Sbjct: 95  EKIIGRGS--GFVAIEIPFTPRAKKILELAI-EESRILTHNYVGTEHLLLGLIKEGEGVA 154

Query: 204 HKILAALGFDDEKAK 218
            ++L  LG D  K +
Sbjct: 155 ARVLENLGVDLPKLR 166

[Close]

BLAST of Sed0020988 vs. ExPASy TrEMBL
Match: A0A6J1CI79 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011733 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 7.9e-105
Identity = 203/234 (86.75%), Postives = 218/234 (93.16%), Query Frame = 0


Query: 1   MAATRINSLLLSQIPFSLPTQSNSH--EHKSLFLPISPLTELKLAIKRSNATRSVSKFSR 60
           MAATR+NSL LSQ+PFSL TQSN +  EHK+LFLP+SPL ELKLAIKRSN T SVSKF+R
Sbjct: 1   MAATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTR 60

Query: 61  RAASATVSFSLPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGIL 120
           RA +ATVSFSLPA+  +GVS DK+PKWSARAIKSFAMA+LEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPATKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKS 180
           IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEK 
Sbjct: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEITVGHLLLGIWSEESAGHKILAALGFDDEKAKELEKTLDKDATFSYK 233
           KSG+SGEIT GHLLLGIWSEESAG KILA LGFDDEKAKE+EK++DKDATFSYK
Sbjct: 181 KSGESGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKSVDKDATFSYK 234

[Close]

BLAST of Sed0020988 vs. ExPASy TrEMBL
Match: A0A5D3E3F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1044G00010 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.1e-101
Identity = 198/234 (84.62%), Postives = 212/234 (90.60%), Query Frame = 0


Query: 1   MAATRINSLLLSQIPFSLPTQSN--SHEHKSLFLPISPLTELKLAIKRSNATRSVSKFSR 60
           MAATR+NSL  SQ+P SLP+QSN  S EHK L  P++PL ELKLAIKRSNAT  VSKF+R
Sbjct: 1   MAATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTR 60

Query: 61  RAASATVSFSLPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGIL 120
           RA +ATVSFSLPAS  +GVS +K+PKWSARAIKSFAMA+LEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKS 180
           IEGTS AA+FLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEK 
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEITVGHLLLGIWSEESAGHKILAALGFDDEKAKELEKTLDKDATFSYK 233
           KSGQSGEIT GHLLLGIWSEESAG KILA LGFDDEKAKE+ KT+DKDATFSYK
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Sed0020988 vs. ExPASy TrEMBL
Match: A0A1S3AY13 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103484006 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.6e-100
Identity = 197/234 (84.19%), Postives = 211/234 (90.17%), Query Frame = 0


Query: 1   MAATRINSLLLSQIPFSLPTQSN--SHEHKSLFLPISPLTELKLAIKRSNATRSVSKFSR 60
           MAATR+NSL  SQ+P SLP+QSN  S EHK L  P++PL ELKLAIKRSNAT  VSKF+R
Sbjct: 1   MAATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTR 60

Query: 61  RAASATVSFSLPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGIL 120
           RA +ATVSFSLPAS  +GVS +K+PKWSARAIKSFAMA+LEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKS 180
           IEGTS AA+FLRANGITLFKVREETVKLLGKSDMYFFS EHPPLTEPAQRALDWAVAEK 
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSSEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEITVGHLLLGIWSEESAGHKILAALGFDDEKAKELEKTLDKDATFSYK 233
           KSGQSGEIT GHLLLGIWSEESAG KILA LGFDDEKAKE+ KT+DKDATFSYK
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Sed0020988 vs. ExPASy TrEMBL
Match: A0A6J1E4F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111430678 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.3e-99
Identity = 198/234 (84.62%), Postives = 211/234 (90.17%), Query Frame = 0


Query: 1   MAATRINSLLLSQIPFSLPTQSN--SHEHKSLFLPISPLTELKLAIKRSNATRSVSKFSR 60
           MAATR+NSL LS +P SLP QSN  S E K+LFLP+SPL +L LAIKRSNAT SVSKF+R
Sbjct: 1   MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFTR 60

Query: 61  RAASATVSFSLPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGIL 120
           RA +ATVSFSLPAS  +GVS DK+PKWSARAIKSFAMA+LEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKS 180
           IEGT+IAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTE AQRALDWAVAEK 
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEITVGHLLLGIWSEESAGHKILAALGFDDEKAKELEKTLDKDATFSYK 233
           KSGQSGEIT GHLLL IWSEESAG KILA LGFD EKAKE+EKT+D DATFSYK
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDGEKAKEIEKTVDNDATFSYK 234

[Close]

BLAST of Sed0020988 vs. ExPASy TrEMBL
Match: A0A6J1HY47 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467707 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.5e-99
Identity = 194/232 (83.62%), Postives = 208/232 (89.66%), Query Frame = 0


Query: 1   MAATRINSLLLSQIPFSLPTQSNSH--EHKSLFLPISPLTELKLAIKRSNATRSVSKFSR 60
           MAAT +NSL LS +PFSLP QS  H  E K+LFLP+SPLTEL LAIKRS AT  V KFSR
Sbjct: 1   MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 61  RAASATVSFSLPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGIL 120
           RA +ATVSFSLPAS  +G+S DK+PKWSARAIKSFAMA+LEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGISPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKS 180
            EGTSIAA+FLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQR LDWAVA+K 
Sbjct: 121 NEGTSIAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRVLDWAVAKKV 180

Query: 181 KSGQSGEITVGHLLLGIWSEESAGHKILAALGFDDEKAKELEKTLDKDATFS 231
           +SGQSGEITVGHLLLGIWSEESAG KILA LGFDDEKAKE+EKT+DKD TFS
Sbjct: 181 ESGQSGEITVGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDTTFS 232

[Close]

BLAST of Sed0020988 vs. TAIR 10
Match: AT4G25370.1 (Double Clp-N motif protein )

HSP 1 Score: 229.6 bits (584), Expect = 2.6e-60
Identity = 125/225 (55.56%), Postives = 161/225 (71.56%), Query Frame = 0


Query: 9   LLLSQIPFSLPTQSNSHEHKSLFLPISPLTELKLAIKRSNATRSVSKFSRRAASATVSFS 68
           L LS     +  Q+ S    S     S L   KL   + +    V K  R   SA+   +
Sbjct: 11  LTLSNPRIFVSRQNGSPSSSSRIPLTSSLLGKKLLATQPSHRCFVPKL-RCLTSASTVLN 70

Query: 69  LPASDSQGVSSDKIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMGILIEGTSIAARF 128
           +P +  +  SSDKIPKWSARAIKS AM +LEARKLKYP+TGTEA+LMGIL+EGTS  A+F
Sbjct: 71  VPIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMGILVEGTSTVAKF 130

Query: 129 LRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKSKSGQSGEITV 188
           LR NG+TLFKVR+ET+ LLGKSDMYFFSPEHPPLTEPAQ+A+ WA+ EK+KS   GE+T 
Sbjct: 131 LRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDEKNKSDVDGELTT 190

Query: 189 GHLLLGIWSE-ESAGHKILAALGFDDEKAKELEKTLDKDATFSYK 233
            +LLLG+WS+ +SAG +IL  LGF+++KAKE+EK++++D   S+K
Sbjct: 191 AYLLLGVWSQKDSAGRQILEKLGFNEDKAKEVEKSMNEDVDLSFK 234

[Close]

BLAST of Sed0020988 vs. TAIR 10
Match: AT4G12060.1 (Double Clp-N motif protein )

HSP 1 Score: 214.5 bits (545), Expect = 8.8e-56
Identity = 118/165 (71.52%), Postives = 133/165 (80.61%), Query Frame = 0


Query: 58  RRAASATVSFSLPASDSQGVSSD-KIPKWSARAIKSFAMAKLEARKLKYPNTGTEALLMG 117
           RR   + +S SLP ++   V SD K PKWS RAIKSFAM +LEARKLKYPNTGTEALLMG
Sbjct: 67  RRIHKSAIS-SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMG 126

Query: 118 ILIEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAE 177
           ILIEGTS  ++FLRAN I L+KVREETVKLLGK+DMYFFSPEHPPLTE AQRALD A+ +
Sbjct: 127 ILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQ 186

Query: 178 KSKSGQSGEITVGHLLLGIWSE-ESAGHKILAALGFDDEKAKELE 221
             K+G  GE+   H+LLGIWSE ES GHKILA LGF DEK+KELE
Sbjct: 187 NLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELE 230

[Close]

BLAST of Sed0020988 vs. TAIR 10
Match: AT5G50920.1 (CLPC homologue 1 )

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-12
Identity = 47/130 (36.15%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 84  KWSARAIKSFAMAKLEARKLKYPNTGTEALLMGILIEGTSIAARFLRANGITLFKVREET 143
           +++ +AIK   +A+ EAR+L +   GTE +L+G++ EGT IAA+ L++ GI L   R E 
Sbjct: 97  RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 156

Query: 144 VKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKSKSGQSGEITVGHLLLGIWSE-ESAG 203
            K++G+     F     P T  A+R L+ ++ E  + G +  I   HLLLG+  E E   
Sbjct: 157 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVA 216

Query: 204 HKILAALGFD 213
            ++L  LG D
Sbjct: 217 ARVLENLGAD 223

[Close]

BLAST of Sed0020988 vs. TAIR 10
Match: AT3G48870.1 (Clp ATPase )

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-11
Identity = 54/170 (31.76%), Postives = 88/170 (51.76%), Query Frame = 0


Query: 49  ATRSVSKFSRRAASATVSFSLPASDSQGVSSDKIPK-----WSARAIKSFAMAKLEARKL 108
           A  ++    R +    V + L  S  +  +S  +PK     ++ +AIK   +++ EAR+L
Sbjct: 77  APSALDYLGRPSPGFLVKYKLAKSSGREKASRCVPKAMFERFTEKAIKVIMLSQEEARRL 136

Query: 109 KYPNTGTEALLMGILIEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLT 168
            +   GTE +L+G++ EGT IAA+ L++ GI L   R E  K++G+     F     P T
Sbjct: 137 GHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEVEKIIGRGS--GFVAVEIPFT 196

Query: 169 EPAQRALDWAVAEKSKSGQSGEITVGHLLLGIWSE-ESAGHKILAALGFD 213
             A+R L+ ++ E  + G +  I   HLLLG+  E E    ++L  LG D
Sbjct: 197 PRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLGAD 243

[Close]

BLAST of Sed0020988 vs. TAIR 10
Match: AT3G48870.2 (Clp ATPase )

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-11
Identity = 54/170 (31.76%), Postives = 88/170 (51.76%), Query Frame = 0


Query: 49  ATRSVSKFSRRAASATVSFSLPASDSQGVSSDKIPK-----WSARAIKSFAMAKLEARKL 108
           A  ++    R +    V + L  S  +  +S  +PK     ++ +AIK   +++ EAR+L
Sbjct: 46  APSALDYLGRPSPGFLVKYKLAKSSGREKASRCVPKAMFERFTEKAIKVIMLSQEEARRL 105

Query: 109 KYPNTGTEALLMGILIEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLT 168
            +   GTE +L+G++ EGT IAA+ L++ GI L   R E  K++G+     F     P T
Sbjct: 106 GHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEVEKIIGRGS--GFVAVEIPFT 165

Query: 169 EPAQRALDWAVAEKSKSGQSGEITVGHLLLGIWSE-ESAGHKILAALGFD 213
             A+R L+ ++ E  + G +  I   HLLLG+  E E    ++L  LG D
Sbjct: 166 PRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLENLGAD 212

The following BLAST results are available for this feature:

BLAST of Sed0020988 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141304.1	1.6e-104	86.75	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Momord...	[more]
KAA0033572.1	6.4e-101	84.62	ATP-dependent Clp protease ATP-binding subunit CLPT1 [Cucumis melo var. makuwa] ...	[more]
KAG6576777.1	1.4e-100	85.47	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cu...	[more]
XP_038877997.1	4.2e-100	85.34	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Beninc...	[more]
XP_023552673.1	4.2e-100	85.04	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]

BLAST of Sed0020988 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93WL3	3.7e-59	55.56	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidops...	[more]
Q8GW78	1.2e-54	71.52	ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidops...	[more]
P46523	4.4e-12	35.71	ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Frag...	[more]
Q7F9I1	2.9e-11	33.72	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q9TM05	2.9e-11	35.56	ATP-dependent Clp protease ATP-binding subunit ClpA homolog OS=Cyanidium caldari...	[more]

BLAST of Sed0020988 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CI79	7.9e-105	86.75	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momo...	[more]
A0A5D3E3F8	3.1e-101	84.62	ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa...	[more]
A0A1S3AY13	2.6e-100	84.19	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1E4F8	1.3e-99	84.62	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1HY47	6.5e-99	83.62	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]

BLAST of Sed0020988 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25370.1	2.6e-60	55.56	Double Clp-N motif protein	[more]
AT4G12060.1	8.8e-56	71.52	Double Clp-N motif protein	[more]
AT5G50920.1	2.7e-12	36.15	CLPC homologue 1	[more]
AT3G48870.1	1.3e-11	31.76	Clp ATPase	[more]
AT3G48870.2	1.3e-11	31.76	Clp ATPase	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004176	Clp, repeat (R) domain	PFAM	PF02861	Clp_N	coord: 96..148 e-value: 7.0E-10 score: 38.9 coord: 179..221 e-value: 4.1E-6 score: 26.8
IPR004176	Clp, repeat (R) domain	PROSITE	PS51903	CLP_R	coord: 82..226 score: 31.442869
IPR036628	Clp, N-terminal domain superfamily	GENE3D	1.10.1780.10		coord: 84..230 e-value: 1.2E-43 score: 150.6
IPR036628	Clp, N-terminal domain superfamily	SUPERFAMILY	81923	Double Clp-N motif	coord: 84..216
None	No IPR available	PANTHER	PTHR47016:SF1	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC	coord: 1..232
IPR044217	ATP-dependent Clp protease ATP-binding subunit CLPT1/2	PANTHER	PTHR47016	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC	coord: 1..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020988.1	Sed0020988.1	mRNA
Sed0020988.2	Sed0020988.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009532	plastid stroma
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008233	peptidase activity