Sed0020965 (gene) Chayote v1

Overview


Name	Sed0020965
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transcription factor IIIB 90 kDa subunit
Location	LG04: 3664767 .. 3668088 (-)
RNA-Seq Expression	Sed0020965
Synteny	Sed0020965

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGAGATTCCAATTTTCTTTTCAAGAACAAGTGGTTTCTTTTTCTTCTCGGAGATTGATTTGGTGCCGCTCAGCGCATTTCGATTCGTTGATTGATATCGTAAGTATTCTATCAAGTTATCATGTTTGCGATCTTTAATGGAATCTAGGAATTGTTCTGAGATTTGTATGTTTGTTTAATTTCGTTTTCTCTCGTAATTTAGTGTTTAGGTCAAGAATCACTGATTTTAGCTTCCAGTTATCTAGGTTAGGTTCAAGGTTAGCCAATTACGAAAGGAAGTTTTAGTGCGTTGGATTTCTGATGAAGACGATTCTTCTGCATTTTCTTGCAACTGATTACCGAGTTTATGATTCAAAAAAATAGTGGTGATAGAGTAGATGTAAATGTGAAGTTTGTTCTGTAATTTGTGTTTGAAAATTGTACATTGAAATAATAATTTTGTATTTGAGATGGAGATTTTGGAAACTGATAGTCAGTGTAATTTTCTTATATTCTCTAAATCTGCTGCCCAAATAGTGCTAAACATGCATGTTATCAGCATTTCTATTGAATTTGGAAGCCCGTAGGCATATATTTTTTTCAACTGAGAAATTGGAGCGTTATTCCACTATATAATCATGCTCGTCCCTCGGTCAGACACCGAGAGATATCAAAGGAAGAGAGACACATGATATGTTTACAAATTAATGTTACAGTTGAGTCTTGAATCTCTGACCTTGAGGGAAGCACACCTTCAAAGCCCAAACCTTCAACCTTGATGGGGCCTGTAGGCTTTTCTCATTGTTATATTATCTGTTTGTCTTTGACCATTCCAGTCTGTCTTTCTGATTTGTTCTTGAGATGATATGTTTCTAGATGGATTTTTTTTTGAAGACCAACATGATGAAAATAGTGTTTTATTGGGTGGTGTAATTTGAGAAGGCTGTCTGTTTTTCTTTTCATTTTGAGCAACAAAGCTTTCTGGTATTAGTAGATTGTTAATGTCCATAGTTTGAAAAGATAGAACAGTGTTTTAAAACTGATTGCATGTTTATTGGTAAATGCTGTTGTTGTTTTCAGATGAAATCCACCGATGCATCACTGTTCAACTTGTTCTGCAAACGTAAGAATAAAACTTCTCTATCCAATGATGAGTCGGAGGACCTTAGTGATATTCTTGACAGTGAGGTACCCTACTATTTTTAATTGCATTAGCTTTTTTTTCTTATAAAAAAAAAAAATTTGCATAAGCTTTTAGTTTCTTAAATTTCTGCTACTGTTGGTATGGTGTTATTATAACTATAGTTTTTCACAAATTATAGGTGAACTCTTACCTAAACAATAAGAAGGAGGTACATTATAAAAAGATTATTTGGGAGCAAATTAACAAAGACTATCTTCAGGTTAAAGGCTTCTTTCCCCTCTCACCCTTTGATTTCTTCAAAGAAAAAAGATTGTCTCCACTTACGTTTACATTAGAAAAAATGGTTTTTTAATGTTTCAATCATAACTTAATTTTCAAGCAAATGTCATGCATGATTTTCAGGAACAAGCATCAAAGAAACAAGGTTGTCATGTAGCTAGAGCTGCAGCTGTGGTTAAAAAGTCGACAAAGGTACCTAAAAAACTATAGATCATGTTAGATAAAAAGCTTATCCAGAAAAAACCTTCACATTTGATGGTATGATTTATGTTTTTTATGTTGTTGGATATCAGAGACAAAGGAATAGTGAAGCTCCAACAAATAACCCTGCTCAAGCTGATTCAGAAGCTACACGTGAAATGCTAACTAAGAAGGTATATCAGCAAAATTAACTGAGGATAAATTCATCGGGTGGGCATGTCCTTCCTCATTGAATCTGTTCTTTTCTCATATTTAAGTGTTTAAGTTTCTTAATGTTGCATTCCTCGGCCGTTTACTAACCAGTTCACTAAAACCAACTTACACTCTTAAAACATCACGGAGTGGCTCAAGTGGTCAAAGAGGACTTTGGGATGCTTAAGGTGATGGGTTGTATCCAATATCCATGGAGACAACCTACTTAGGAATTAATTTCCTACGAGTTTCCTTGACATCTAAATATTGTAGGGTAAGATGATATGTCCCGTGACATTAGTCGAGGTGCGCGCAAGCCGGCCCTAGACAGTCATGGATATCAAAAAAAAAAAAAAAAAAAAAAAAATCTATTCCTAGCTATTGCCTTCTTGGTCTGGCATGCACCACAGGAATTCTCTGTGATTTATGAAAATTCCCTTTTTCCAAATCATTTTCTCAAGATACTCTCAAGTGTGATTATTTTGGTATGGAGAAGGGGATTTGTTTCTGTAGTTTCATGGTTTCTTGTATGCTAACAGCTAACCTATATAGTTTGGTTGTGTTTCATTAATTCACTCAATGGCTAATTTCCCACAATGGTTTTCTGCAGAGGCTTAGTTCGAAAATCAACTTTGATGTGTTGGAAGAACTCTTCTCTGACGTGGTATATTTTATCTATCTGTTTCTTCTTTCTTATTTTGGTATTGTTAAGTTTAGTTCATCCTAGTAATCGCATTTTCCCATTAAAATATAATTGGATTGTTAGTACAAGCAAATAACCTCTCGAAAAGGATGGAACACTATTTAACCTTCGATTAGCATGCTGTTGAATTATGTTAAACCACTGATCAACTCAAAAGCTTAAGGTGATGGGTTCACTCCCCCTTACTTGCGGGCTTTGCAATTTGAGAAATGTCCTACAAGTGGAATTAAATTTTAATTGCGGATGAAATGACTTGGCAAGAGCTCGAACTGAGGACTTCCTGTTCTGATGCTATGTTGAATTATGTTAAACCACCAATCAATCCAAAAACTTAAATTGATGGGTTTTTAGTAAATTTAATTATATTTACGACCCATGCATACACATGATTGCTTGAACTACCTAATAATTTGTGGGCAGCCTGCATCTGGTTCAAACAAAAAGCAGGAAGCCTCGAGCTGCGAAGAGAATACTTCATTTGAACAAAGCCACGGTAGGAACCAACTTGAAGAAGAAGAAGACCCCATCGACTCCAACATGGCGTATGAAGAGGATGTTGACGCGGAAGATGAAGATCCCACAGTAACTTATGGTAACGAGTATTATGATTTCGAAAACGAGGAAGAGTATGGTTATGGATACGACGACTATGATGAGGAATATTAGCTGATCTATTTATACATAAGCTTCTTAATTGCTTGAGTTCATGAGATAGATTTTCCAGATTACAGCAACAAGTGCATGAAGGAGCTCTGCATTAATTTTGGGTTTAGAATGTTTCGATGATAGGTTCAGGAATCCAGAGTCACATAACATTTTTTTT

mRNA sequence

GTCGAGATTCCAATTTTCTTTTCAAGAACAAGTGGTTTCTTTTTCTTCTCGGAGATTGATTTGGTGCCGCTCAGCGCATTTCGATTCGTTGATTGATATCATGAAATCCACCGATGCATCACTGTTCAACTTGTTCTGCAAACGTAAGAATAAAACTTCTCTATCCAATGATGAGTCGGAGGACCTTAGTGATATTCTTGACAGTGAGGTGAACTCTTACCTAAACAATAAGAAGGAGGTACATTATAAAAAGATTATTTGGGAGCAAATTAACAAAGACTATCTTCAGGAACAAGCATCAAAGAAACAAGGTTGTCATGTAGCTAGAGCTGCAGCTGTGGTTAAAAAGTCGACAAAGAGACAAAGGAATAGTGAAGCTCCAACAAATAACCCTGCTCAAGCTGATTCAGAAGCTACACGTGAAATGCTAACTAAGAAGAGGCTTAGTTCGAAAATCAACTTTGATGTGTTGGAAGAACTCTTCTCTGACGTGCCTGCATCTGGTTCAAACAAAAAGCAGGAAGCCTCGAGCTGCGAAGAGAATACTTCATTTGAACAAAGCCACGGTAGGAACCAACTTGAAGAAGAAGAAGACCCCATCGACTCCAACATGGCGTATGAAGAGGATGTTGACGCGGAAGATGAAGATCCCACAGTAACTTATGGTAACGAGTATTATGATTTCGAAAACGAGGAAGAGTATGGTTATGGATACGACGACTATGATGAGGAATATTAGCTGATCTATTTATACATAAGCTTCTTAATTGCTTGAGTTCATGAGATAGATTTTCCAGATTACAGCAACAAGTGCATGAAGGAGCTCTGCATTAATTTTGGGTTTAGAATGTTTCGATGATAGGTTCAGGAATCCAGAGTCACATAACATTTTTTTT

Coding sequence (CDS)

ATGAAATCCACCGATGCATCACTGTTCAACTTGTTCTGCAAACGTAAGAATAAAACTTCTCTATCCAATGATGAGTCGGAGGACCTTAGTGATATTCTTGACAGTGAGGTGAACTCTTACCTAAACAATAAGAAGGAGGTACATTATAAAAAGATTATTTGGGAGCAAATTAACAAAGACTATCTTCAGGAACAAGCATCAAAGAAACAAGGTTGTCATGTAGCTAGAGCTGCAGCTGTGGTTAAAAAGTCGACAAAGAGACAAAGGAATAGTGAAGCTCCAACAAATAACCCTGCTCAAGCTGATTCAGAAGCTACACGTGAAATGCTAACTAAGAAGAGGCTTAGTTCGAAAATCAACTTTGATGTGTTGGAAGAACTCTTCTCTGACGTGCCTGCATCTGGTTCAAACAAAAAGCAGGAAGCCTCGAGCTGCGAAGAGAATACTTCATTTGAACAAAGCCACGGTAGGAACCAACTTGAAGAAGAAGAAGACCCCATCGACTCCAACATGGCGTATGAAGAGGATGTTGACGCGGAAGATGAAGATCCCACAGTAACTTATGGTAACGAGTATTATGATTTCGAAAACGAGGAAGAGTATGGTTATGGATACGACGACTATGATGAGGAATATTAG

Protein sequence

MKSTDASLFNLFCKRKNKTSLSNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKDYLQEQASKKQGCHVARAAAVVKKSTKRQRNSEAPTNNPAQADSEATREMLTKKRLSSKINFDVLEELFSDVPASGSNKKQEASSCEENTSFEQSHGRNQLEEEEDPIDSNMAYEEDVDAEDEDPTVTYGNEYYDFENEEEYGYGYDDYDEEY

Homology

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BLAST of Sed0020965 vs. NCBI nr
Match: XP_022142780.1 (transcription factor IIIB 90 kDa subunit-like isoform X1 [Momordica charantia])

HSP 1 Score: 258.5 bits (659), Expect = 5.2e-65
Identity = 151/214 (70.56%), Postives = 175/214 (81.78%), Query Frame = 0


Query: 1   MKSTDASLFNLFCKRKNKTSLSNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKD 60
           M++ DASLF++F K K+K+S S+DESED+ DIL+SEVN YLNN+KE  YKKIIWE+INKD
Sbjct: 1   MRTKDASLFSMFFKXKDKSSPSDDESEDIGDILESEVNLYLNNEKEARYKKIIWEKINKD 60

Query: 61  YLQEQASKKQGCHVARAAAVVKKSTKRQRNSEAPTNNPAQADSEATREMLTKKRLSSKIN 120
           YLQEQA+KKQG  VA AA VVKKS KRQR  EA TN PA+AD+EATREMLTKKRLSSK+N
Sbjct: 61  YLQEQAAKKQGRDVAGAAHVVKKSKKRQRKKEAATNTPAEADTEATREMLTKKRLSSKVN 120

Query: 121 FDVLEELFSDVPASGSNKKQEASSCEENTSFEQSHGRNQLEEEEDPIDSNMAYEEDVDAE 180
           FDVL+ELFSD+P S SNKKQ AS+CEEN+SF+QSH R+   E+ DP   +   EEDVD E
Sbjct: 121 FDVLDELFSDMPVSCSNKKQGASNCEENSSFDQSHCRDL--EDNDP---HAVLEEDVDTE 180

Query: 181 DEDPTVTYGNEYYDFENEEEYGYGYDDY--DEEY 213
            EDPT TYGNEYYD ENEEEYG+ Y DY  DEEY
Sbjct: 181 HEDPTETYGNEYYDIENEEEYGHVYGDYGGDEEY 209

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BLAST of Sed0020965 vs. NCBI nr
Match: XP_023536162.1 (uncharacterized protein LOC111797407 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.8 bits (639), Expect = 1.1e-62
Identity = 141/214 (65.89%), Postives = 173/214 (80.84%), Query Frame = 0


Query: 1   MKSTDASLFNLFCKRKNKTSLSNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKD 60
           MK+ +ASLF++ C+ K++ S S+DESEDL D+LDSEVNSYLN K+E HYKKIIWEQ+NKD
Sbjct: 61  MKTAEASLFSVLCEHKDEDSSSDDESEDLGDVLDSEVNSYLNTKEEAHYKKIIWEQMNKD 120

Query: 61  YLQEQASKKQGCHVARAAAVVKKSTKRQRNSEAPTNNPAQADSEATREMLTKKRLSSKIN 120
           YLQEQA+KK+G  V  AAA+VKKS KRQR +EAP N PAQA+++ATREMLTKKRLSSK N
Sbjct: 121 YLQEQAAKKEGHDVVGAAAIVKKSKKRQRVTEAPINKPAQAETDATREMLTKKRLSSKFN 180

Query: 121 FDVLEELFSDVPASGSNKKQEASSCEENTSFEQSHGRNQLEEE---EDPIDSNMAYEEDV 180
           FDVL++LF+D PA  S+KKQEASS EEN+   Q+H  NQLEE+    + +D+ ++ E  +
Sbjct: 181 FDVLDKLFTDTPAPDSSKKQEASSFEENSLSAQNHSMNQLEEDLEGNNHVDT-ISEENAI 240

Query: 181 DAEDEDPTVTYGNEYYDFENEEEYGYGYDDYDEE 212
           D EDEDPT  YGNEYYD+ENEEEYGYGY DY  E
Sbjct: 241 DFEDEDPTEAYGNEYYDYENEEEYGYGYGDYGGE 273

[Close]

BLAST of Sed0020965 vs. NCBI nr
Match: XP_008444162.1 (PREDICTED: uncharacterized protein LOC103487591 isoform X2 [Cucumis melo] >TYK31660.1 transcription factor IIIB 90 kDa subunit-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 1.4e-62
Identity = 141/215 (65.58%), Postives = 172/215 (80.00%), Query Frame = 0


Query: 1   MKSTDASLFNLFCKRKNKTSLSNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKD 60
           MK  DASLF++F + K+K+S SND+SEDL D+ DSEVNSYLNN+KE HYKKIIWEQINKD
Sbjct: 1   MKPADASLFSMFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 61  YLQEQASKKQGCHVARAAAVVKKSTKRQRNSEAPTNNPAQADS-EATREMLTKKRLSSKI 120
           YLQ+QA+KKQG ++  AAAVVKKS KR+R  EAP N PAQAD+ E T EML KKRLSSK 
Sbjct: 61  YLQDQAAKKQGLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKF 120

Query: 121 NFDVLEELFSDVPASGSNKKQEASSCEENTSFEQSHGRNQLEEEEDPIDSNMAYEEDVDA 180
           +FDVL++L  D PA  S++KQ ASSC+EN+S  QSH  N+LE++ +   +   +EE++D 
Sbjct: 121 DFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDI 180

Query: 181 EDEDPTVTYGNEYYDFENEEEYGYGYDDY--DEEY 213
           E EDPT TYGNEYYDF+NEEEYGYGYDDY  +EEY
Sbjct: 181 EGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 215

[Close]

BLAST of Sed0020965 vs. NCBI nr
Match: XP_016899849.1 (PREDICTED: uncharacterized protein LOC103487591 isoform X1 [Cucumis melo])

HSP 1 Score: 245.7 bits (626), Expect = 3.5e-61
Identity = 141/216 (65.28%), Postives = 172/216 (79.63%), Query Frame = 0


Query: 1   MKSTDASLFNLFCKRKNKTSLSNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKD 60
           MK  DASLF++F + K+K+S SND+SEDL D+ DSEVNSYLNN+KE HYKKIIWEQINKD
Sbjct: 1   MKPADASLFSMFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 61  YLQEQASKKQGCHVARAAAVVKKSTK-RQRNSEAPTNNPAQADS-EATREMLTKKRLSSK 120
           YLQ+QA+KKQG ++  AAAVVKKS K R+R  EAP N PAQAD+ E T EML KKRLSSK
Sbjct: 61  YLQDQAAKKQGLNIVGAAAVVKKSKKQRKRKIEAPINKPAQADTEETTHEMLIKKRLSSK 120

Query: 121 INFDVLEELFSDVPASGSNKKQEASSCEENTSFEQSHGRNQLEEEEDPIDSNMAYEEDVD 180
            +FDVL++L  D PA  S++KQ ASSC+EN+S  QSH  N+LE++ +   +   +EE++D
Sbjct: 121 FDFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLD 180

Query: 181 AEDEDPTVTYGNEYYDFENEEEYGYGYDDY--DEEY 213
            E EDPT TYGNEYYDF+NEEEYGYGYDDY  +EEY
Sbjct: 181 IEGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 216

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BLAST of Sed0020965 vs. NCBI nr
Match: XP_022936233.1 (uncharacterized protein LOC111442904 [Cucurbita moschata])

HSP 1 Score: 244.6 bits (623), Expect = 7.8e-61
Identity = 138/214 (64.49%), Postives = 170/214 (79.44%), Query Frame = 0


Query: 1   MKSTDASLFNLFCKRKNKTSLSNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKD 60
           MK+ +ASLF+L CK K++ S S+DESEDL D+LDSEV +YLN K+E HYKKIIWEQ+NKD
Sbjct: 60  MKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEETHYKKIIWEQMNKD 119

Query: 61  YLQEQASKKQGCHVARAAAVVKKSTKRQRNSEAPTNNPAQADSEATREMLTKKRLSSKIN 120
           YLQEQA+KK+G  V  AAA+VKKS KRQR +EAP N PAQA+++ TRE+LTKKRLSSK N
Sbjct: 120 YLQEQAAKKEGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKKRLSSKFN 179

Query: 121 FDVLEELFSDVPASGSNKKQEASSCEENTSFEQSHGRNQLEEE---EDPIDSNMAYEEDV 180
           FDVL++LF+D PA  S+KKQEASS EEN+   Q+H  NQLEE+    + +D+ ++ E  +
Sbjct: 180 FDVLDKLFTDTPAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNHVDT-ISEENAI 239

Query: 181 DAEDEDPTVTYGNEYYDFENEEEYGYGYDDYDEE 212
           D EDEDP   YGNEYYD+ENEEEYGYGY DY  E
Sbjct: 240 DFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGE 272

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BLAST of Sed0020965 vs. ExPASy Swiss-Prot
Match: Q9P6R0 (Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=brf1 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 3.3e-06
Identity = 33/110 (30.00%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 23  NDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKDYLQEQASKKQGCHVARAAAVVK 82
           ++E   L D+ D E+   L +K E+  K  +W ++NKDYL E+ +K           +V+
Sbjct: 380 SEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMELNKDYLAEEEAKNLKLQEDLKKGIVR 439

Query: 83  KSTKRQRNSEAPTNNPAQAD--SEATREMLTKKRLSSKINFDVLEELFSD 131
           +  KR+R     + +   AD  +E+ +EM+ ++  S KIN++ L+ LF +
Sbjct: 440 QPRKRRRYRPRDSTSDGIADTAAESAKEMMQQRAFSKKINYEALDMLFDE 489

[Close]

BLAST of Sed0020965 vs. ExPASy Swiss-Prot
Match: Q92994 (Transcription factor IIIB 90 kDa subunit OS=Homo sapiens OX=9606 GN=BRF1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.7e-05
Identity = 45/134 (33.58%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 22  SNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKDYLQEQASKKQGCHVARAAAVV 81
           S D   DLS I D E++ Y+ N+ E   K  +W + N +YL+EQ  K+      +   + 
Sbjct: 442 SGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEKELGIY 501

Query: 82  -----KKSTKRQRNSEAPTNNPAQADSEATREMLTKKRLSSKINFDVLEELFSDVPASGS 141
                KKS KR+   +A T        EA  +ML +K++SSKIN+ VL  L S   A G 
Sbjct: 502 KEHKPKKSCKRREPIQASTAR------EAIEKMLEQKKISSKINYSVLRGLSS---AGGG 561

Query: 142 NKKQEASSCEENTS 151
           +  +E +  E + S
Sbjct: 562 SPHREDAQPEHSAS 566

[Close]

BLAST of Sed0020965 vs. ExPASy Swiss-Prot
Match: P29056 (Transcription factor IIIB 70 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BRF1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.1e-04
Identity = 41/140 (29.29%), Postives = 64/140 (45.71%), Query Frame = 0


Query: 23  NDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKDYLQEQASK--KQGCHVARAAAV 82
           +D+ ++L D+ D E+N++L N++    K+ IW  +N D+L EQ SK  KQ   +A     
Sbjct: 456 SDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATGNTS 515

Query: 83  VKKSTKRQRN---SEAPTNNPAQA-----------------------------DSEATRE 129
           VKK   R+RN   S+ PT     A                              +++ + 
Sbjct: 516 VKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTADSVKN 575

[Close]

BLAST of Sed0020965 vs. ExPASy TrEMBL
Match: A0A6J1CLW7 (transcription factor IIIB 90 kDa subunit-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012793 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.5e-65
Identity = 151/214 (70.56%), Postives = 175/214 (81.78%), Query Frame = 0


Query: 1   MKSTDASLFNLFCKRKNKTSLSNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKD 60
           M++ DASLF++F K K+K+S S+DESED+ DIL+SEVN YLNN+KE  YKKIIWE+INKD
Sbjct: 1   MRTKDASLFSMFFKXKDKSSPSDDESEDIGDILESEVNLYLNNEKEARYKKIIWEKINKD 60

Query: 61  YLQEQASKKQGCHVARAAAVVKKSTKRQRNSEAPTNNPAQADSEATREMLTKKRLSSKIN 120
           YLQEQA+KKQG  VA AA VVKKS KRQR  EA TN PA+AD+EATREMLTKKRLSSK+N
Sbjct: 61  YLQEQAAKKQGRDVAGAAHVVKKSKKRQRKKEAATNTPAEADTEATREMLTKKRLSSKVN 120

Query: 121 FDVLEELFSDVPASGSNKKQEASSCEENTSFEQSHGRNQLEEEEDPIDSNMAYEEDVDAE 180
           FDVL+ELFSD+P S SNKKQ AS+CEEN+SF+QSH R+   E+ DP   +   EEDVD E
Sbjct: 121 FDVLDELFSDMPVSCSNKKQGASNCEENSSFDQSHCRDL--EDNDP---HAVLEEDVDTE 180

Query: 181 DEDPTVTYGNEYYDFENEEEYGYGYDDY--DEEY 213
            EDPT TYGNEYYD ENEEEYG+ Y DY  DEEY
Sbjct: 181 HEDPTETYGNEYYDIENEEEYGHVYGDYGGDEEY 209

[Close]

BLAST of Sed0020965 vs. ExPASy TrEMBL
Match: A0A5D3E7S6 (Transcription factor IIIB 90 kDa subunit-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00100 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 6.8e-63
Identity = 141/215 (65.58%), Postives = 172/215 (80.00%), Query Frame = 0


Query: 1   MKSTDASLFNLFCKRKNKTSLSNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKD 60
           MK  DASLF++F + K+K+S SND+SEDL D+ DSEVNSYLNN+KE HYKKIIWEQINKD
Sbjct: 1   MKPADASLFSMFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 61  YLQEQASKKQGCHVARAAAVVKKSTKRQRNSEAPTNNPAQADS-EATREMLTKKRLSSKI 120
           YLQ+QA+KKQG ++  AAAVVKKS KR+R  EAP N PAQAD+ E T EML KKRLSSK 
Sbjct: 61  YLQDQAAKKQGLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKF 120

Query: 121 NFDVLEELFSDVPASGSNKKQEASSCEENTSFEQSHGRNQLEEEEDPIDSNMAYEEDVDA 180
           +FDVL++L  D PA  S++KQ ASSC+EN+S  QSH  N+LE++ +   +   +EE++D 
Sbjct: 121 DFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDI 180

Query: 181 EDEDPTVTYGNEYYDFENEEEYGYGYDDY--DEEY 213
           E EDPT TYGNEYYDF+NEEEYGYGYDDY  +EEY
Sbjct: 181 EGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 215

[Close]

BLAST of Sed0020965 vs. ExPASy TrEMBL
Match: A0A1S3B993 (uncharacterized protein LOC103487591 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487591 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 6.8e-63
Identity = 141/215 (65.58%), Postives = 172/215 (80.00%), Query Frame = 0


Query: 1   MKSTDASLFNLFCKRKNKTSLSNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKD 60
           MK  DASLF++F + K+K+S SND+SEDL D+ DSEVNSYLNN+KE HYKKIIWEQINKD
Sbjct: 1   MKPADASLFSMFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 61  YLQEQASKKQGCHVARAAAVVKKSTKRQRNSEAPTNNPAQADS-EATREMLTKKRLSSKI 120
           YLQ+QA+KKQG ++  AAAVVKKS KR+R  EAP N PAQAD+ E T EML KKRLSSK 
Sbjct: 61  YLQDQAAKKQGLNIVGAAAVVKKSKKRKRKIEAPINKPAQADTEETTHEMLIKKRLSSKF 120

Query: 121 NFDVLEELFSDVPASGSNKKQEASSCEENTSFEQSHGRNQLEEEEDPIDSNMAYEEDVDA 180
           +FDVL++L  D PA  S++KQ ASSC+EN+S  QSH  N+LE++ +   +   +EE++D 
Sbjct: 121 DFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLDI 180

Query: 181 EDEDPTVTYGNEYYDFENEEEYGYGYDDY--DEEY 213
           E EDPT TYGNEYYDF+NEEEYGYGYDDY  +EEY
Sbjct: 181 EGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 215

[Close]

BLAST of Sed0020965 vs. ExPASy TrEMBL
Match: A0A1S4DV37 (uncharacterized protein LOC103487591 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487591 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.7e-61
Identity = 141/216 (65.28%), Postives = 172/216 (79.63%), Query Frame = 0


Query: 1   MKSTDASLFNLFCKRKNKTSLSNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKD 60
           MK  DASLF++F + K+K+S SND+SEDL D+ DSEVNSYLNN+KE HYKKIIWEQINKD
Sbjct: 1   MKPADASLFSMFSRHKDKSSPSNDDSEDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKD 60

Query: 61  YLQEQASKKQGCHVARAAAVVKKSTK-RQRNSEAPTNNPAQADS-EATREMLTKKRLSSK 120
           YLQ+QA+KKQG ++  AAAVVKKS K R+R  EAP N PAQAD+ E T EML KKRLSSK
Sbjct: 61  YLQDQAAKKQGLNIVGAAAVVKKSKKQRKRKIEAPINKPAQADTEETTHEMLIKKRLSSK 120

Query: 121 INFDVLEELFSDVPASGSNKKQEASSCEENTSFEQSHGRNQLEEEEDPIDSNMAYEEDVD 180
            +FDVL++L  D PA  S++KQ ASSC+EN+S  QSH  N+LE++ +   +   +EE++D
Sbjct: 121 FDFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDNHTETVFEENLD 180

Query: 181 AEDEDPTVTYGNEYYDFENEEEYGYGYDDY--DEEY 213
            E EDPT TYGNEYYDF+NEEEYGYGYDDY  +EEY
Sbjct: 181 IEGEDPTETYGNEYYDFQNEEEYGYGYDDYGGEEEY 216

[Close]

BLAST of Sed0020965 vs. ExPASy TrEMBL
Match: A0A6J1FCP7 (uncharacterized protein LOC111442904 OS=Cucurbita moschata OX=3662 GN=LOC111442904 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 3.8e-61
Identity = 138/214 (64.49%), Postives = 170/214 (79.44%), Query Frame = 0


Query: 1   MKSTDASLFNLFCKRKNKTSLSNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKD 60
           MK+ +ASLF+L CK K++ S S+DESEDL D+LDSEV +YLN K+E HYKKIIWEQ+NKD
Sbjct: 60  MKTAEASLFSLLCKHKDEDSSSDDESEDLGDVLDSEVKTYLNTKEETHYKKIIWEQMNKD 119

Query: 61  YLQEQASKKQGCHVARAAAVVKKSTKRQRNSEAPTNNPAQADSEATREMLTKKRLSSKIN 120
           YLQEQA+KK+G  V  AAA+VKKS KRQR +EAP N PAQA+++ TRE+LTKKRLSSK N
Sbjct: 120 YLQEQAAKKEGHDVVGAAAIVKKSKKRQRITEAPINKPAQAETDTTREILTKKRLSSKFN 179

Query: 121 FDVLEELFSDVPASGSNKKQEASSCEENTSFEQSHGRNQLEEE---EDPIDSNMAYEEDV 180
           FDVL++LF+D PA  S+KKQEASS EEN+   Q+H  NQLEE+    + +D+ ++ E  +
Sbjct: 180 FDVLDKLFTDTPAPDSSKKQEASSFEENSLSTQNHSTNQLEEDLEGNNHVDT-ISEENAI 239

Query: 181 DAEDEDPTVTYGNEYYDFENEEEYGYGYDDYDEE 212
           D EDEDP   YGNEYYD+ENEEEYGYGY DY  E
Sbjct: 240 DFEDEDPPEAYGNEYYDYENEEEYGYGYGDYGGE 272

[Close]

BLAST of Sed0020965 vs. TAIR 10
Match: AT3G09360.1 (Cyclin/Brf1-like TBP-binding protein )

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-18
Identity = 75/210 (35.71%), Postives = 107/210 (50.95%), Query Frame = 0


Query: 22  SNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKDYLQEQASK------------- 81
           ++DES++ SDI D EVN Y+NN++E HYK I W ++NKDYL+EQA+K             
Sbjct: 392 TSDESDNFSDISDDEVNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKA 451

Query: 82  ---------KQGCHVARAAAVVKKSTKRQRNSEAPTN-NPAQADSEATREMLTKKRLSSK 141
                    ++    A+A A   +  K+Q+ +E   N  P     EA R  L KKRLSS 
Sbjct: 452 SNSNCPEDARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSV 511

Query: 142 INFDVLEELFSDVPASGSNKKQEASS-----CEEN---TSFEQSHGRNQLEEEEDPIDSN 201
           IN+DVLE LF       S K+ +  +      EEN    S E  +G N+ E+EED  + N
Sbjct: 512 INYDVLESLFDTSAPEKSPKRSKTETDIEKKKEENKEMKSNEHENGENEDEDEEDEEEGN 571

[Close]

BLAST of Sed0020965 vs. TAIR 10
Match: AT4G19550.1 (zinc ion binding;transcription regulators )

HSP 1 Score: 46.6 bits (109), Expect = 2.9e-05
Identity = 62/204 (30.39%), Postives = 95/204 (46.57%), Query Frame = 0


Query: 11  LFCKRKNKTSLSNDESEDLSDILDSEVNSYLNNKKEVHYKKIIWEQINKDYLQEQASKKQ 70
           +F  R++K     D +EDLSDI D+EV   L+N KE   KK  WE +N +Y + +  K  
Sbjct: 21  VFPSRQSK----GDLAEDLSDISDAEVAENLSNNKEFILKKRAWELMNPEYQKGKYRK-- 80

Query: 71  GCHVARAAAVVKKSTKRQRNSEAPTNNPAQADSEATREMLTKKRLSSKINFDVLEELFSD 130
                    V  +  K   N  AP+   +   +E+  E   KKR S +IN++VL++LF  
Sbjct: 81  ---------VTTRKKKDPANKIAPSKKTSATKTESNAETENKKRPSLEINYNVLDKLFD- 140

Query: 131 VPASGSNKKQEASSCEENTSFEQSHGRNQLEEEEDPIDSNMAYEEDVDAEDEDPTVTYGN 190
            P +   + +           E S    +   EE  + S  + EE+ +AE+ D    Y N
Sbjct: 141 -PENSPKRAKLDKPVVVGDQIEYS----KQNSEESLLKSQYSEEEEEEAEEPDWNEDYSN 200

Query: 191 EYYDFENEEEYG---YGYDDYDEE 212
           E     NEE YG     ++D D++
Sbjct: 201 EDAYRGNEECYGNENLEFEDLDDD 203

The following BLAST results are available for this feature:

BLAST of Sed0020965 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142780.1	5.2e-65	70.56	transcription factor IIIB 90 kDa subunit-like isoform X1 [Momordica charantia]	[more]
XP_023536162.1	1.1e-62	65.89	uncharacterized protein LOC111797407 [Cucurbita pepo subsp. pepo]	[more]
XP_008444162.1	1.4e-62	65.58	PREDICTED: uncharacterized protein LOC103487591 isoform X2 [Cucumis melo] >TYK31...	[more]
XP_016899849.1	3.5e-61	65.28	PREDICTED: uncharacterized protein LOC103487591 isoform X1 [Cucumis melo]	[more]
XP_022936233.1	7.8e-61	64.49	uncharacterized protein LOC111442904 [Cucurbita moschata]	[more]

BLAST of Sed0020965 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9P6R0	3.3e-06	30.00	Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe (strain 97...	[more]
Q92994	3.7e-05	33.58	Transcription factor IIIB 90 kDa subunit OS=Homo sapiens OX=9606 GN=BRF1 PE=1 SV...	[more]
P29056	3.1e-04	29.29	Transcription factor IIIB 70 kDa subunit OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of Sed0020965 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CLW7	2.5e-65	70.56	transcription factor IIIB 90 kDa subunit-like isoform X1 OS=Momordica charantia ...	[more]
A0A5D3E7S6	6.8e-63	65.58	Transcription factor IIIB 90 kDa subunit-like isoform X3 OS=Cucumis melo var. ma...	[more]
A0A1S3B993	6.8e-63	65.58	uncharacterized protein LOC103487591 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DV37	1.7e-61	65.28	uncharacterized protein LOC103487591 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1FCP7	3.8e-61	64.49	uncharacterized protein LOC111442904 OS=Cucurbita moschata OX=3662 GN=LOC1114429...	[more]

BLAST of Sed0020965 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09360.1	5.1e-18	35.71	Cyclin/Brf1-like TBP-binding protein	[more]
AT4G19550.1	2.9e-05	30.39	zinc ion binding;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011665	Brf1, TBP-binding domain	PFAM	PF07741	BRF1	coord: 30..129 e-value: 6.1E-25 score: 87.5
None	No IPR available	GENE3D	1.20.5.650	Single helix bin	coord: 8..71 e-value: 4.0E-18 score: 67.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..212
IPR029529	Transcription factor IIIB subunit Brf1	PANTHER	PTHR11618:SF4	TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT	coord: 21..132
IPR000812	Transcription factor TFIIB	PANTHER	PTHR11618	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	coord: 21..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020965.1	Sed0020965.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
biological_process	GO:0070897	transcription preinitiation complex assembly
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000126	transcription factor TFIIIB complex
molecular_function	GO:0000995	RNA polymerase III general transcription initiation factor activity