Sed0020938 (gene) Chayote v1

Overview


Name	Sed0020938
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA polymerase II transcriptional coactivator KELP
Location	LG07: 12054007 .. 12056355 (-)
RNA-Seq Expression	Sed0020938
Synteny	Sed0020938

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGCACATCAAATTTGTTTTCCCTAAACCGGAAAGCAAATTAGAGCTGAGCTCCCCTAAAAATTGGTGTGCTGAAATCCCACGCTCTGTCTCTACCAGAAATCGGCGGAGAATTCGGATGATGGATTCGGAAACGCAACGCAGAATCGAAGAATCGGTGCGGAAAATCCTTGAATCCTCAGACATGGAGGAGATGACGGAGTCCAAGATCCGAGCCCTGGCCTCCAAGGATCTCCATCTCGACCTCTCCAACCCCCCTTTCAAAGCTCTGGTTCGCACCGTCGTCAAATCCTTCCTCCAGGAACGATCGGAGGAGCAACAACCGCCGCCGCCGCAAGAGGAGGACCACGACGACGCCGGAGCAGCTGGAGCTACTAAGGAGTTCGACGACGATGGCGATCTTATTGTTTGTTGGGTTTGTGCATTCTTTCATTTCCTTTAATTTTGCTGCTTCTGATTCCTGCCTTTTGAGCTCTGGTTTTGTGTTCAATGCCGCAGTTGTCCAGCAAGAGGAAGGTTACCATTCAGGATTTCAGAGGGAAGACTCTGGTTTCGATTCGGGAGTTTTATAGAAAGGATGGCAGAGATCTCCCTACTTCTAAAGGTCATTTCTTGCGTTTGTCAAATTCTATATACTTTGCTGCAAATTGGGCCAACTTTTGCTGAAATTGACTCTTTATTTTCTATCATGTTGGTGAACTATTACTGAAATCAACACAATTATTGAGATATGGGAAATTTTGGGAAATTTGGGGGCGATAATATTAATTCAAATATGTATGCTAAAACGCTTTATTGATGTTTCATGAGCTATCACATTTGATATGTGATGTCTATGATGTAACCAATGTTCTAAAAGAATATCTTAAACATCACTAATAGGTTGAGTTATTCTATAAATTTGTGTCTTCCATGTTTTTAAAGAGTAAGTAGTAAAAGTACTAACTGTGATTCAAATTCTTGTATTTTTAAAGAACGAAGAAAATTATTATTGTTCTTCTAATTCTTATACGAGACCAGTGTTTTAAAAAGCGCAAGGCGCAATGACCCTCTAGAGCCTAAGGTGCACCAAAAGGCGAGGGCTTTTTTACTTAAGGCATACAAAATACAAAAAACTTATATATATGTGTACAATAAAAACACTTTTCCAAGACATGAATGAAGTTTTAACCAAAAATAATATATAAAACATACATAATATTCAACTATCAATCTTCACGCGCTTCGAATGACCTAGAATGGGGTTCTAAAACACAAAAAACACCAAGGAAATAAGAAAATCCCACGAGGCATGCGCCTTTTGGCGTCCAGGGCTTCACGTAAGGCGCCATAAGGGCGCGCGCCTCGCCTGGGACAACCGAGGCGCTAGAGGTGGGACTTGAGCCTAGGCGCACACCTGGGGCAGACTTTTTAAAACATTGTACAAGGCCTAGAGTCTTAAAGCCTTAATACTTTTTCATAGAGGAACTCTTGTGAGGGGCGCAACCCTCTTACAATCTTAAGAGGGCATGAACCCTCAAGACTAAAAATTAGACTTAGCTCCTGCCTCGAGGTTGAGCCTCAAGATGTAGCATAAACAGCTTTTACAACATTGGATATAAGCTTGTCCGTGTAACTCAAGTGAGGAACAGGGGTGATGTTTATAAAACCACTGCATGTTGATCATAACTCTCTTTTCCATGAACATATTCTTTTATAAGACTCATTTATTTTGTTCTTTTCTCATAAGAAGTTAAAGTAGGTCATTTTTTACTCTTTCAGATTAATAACATTGGTGGAACTTTTAAAAATTTCCTCAGGAATAAGCTTGACCGAGGAACAGTGGTCGATCTTTAGAAAGAGTGTACCTGACATAGAAAAAGCTATTAAGAATATGCAATCACGAACAACCTGAGGGTTGATGGTTTGAAGCCATGATGCTGTGTGCTTATGGAAGGTAGCTAGATTAATCACCATGAAAAAGGGAGAAAGGGGCTTTAGTTTTGGGAATTGCTGCAGTTTCTTGGTTGCAGAATGTTTTGGTATTTTGGTACTTCTGTTTTAGACCGCCCCAACATTCATAAAACTTCACAGTACCAATAATTTCTTAGCATCAAGGTGGACAAAAGTGGTACAAATTCACCATAACCAGAGCCCATAATGATTAATTGTCTCTTGTGTAATTGTTTTATGCTATAAAAACCCATGACATAACTATAAATGTGTGCTGCCTGAGTCATGACATTGAAGGTTAAATGTATCTTTGACATAGGCTGTGACTAAAATATGGCAGGCATTGGTGAATCTTTAGAAGATGTTTGTGAATTGTGCAGGTTTGGTTTTTGGAAAATGTTATCATGCTCTTACTTCA

mRNA sequence

TAGCACATCAAATTTGTTTTCCCTAAACCGGAAAGCAAATTAGAGCTGAGCTCCCCTAAAAATTGGTGTGCTGAAATCCCACGCTCTGTCTCTACCAGAAATCGGCGGAGAATTCGGATGATGGATTCGGAAACGCAACGCAGAATCGAAGAATCGGTGCGGAAAATCCTTGAATCCTCAGACATGGAGGAGATGACGGAGTCCAAGATCCGAGCCCTGGCCTCCAAGGATCTCCATCTCGACCTCTCCAACCCCCCTTTCAAAGCTCTGGTTCGCACCGTCGTCAAATCCTTCCTCCAGGAACGATCGGAGGAGCAACAACCGCCGCCGCCGCAAGAGGAGGACCACGACGACGCCGGAGCAGCTGGAGCTACTAAGGAGTTCGACGACGATGGCGATCTTATTGTTTGTTGGTTGTCCAGCAAGAGGAAGGTTACCATTCAGGATTTCAGAGGGAAGACTCTGGTTTCGATTCGGGAGTTTTATAGAAAGGATGGCAGAGATCTCCCTACTTCTAAAGGAATAAGCTTGACCGAGGAACAGTGGTCGATCTTTAGAAAGAGTGTACCTGACATAGAAAAAGCTATTAAGAATATGCAATCACGAACAACCTGAGGGTTGATGGTTTGAAGCCATGATGCTGTGTGCTTATGGAAGGTAGCTAGATTAATCACCATGAAAAAGGGAGAAAGGGGCTTTAGTTTTGGGAATTGCTGCAGTTTCTTGGTTGCAGAATGTTTTGGTATTTTGGTACTTCTGTTTTAGACCGCCCCAACATTCATAAAACTTCACAGTACCAATAATTTCTTAGCATCAAGGTGGACAAAAGTGGTACAAATTCACCATAACCAGAGCCCATAATGATTAATTGTCTCTTGTGTAATTGTTTTATGCTATAAAAACCCATGACATAACTATAAATGTGTGCTGCCTGAGTCATGACATTGAAGGTTAAATGTATCTTTGACATAGGCTGTGACTAAAATATGGCAGGCATTGGTGAATCTTTAGAAGATGTTTGTGAATTGTGCAGGTTTGGTTTTTGGAAAATGTTATCATGCTCTTACTTCA

Coding sequence (CDS)

ATGATGGATTCGGAAACGCAACGCAGAATCGAAGAATCGGTGCGGAAAATCCTTGAATCCTCAGACATGGAGGAGATGACGGAGTCCAAGATCCGAGCCCTGGCCTCCAAGGATCTCCATCTCGACCTCTCCAACCCCCCTTTCAAAGCTCTGGTTCGCACCGTCGTCAAATCCTTCCTCCAGGAACGATCGGAGGAGCAACAACCGCCGCCGCCGCAAGAGGAGGACCACGACGACGCCGGAGCAGCTGGAGCTACTAAGGAGTTCGACGACGATGGCGATCTTATTGTTTGTTGGTTGTCCAGCAAGAGGAAGGTTACCATTCAGGATTTCAGAGGGAAGACTCTGGTTTCGATTCGGGAGTTTTATAGAAAGGATGGCAGAGATCTCCCTACTTCTAAAGGAATAAGCTTGACCGAGGAACAGTGGTCGATCTTTAGAAAGAGTGTACCTGACATAGAAAAAGCTATTAAGAATATGCAATCACGAACAACCTGA

Protein sequence

MMDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFLQERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSRTT

Homology

[Close]

BLAST of Sed0020938 vs. NCBI nr
Match: XP_008451928.1 (PREDICTED: RNA polymerase II transcriptional coactivator KELP [Cucumis melo] >KAA0044928.1 RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa] >TYK16542.1 RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa])

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-60
Identity = 128/162 (79.01%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFLQ 61
           MDSETQRRIEE+VR+ILE+SDM+EMTESKIRALASKDL LDLS  P+K+LVRTVV+SFLQ
Sbjct: 1   MDSETQRRIEEAVRRILETSDMDEMTESKIRALASKDLDLDLSKSPYKSLVRTVVESFLQ 60

Query: 62  ERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 121
           ERSE+Q    PQ++  D   +A   KE+DDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE
Sbjct: 61  ERSEQQ----PQDQAED--ASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 120

Query: 122 FYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           FYRKDG+DLPT+KGISLTEEQWS+F+K+VP IEKAIKNMQS+
Sbjct: 121 FYRKDGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQ 156

[Close]

BLAST of Sed0020938 vs. NCBI nr
Match: XP_038878439.1 (RNA polymerase II transcriptional coactivator KELP-like [Benincasa hispida])

HSP 1 Score: 241.5 bits (615), Expect = 5.1e-60
Identity = 131/162 (80.86%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFLQ 61
           MDSE QRRIEE+VR+ILESSDM+EMTESKIRALASKDL LDLS  P+KALVR VV+SFLQ
Sbjct: 1   MDSEIQRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60

Query: 62  ERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 121
           ERSEEQ    PQ++  DDA AA   KE+DDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE
Sbjct: 61  ERSEEQ----PQDQ-ADDASAA-KEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 120

Query: 122 FYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           FYRKDG+DLPT+KGISLTEEQWS+F+K+VP IEKAIKNM+S+
Sbjct: 121 FYRKDGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMRSQ 156

[Close]

BLAST of Sed0020938 vs. NCBI nr
Match: XP_004148989.1 (RNA polymerase II transcriptional coactivator KELP [Cucumis sativus] >KGN53421.1 hypothetical protein Csa_014494 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 5.1e-60
Identity = 129/162 (79.63%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFLQ 61
           MDS+ QRRIEE+VR ILESSDM+EMTESKIRALASKDLHLDLS  P+K+LVRTVV+SFLQ
Sbjct: 1   MDSQLQRRIEEAVRAILESSDMDEMTESKIRALASKDLHLDLSKSPYKSLVRTVVESFLQ 60

Query: 62  ERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 121
           ERSE  Q P  Q ED     +A   KE+DDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE
Sbjct: 61  ERSE--QHPEDQPED----ASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 120

Query: 122 FYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           FYRKDG+DLPT+KGISLTEEQWS+F+K+VP IEKAIKNMQS+
Sbjct: 121 FYRKDGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQ 156

[Close]

BLAST of Sed0020938 vs. NCBI nr
Match: XP_022931551.1 (RNA polymerase II transcriptional coactivator KELP-like [Cucurbita moschata] >XP_023551821.1 RNA polymerase II transcriptional coactivator KELP-like [Cucurbita pepo subsp. pepo] >KAG6577134.1 RNA polymerase II transcriptional coactivator KELP, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015130.1 RNA polymerase II transcriptional coactivator KELP [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.1 bits (614), Expect = 6.7e-60
Identity = 129/162 (79.63%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFLQ 61
           MDSE QRRIEE+VR+ILESSDM+EMTESKIRALASKDL LDLS  P+KALVR VV+SFLQ
Sbjct: 1   MDSEIQRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60

Query: 62  ERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 121
           ERSE+Q    PQEE  D   +A   KE+DDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE
Sbjct: 61  ERSEDQ----PQEEAED--ASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 120

Query: 122 FYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           FYRKDG+DLPT+KGISLTEEQWS+F+ +VP IEKAIKNMQS+
Sbjct: 121 FYRKDGKDLPTAKGISLTEEQWSVFKNNVPAIEKAIKNMQSQ 156

[Close]

BLAST of Sed0020938 vs. NCBI nr
Match: XP_022985429.1 (RNA polymerase II transcriptional coactivator KELP-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 235.7 bits (600), Expect = 2.8e-58
Identity = 126/162 (77.78%), Postives = 144/162 (88.89%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFLQ 61
           MDS+ QRRIEE+VR+ILESSDM+EMTESKIRALASKDL LDLS  P+KALVR VV+SFLQ
Sbjct: 1   MDSKIQRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60

Query: 62  ERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 121
           +RSE+Q      +E+ +DA AA   KE+DDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE
Sbjct: 61  KRSEDQ-----LQEEAEDASAA-KEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 120

Query: 122 FYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           FYRKDG+DLPT+KGISLTEEQWS+F+ +VP IEKAIKNMQS+
Sbjct: 121 FYRKDGKDLPTAKGISLTEEQWSVFKNNVPAIEKAIKNMQSQ 156

[Close]

BLAST of Sed0020938 vs. ExPASy Swiss-Prot
Match: O65155 (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.6e-43
Identity = 93/164 (56.71%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFL- 61
           M+ ET+ +IE++V +IL  SDM+E+TE K+R LAS+ L +DLS    KA VR+VV+ FL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 62  QERSEEQQPPPPQEEDHD-DAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSI 121
           +ER+ E +     +E+ D D       KEFDDDGDLI+C LS KR+VTIQ+F+GK+LVSI
Sbjct: 61  EERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSI 120

Query: 122 REFYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           RE+Y+KDG++LPTSKGISLT+EQWS F+K++P IE A+K M+SR
Sbjct: 121 REYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESR 164

[Close]

BLAST of Sed0020938 vs. ExPASy Swiss-Prot
Match: O65154 (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=3702 GN=KIWI PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-12
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 61  QERSEEQQPPPPQEEDHDDA-GAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSI 120
           + + E+ +    + E H  A   A    + D   D++VC +S  R+V+++++ GK  + I
Sbjct: 6   KRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGKIWIDI 65

Query: 121 REFYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNM 161
           REFY KDG+ LP  KGISL+ +QW+  R    DIEKA+ ++
Sbjct: 66  REFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDL 106

[Close]

BLAST of Sed0020938 vs. ExPASy Swiss-Prot
Match: P53999 (Activated RNA polymerase II transcriptional coactivator p15 OS=Homo sapiens OX=9606 GN=SUB1 PE=1 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-07
Identity = 30/107 (28.04%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 55  VVKSFLQERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGK 114
           V K   +++    + P  +++  + + A  ++K+     D  +  +   R V+++DF+GK
Sbjct: 21  VDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGK 80

Query: 115 TLVSIREFYR-KDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNM 161
            L+ IRE++   +G   P  KGISL  EQWS  ++ + DI+ A++ +
Sbjct: 81  VLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127

[Close]

BLAST of Sed0020938 vs. ExPASy Swiss-Prot
Match: Q4R947 (Activated RNA polymerase II transcriptional coactivator p15 OS=Macaca fascicularis OX=9541 GN=SUB1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-07
Identity = 30/107 (28.04%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 55  VVKSFLQERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGK 114
           V K   +++    + P  +++  + + A  ++K+     D  +  +   R V+++DF+GK
Sbjct: 21  VDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGK 80

Query: 115 TLVSIREFYR-KDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNM 161
            L+ IRE++   +G   P  KGISL  EQWS  ++ + DI+ A++ +
Sbjct: 81  VLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127

[Close]

BLAST of Sed0020938 vs. ExPASy Swiss-Prot
Match: P11031 (Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus OX=10090 GN=Sub1 PE=1 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-07
Identity = 30/107 (28.04%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 55  VVKSFLQERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGK 114
           V K   +++    + P  +++  + + A  ++K+     D  +  +   R V+++DF+GK
Sbjct: 21  VEKKLKRKKQAVPEKPVKKQKPGETSRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGK 80

Query: 115 TLVSIREFYR-KDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNM 161
            L+ IRE++   +G   P  KGISL  EQWS  ++ + DI+ A++ +
Sbjct: 81  ILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAVRKL 127

[Close]

BLAST of Sed0020938 vs. ExPASy TrEMBL
Match: A0A5A7TPV6 (RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003580 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 8.5e-61
Identity = 128/162 (79.01%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFLQ 61
           MDSETQRRIEE+VR+ILE+SDM+EMTESKIRALASKDL LDLS  P+K+LVRTVV+SFLQ
Sbjct: 1   MDSETQRRIEEAVRRILETSDMDEMTESKIRALASKDLDLDLSKSPYKSLVRTVVESFLQ 60

Query: 62  ERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 121
           ERSE+Q    PQ++  D   +A   KE+DDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE
Sbjct: 61  ERSEQQ----PQDQAED--ASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 120

Query: 122 FYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           FYRKDG+DLPT+KGISLTEEQWS+F+K+VP IEKAIKNMQS+
Sbjct: 121 FYRKDGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQ 156

[Close]

BLAST of Sed0020938 vs. ExPASy TrEMBL
Match: A0A1S3BS20 (RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo OX=3656 GN=LOC103493081 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 8.5e-61
Identity = 128/162 (79.01%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFLQ 61
           MDSETQRRIEE+VR+ILE+SDM+EMTESKIRALASKDL LDLS  P+K+LVRTVV+SFLQ
Sbjct: 1   MDSETQRRIEEAVRRILETSDMDEMTESKIRALASKDLDLDLSKSPYKSLVRTVVESFLQ 60

Query: 62  ERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 121
           ERSE+Q    PQ++  D   +A   KE+DDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE
Sbjct: 61  ERSEQQ----PQDQAED--ASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 120

Query: 122 FYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           FYRKDG+DLPT+KGISLTEEQWS+F+K+VP IEKAIKNMQS+
Sbjct: 121 FYRKDGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQ 156

[Close]

BLAST of Sed0020938 vs. ExPASy TrEMBL
Match: A0A0A0KZW5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052710 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60
Identity = 129/162 (79.63%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFLQ 61
           MDS+ QRRIEE+VR ILESSDM+EMTESKIRALASKDLHLDLS  P+K+LVRTVV+SFLQ
Sbjct: 1   MDSQLQRRIEEAVRAILESSDMDEMTESKIRALASKDLHLDLSKSPYKSLVRTVVESFLQ 60

Query: 62  ERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 121
           ERSE  Q P  Q ED     +A   KE+DDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE
Sbjct: 61  ERSE--QHPEDQPED----ASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 120

Query: 122 FYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           FYRKDG+DLPT+KGISLTEEQWS+F+K+VP IEKAIKNMQS+
Sbjct: 121 FYRKDGKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQ 156

[Close]

BLAST of Sed0020938 vs. ExPASy TrEMBL
Match: A0A6J1ETY4 (RNA polymerase II transcriptional coactivator KELP-like OS=Cucurbita moschata OX=3662 GN=LOC111437695 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.2e-60
Identity = 129/162 (79.63%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFLQ 61
           MDSE QRRIEE+VR+ILESSDM+EMTESKIRALASKDL LDLS  P+KALVR VV+SFLQ
Sbjct: 1   MDSEIQRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60

Query: 62  ERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 121
           ERSE+Q    PQEE  D   +A   KE+DDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE
Sbjct: 61  ERSEDQ----PQEEAED--ASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 120

Query: 122 FYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           FYRKDG+DLPT+KGISLTEEQWS+F+ +VP IEKAIKNMQS+
Sbjct: 121 FYRKDGKDLPTAKGISLTEEQWSVFKNNVPAIEKAIKNMQSQ 156

[Close]

BLAST of Sed0020938 vs. ExPASy TrEMBL
Match: A0A6J1JD91 (RNA polymerase II transcriptional coactivator KELP-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111483435 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.4e-58
Identity = 126/162 (77.78%), Postives = 144/162 (88.89%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFLQ 61
           MDS+ QRRIEE+VR+ILESSDM+EMTESKIRALASKDL LDLS  P+KALVR VV+SFLQ
Sbjct: 1   MDSKIQRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60

Query: 62  ERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 121
           +RSE+Q      +E+ +DA AA   KE+DDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE
Sbjct: 61  KRSEDQ-----LQEEAEDASAA-KEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 120

Query: 122 FYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           FYRKDG+DLPT+KGISLTEEQWS+F+ +VP IEKAIKNMQS+
Sbjct: 121 FYRKDGKDLPTAKGISLTEEQWSVFKNNVPAIEKAIKNMQSQ 156

[Close]

BLAST of Sed0020938 vs. TAIR 10
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP) )

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-44
Identity = 93/164 (56.71%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFL- 61
           M+ ET+ +IE++V +IL  SDM+E+TE K+R LAS+ L +DLS    KA VR+VV+ FL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 62  QERSEEQQPPPPQEEDHD-DAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSI 121
           +ER+ E +     +E+ D D       KEFDDDGDLI+C LS KR+VTIQ+F+GK+LVSI
Sbjct: 61  EERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSI 120

Query: 122 REFYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           RE+Y+KDG++LPTSKGISLT+EQWS F+K++P IE A+K M+SR
Sbjct: 121 REYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESR 164

[Close]

BLAST of Sed0020938 vs. TAIR 10
Match: AT4G10920.2 (transcriptional coactivator p15 (PC4) family protein (KELP) )

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-44
Identity = 93/164 (56.71%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFL- 61
           M+ ET+ +IE++V +IL  SDM+E+TE K+R LAS+ L +DLS    KA VR+VV+ FL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 62  QERSEEQQPPPPQEEDHD-DAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSI 121
           +ER+ E +     +E+ D D       KEFDDDGDLI+C LS KR+VTIQ+F+GK+LVSI
Sbjct: 61  EERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSI 120

Query: 122 REFYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
           RE+Y+KDG++LPTSKGISLT+EQWS F+K++P IE A+K M+SR
Sbjct: 121 REYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESR 164

[Close]

BLAST of Sed0020938 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 55/162 (33.95%), Postives = 86/162 (53.09%), Query Frame = 0


Query: 2   MDSETQRRIEESVRKILESSDMEEMTESKIRALASKDLHLDLSNPPFKALVRTVVKSFLQ 61
           M+    ++IEE+V+ IL  SDM++MTE K+R  AS  L +DLS    K LVR V++ FL 
Sbjct: 12  MEIVATQKIEETVKSILSESDMDQMTEFKLRLDASAKLGIDLSGTNHKKLVRDVLEVFLL 71

Query: 62  ERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIRE 121
               E   P       ++  +  A     +D +  +C LS K+  T+Q +RG+  +SI  
Sbjct: 72  STPGEALVPETVAPAKNETVSVAAASVGGED-ERFICKLSEKQNATVQRYRGQPFLSIGS 131

Query: 122 FYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNMQSR 164
             ++ G+     +G  L+  QWS+ +K+   IE  IK  QS+
Sbjct: 132 --QEHGK---AFRGAHLSTNQWSVIKKNFAAIEDGIKQCQSK 167

[Close]

BLAST of Sed0020938 vs. TAIR 10
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-13
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 61  QERSEEQQPPPPQEEDHDDA-GAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSI 120
           + + E+ +    + E H  A   A    + D   D++VC +S  R+V+++++ GK  + I
Sbjct: 6   KRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGKIWIDI 65

Query: 121 REFYRKDGRDLPTSKGISLTEEQWSIFRKSVPDIEKAIKNM 161
           REFY KDG+ LP  KGISL+ +QW+  R    DIEKA+ ++
Sbjct: 66  REFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDL 106

[Close]

BLAST of Sed0020938 vs. TAIR 10
Match: AT5G09240.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-08
Identity = 31/102 (30.39%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 61  QERSEEQQPPPPQEEDHDDAGAAGATKEFDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIR 120
           + + E+ +    ++E    A      K  D+  D+ +C L   R+V +++  G+  ++IR
Sbjct: 6   KRKDEDVRASDDRDESETHAPPKKVAKPADEIEDIFICNLDKNRRVFVRNCNGRIWIAIR 65

Query: 121 EFYRKDGRDLP--TSKGISLTEEQWSIFRKSVPDIEKAIKNM 161
           +F+ KDG  LP  + +GISL+ EQW+  R    DI+KA+  +
Sbjct: 66  QFFVKDGITLPCNSKQGISLSLEQWNDLRNHEEDIDKALSEL 107

The following BLAST results are available for this feature:

BLAST of Sed0020938 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451928.1	1.8e-60	79.01	PREDICTED: RNA polymerase II transcriptional coactivator KELP [Cucumis melo] >KA...	[more]
XP_038878439.1	5.1e-60	80.86	RNA polymerase II transcriptional coactivator KELP-like [Benincasa hispida]	[more]
XP_004148989.1	5.1e-60	79.63	RNA polymerase II transcriptional coactivator KELP [Cucumis sativus] >KGN53421.1...	[more]
XP_022931551.1	6.7e-60	79.63	RNA polymerase II transcriptional coactivator KELP-like [Cucurbita moschata] >XP...	[more]
XP_022985429.1	2.8e-58	77.78	RNA polymerase II transcriptional coactivator KELP-like isoform X3 [Cucurbita ma...	[more]

BLAST of Sed0020938 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65155	2.6e-43	56.71	RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=37...	[more]
O65154	2.4e-12	36.63	RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=37...	[more]
P53999	5.2e-07	28.04	Activated RNA polymerase II transcriptional coactivator p15 OS=Homo sapiens OX=9...	[more]
Q4R947	5.2e-07	28.04	Activated RNA polymerase II transcriptional coactivator p15 OS=Macaca fascicular...	[more]
P11031	5.2e-07	28.04	Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus OX=1...	[more]

BLAST of Sed0020938 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TPV6	8.5e-61	79.01	RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa O...	[more]
A0A1S3BS20	8.5e-61	79.01	RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KZW5	2.5e-60	79.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052710 PE=3 SV=1	[more]
A0A6J1ETY4	3.2e-60	79.63	RNA polymerase II transcriptional coactivator KELP-like OS=Cucurbita moschata OX...	[more]
A0A6J1JD91	1.4e-58	77.78	RNA polymerase II transcriptional coactivator KELP-like isoform X3 OS=Cucurbita ...	[more]

BLAST of Sed0020938 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10920.1	1.9e-44	56.71	transcriptional coactivator p15 (PC4) family protein (KELP)	[more]
AT4G10920.2	1.9e-44	56.71	transcriptional coactivator p15 (PC4) family protein (KELP)	[more]
AT4G00980.1	1.6e-14	33.95	zinc knuckle (CCHC-type) family protein	[more]
AT5G09250.1	1.7e-13	36.63	ssDNA-binding transcriptional regulator	[more]
AT5G09240.1	1.7e-08	30.39	ssDNA-binding transcriptional regulator	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014876	DEK, C-terminal	PFAM	PF08766	DEK_C	coord: 6..60 e-value: 2.4E-10 score: 40.2
IPR003173	Transcriptional coactivator p15 (PC4), C-terminal	PFAM	PF02229	PC4	coord: 100..148 e-value: 1.1E-20 score: 73.0
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	2.30.31.10	Transcriptional Coactivator Pc4; Chain A	coord: 87..164 e-value: 6.6E-26 score: 91.7
IPR009044	ssDNA-binding transcriptional regulator	SUPERFAMILY	54447	ssDNA-binding transcriptional regulator domain	coord: 97..159
IPR017415	Putative RNA polymerase II transcriptional coactivator KELP	PIRSF	PIRSF038156	RNA_polymII_KELP	coord: 2..164 e-value: 5.5E-57 score: 190.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..88
None	No IPR available	PANTHER	PTHR13215:SF6	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP	coord: 4..163
IPR045125	RNA polymerase II transcriptional coactivator Sub1/Tcp4-like	PANTHER	PTHR13215	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	coord: 4..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020938.1	Sed0020938.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060261	positive regulation of transcription initiation from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription regulator complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003713	transcription coactivator activity