Sed0020931 (gene) Chayote v1

Overview


Name	Sed0020931
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein LATERAL ROOT PRIMORDIUM 1
Location	LG04: 38997949 .. 39001195 (+)
RNA-Seq Expression	Sed0020931
Synteny	Sed0020931

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTATTAGTTCCACTTCATCATCTGCTTCATCTTCTCCATTTCTCTCTTTCTCTCTCCTCTGTTACTGTGAATTTTGAGAGAAAATTCCATTCCACCAACACAATTCCCATTGCTTTCAATCTAAGAAATTTTATTCTAACCATTCGCCACAAATCTCAAACACCCTTTTCCGATTTCAATCCCCACAGCAATGTTGAGTCTCAGAGATGTTCTGTTAATCGCTCCGACCTCTTCTTCTCTTCACCCCCACACCCACATCCTTTCCTCCGATCCTTCCTCCGCCGCTCTCGGCGTCGGCGTCGGCATTTACCCACTTTTTGCGGCCGCCCCCTGTTTCCCGCCCCCCAATCACGCGCCGGAGGAACTCGCCGACGGCACCCGGAGTTTGGAGAATGTGAAAAGGACTCAAGATTTTGGGTTCGGGAAAGGGGATTCGCTCATCGGCGATAACTCCACGGCGGTTTGTAGGGACTGTGGAAACAGAGCAAAGAAGGAGTGCGAGTATCGCCGGTGCCGGACTTGCTGTAAGGGGCGTGGGAATCATTGCTCCACTCACGTGAAGAGCACGTGGGTTCCGGCGGCTCGCCGCCGTGAGCGGCAGACGTTGGTGGTGATGGACGGCGTCGCCACCAGTGCCGACGGTGGGTCCTCTGGCTCCTCCTCTGCCGGTGCGAAACGGCCTAGAGTTTTGATTCCTTCACAGAGCACTGCCGTCGCCGTCGCCTCCGCCGCCGCCGCCTCTCACGCTTCCACTTCCAATGGTACGAACCGACCGAGCTTTGAAACAACTTCTAACCATCAAGGTAAATCTCTACCGTTTTCATTTTATTTTGTTTCTTATTGAATTCTGAATCATCTGTTGCAATATTGAGATCTCTGTTTCTTTGTGTGTGTGTTATGATATGGTTATTTGTTTCTTGTGTTAGTGTCAGATTAATGCTTACATATAATGTTATTCAGTTTCAAATTTTCATTAGGAATCATAAAGATCTTTCAATAACTTTGAATATTTTGTTTAAGTAACTTAAATTTGTAACTATGCATATTCTTGTTGAAAAGTTTAGTTCCCATTTTATAACCATTTTGGTTTTTTATTTTGGTTTTTGAAATTTAACCCTACATTTATTTTATCATATGTTTTTTGTTATTTTGATATCTATATGTGTCCAAATCAAATTAAAAATTTGTTTTTATTTTTAAAAGTTGCTTGACATTTACGTCATTTCTTAAGAAAAGATAGATACATGGTATGAAAAGTAAAACATATGATAGAAAATTTGATTAATAACAGACTTAAATTTGAAAAATCAAAATATCAAACAGGCCTTAACAATCTTTTCGTGTCTTTCTTTGTTTTCCTCTTGATCTTAGTAGGAAAATGGGAATCTTAGTTTTTGTATAATGAGTTGAATTCAGTTGCTTTCATAATCATCATTAGTAGCTTAGTGGTCAAAAAGATATTAGAAGTCATGAAGTTGTGAGTTGGTTATGTACTTGGGAATTATTTTTCTATAGGATTTTTTAACATTCAAATGTTATAGTTCAATCGGTATGTTCTATGAGAATAGTCGAGTTTCATGTATGCTAGTTTCAACACTCACAAATAAAATAATAATAATAAATAGTTGCTGCCACGGCTAAAACATTGCATATATTCATTTTTCTTTCTCAAATCTATTCTGTTTCTTGATTACTTTCCTTTGAGGAGAGTAATTTAAAGATCTTTCAACAGCTTTGATCATTTTGTTGAACTTAAATATGTTCATAATACATATTCCTCATGTAGGTTTGTGAAAACCTTAGGTCTCGTTTGATAACCATTTGGTTTTTAAAATTTAAGCATATTTTTATTCAATTTCCTACACTATGTTTCATCTTTTCTACAATATATTCATCTTACCTTGAGAAAGTAGGTGAATGCTAACTAAATTTCAAAAACAAAAATAAACTTTTGGACGTTTTTTTTTTTTTTTAAATTTTAGTTTGGTTTTTAGAAATATAGGTAAGATGTAGATATCCAAGCAAGAAAAATTGTTATCAAACGGGACCTTAACCATCTTTTCATGTTTTTCTCTGTTTTCCTCTTGATCTTGGTGGGAAATGGGAGTCTTTTAGTTTTTGTACACTGAGTTGGATTCGGTTGCTTTCATAACCATCCTCCGTGACCTAGTGCTAAGAAAATATTAAGTGGTAAAAAAATATTAAGAAATCAAAAGGTAATTAATTTTTTTGCGAATTTCGTTGGCATTCAAATATTGTAGGGTTAGTCAGTATGTCTCGTGAGAATAATCGATGTGCATAAACCGGTGGGCACACTCACGAATGCAAAAAATTACAAAAAAAATTGCTTCTGTGGCTAACATTGCCTGTATTAACTTTTCTCCCTCAAATGTGTTCTGTTTCTTGATTACTTTCCTTGAGGAGAAGTGCTTTTTGTAAAACCACCTCTTGGAACGCTCATGGCTTTTGACAACAGATGCAAGCTTCAAGAAGTCGTTACCGGGGAAAGTTCGGGCTCCGGCCATGTTCCGGTTCCATAGAGTGACAGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAGTTGATGACAAAAATGCATTCCCATCTCTTTCACACCTTCATTTGGAAAGTGGTAACCATCACAGGGAATAGACACATTCCTCTTCTACTTTCTTGTCCAATTCTCCCTCCTGTGAATGGTTACCCGAAAACTCGATCTCGGCCCCTTCGGAAAGATCATATATCTTCTAGGGTTCAGTGATCTCTCTTATGCTATCTATAAGATCTATATAGTTACTTTTCATGCTGGTATTGCAATGAATGTGCACTAAATAGAACAAAAAAGAGCAAGAATTGTAATAGGATATTCTATTTTATAGTTTTCTAGCCTTGAAAGTTGGGGTTAGTGTAAAATTTCTCAAGTCCAATGATAGTTTGATACTGATCTTCTGTATATTGCTAAGATGTGTAACTTTCATCTATCCAAACTTCATTTATCATCTGCTAAAGCAAGCTAGTTGTGGATATGAGAGTTCAACCTCTTGTTTGATCGTCTATCTCGAAAAGTTTTACGATACCAATGTAATCGCTGCTGGTCTTCGAACAATAGAGCACCAGGCATCTTCTCATGATATGGTGGAACAGACCAGATGTATGCAATGTTACTTCTTTCTACATTACCATCTCC

mRNA sequence

TAATTATTAGTTCCACTTCATCATCTGCTTCATCTTCTCCATTTCTCTCTTTCTCTCTCCTCTGTTACTGTGAATTTTGAGAGAAAATTCCATTCCACCAACACAATTCCCATTGCTTTCAATCTAAGAAATTTTATTCTAACCATTCGCCACAAATCTCAAACACCCTTTTCCGATTTCAATCCCCACAGCAATGTTGAGTCTCAGAGATGTTCTGTTAATCGCTCCGACCTCTTCTTCTCTTCACCCCCACACCCACATCCTTTCCTCCGATCCTTCCTCCGCCGCTCTCGGCGTCGGCGTCGGCATTTACCCACTTTTTGCGGCCGCCCCCTGTTTCCCGCCCCCCAATCACGCGCCGGAGGAACTCGCCGACGGCACCCGGAGTTTGGAGAATGTGAAAAGGACTCAAGATTTTGGGTTCGGGAAAGGGGATTCGCTCATCGGCGATAACTCCACGGCGGTTTGTAGGGACTGTGGAAACAGAGCAAAGAAGGAGTGCGAGTATCGCCGGTGCCGGACTTGCTGTAAGGGGCGTGGGAATCATTGCTCCACTCACGTGAAGAGCACGTGGGTTCCGGCGGCTCGCCGCCGTGAGCGGCAGACGTTGGTGGTGATGGACGGCGTCGCCACCAGTGCCGACGGTGGGTCCTCTGGCTCCTCCTCTGCCGGTGCGAAACGGCCTAGAGTTTTGATTCCTTCACAGAGCACTGCCGTCGCCGTCGCCTCCGCCGCCGCCGCCTCTCACGCTTCCACTTCCAATGGTACGAACCGACCGAGCTTTGAAACAACTTCTAACCATCAAGATGCAAGCTTCAAGAAGTCGTTACCGGGGAAAGTTCGGGCTCCGGCCATGTTCCGGTTCCATAGAGTGACAGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAGTTGATGACAAAAATGCATTCCCATCTCTTTCACACCTTCATTTGGAAAGTGGTAACCATCACAGGGAATAGACACATTCCTCTTCTACTTTCTTGTCCAATTCTCCCTCCTGTGAATGGTTACCCGAAAACTCGATCTCGGCCCCTTCGGAAAGATCATATATCTTCTAGGGTTCAGTGATCTCTCTTATGCTATCTATAAGATCTATATAGTTACTTTTCATGCTGGTATTGCAATGAATGTGCACTAAATAGAACAAAAAAGAGCAAGAATTGTAATAGGATATTCTATTTTATAGTTTTCTAGCCTTGAAAGTTGGGGTTAGTGTAAAATTTCTCAAGTCCAATGATAGTTTGATACTGATCTTCTGTATATTGCTAAGATGTGTAACTTTCATCTATCCAAACTTCATTTATCATCTGCTAAAGCAAGCTAGTTGTGGATATGAGAGTTCAACCTCTTGTTTGATCGTCTATCTCGAAAAGTTTTACGATACCAATGTAATCGCTGCTGGTCTTCGAACAATAGAGCACCAGGCATCTTCTCATGATATGGTGGAACAGACCAGATGTATGCAATGTTACTTCTTTCTACATTACCATCTCC

Coding sequence (CDS)

ATGTTGAGTCTCAGAGATGTTCTGTTAATCGCTCCGACCTCTTCTTCTCTTCACCCCCACACCCACATCCTTTCCTCCGATCCTTCCTCCGCCGCTCTCGGCGTCGGCGTCGGCATTTACCCACTTTTTGCGGCCGCCCCCTGTTTCCCGCCCCCCAATCACGCGCCGGAGGAACTCGCCGACGGCACCCGGAGTTTGGAGAATGTGAAAAGGACTCAAGATTTTGGGTTCGGGAAAGGGGATTCGCTCATCGGCGATAACTCCACGGCGGTTTGTAGGGACTGTGGAAACAGAGCAAAGAAGGAGTGCGAGTATCGCCGGTGCCGGACTTGCTGTAAGGGGCGTGGGAATCATTGCTCCACTCACGTGAAGAGCACGTGGGTTCCGGCGGCTCGCCGCCGTGAGCGGCAGACGTTGGTGGTGATGGACGGCGTCGCCACCAGTGCCGACGGTGGGTCCTCTGGCTCCTCCTCTGCCGGTGCGAAACGGCCTAGAGTTTTGATTCCTTCACAGAGCACTGCCGTCGCCGTCGCCTCCGCCGCCGCCGCCTCTCACGCTTCCACTTCCAATGGTACGAACCGACCGAGCTTTGAAACAACTTCTAACCATCAAGATGCAAGCTTCAAGAAGTCGTTACCGGGGAAAGTTCGGGCTCCGGCCATGTTCCGGTTCCATAGAGTGACAGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAGTTGATGACAAAAATGCATTCCCATCTCTTTCACACCTTCATTTGGAAAGTGGTAACCATCACAGGGAATAG

Protein sequence

MLSLRDVLLIAPTSSSLHPHTHILSSDPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLENVKRTQDFGFGKGDSLIGDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHLESGNHHRE

Homology

[Close]

BLAST of Sed0020931 vs. NCBI nr
Match: XP_004142483.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN52321.1 hypothetical protein Csa_008495 [Cucumis sativus])

HSP 1 Score: 429.1 bits (1102), Expect = 2.9e-116
Identity = 232/310 (74.84%), Postives = 246/310 (79.35%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP- 60
           ML LRDVL IAPT SSLH  T I+SSD       PSS ALGV VGI+PL AA PC PP  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  ----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----------------GDNSTAVC 120
               NH P+++ D TR+ +N+KRTQDFGFGKG+SLI                GD S AVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKS 240
           GSSGSSSAGAKRPRVLIPSQ       SAAAA+ ASTSN T   SFETTS+HQDASFKKS
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQ-------SAAAAAAASTSNATTPRSFETTSSHQDASFKKS 240

Query: 241 LPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHL 282
           LPG VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKNAFPS+SHL
Sbjct: 241 LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 300

[Close]

BLAST of Sed0020931 vs. NCBI nr
Match: XP_008446964.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo])

HSP 1 Score: 429.1 bits (1102), Expect = 2.9e-116
Identity = 232/310 (74.84%), Postives = 246/310 (79.35%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP- 60
           ML LRDVL IAPT SSLH  T I+SSD       PSS ALGV VGI+PL AA PC PP  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  ----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----------------GDNSTAVC 120
               NH P+++ D TR+ +N+KRTQDFGFGKG+SLI                GD S AVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKS 240
           GSSGSSSAGAKRPRVLIPSQ       SAAAA+ ASTSN T   SFETTS+HQDASFKKS
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQ-------SAAAAAAASTSNATTPRSFETTSSHQDASFKKS 240

Query: 241 LPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHL 282
           LPG VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKNAFPS+SHL
Sbjct: 241 LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 300

[Close]

BLAST of Sed0020931 vs. NCBI nr
Match: XP_038892899.1 (protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida])

HSP 1 Score: 427.9 bits (1099), Expect = 6.6e-116
Identity = 231/309 (74.76%), Postives = 245/309 (79.29%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPP-- 60
           ML LRDVL IAPT SSLH  T I+SSD       PSSAALGV VGI+PL  A PC PP  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLTATPCLPPPQ 60

Query: 61  --PNHAPEELADGTRSLENVKRTQDFGFGKGDSLI----------------GDNSTAVCR 120
             PN   +++ D +RSLEN+KRTQDFGFGKGDSL+                GD S AVCR
Sbjct: 61  PLPNQTADDVTDRSRSLENLKRTQDFGFGKGDSLMGGAGNNVSDEQVKGDAGDGSMAVCR 120

Query: 121 DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGG 180
           DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DGG
Sbjct: 121 DCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGG 180

Query: 181 SSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSL 240
           SSGSSSAGAKRPRVLIPSQSTA A A       ASTSN T   SFETTS+HQDASFKKSL
Sbjct: 181 SSGSSSAGAKRPRVLIPSQSTAAAAA-------ASTSNATTPRSFETTSSHQDASFKKSL 240

Query: 241 PGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLH 282
           PG VRAPA+FR HRVTAI+SGEGELAYQATVNIGGHVFKGFLYDQG DDKNAFPS+SHLH
Sbjct: 241 PGHVRAPAVFRCHRVTAINSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLH 300

[Close]

BLAST of Sed0020931 vs. NCBI nr
Match: XP_022138928.1 (protein LATERAL ROOT PRIMORDIUM 1 [Momordica charantia])

HSP 1 Score: 419.1 bits (1076), Expect = 3.0e-113
Identity = 230/307 (74.92%), Postives = 247/307 (80.46%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPH-THILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP 60
           ML LRDVL IAPT SSLH   T I+SSD       PSSAALGV VGI+PL AA PC P P
Sbjct: 5   MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQP 64

Query: 61  NHAPEELADGT--RSLENVKRTQDFGFGKGDSLI---------------GDNSTAVCRDC 120
              P   A+ +  R ++N+KRTQDFGFGKGDSLI               GD+S  VCRDC
Sbjct: 65  PPPPPPAAEVSERRGVDNLKRTQDFGFGKGDSLIAGGNNALDEPVRGDAGDSSMGVCRDC 124

Query: 121 GNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSS 180
           GNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV AARRRERQ LVVMDGVAT S DGGSS
Sbjct: 125 GNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSS 184

Query: 181 GSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPG 240
           GSSSAGAKRPRVLIPSQST  A A+AA+ASHASTSN T   SFET+SNHQDASFKKSLPG
Sbjct: 185 GSSSAGAKRPRVLIPSQST--AAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPG 244

Query: 241 KVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHLE 282
           +VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG+DDKN FPS+SHLHLE
Sbjct: 245 QVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLE 304

[Close]

BLAST of Sed0020931 vs. NCBI nr
Match: KAA0034761.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa] >TYK09315.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa])

HSP 1 Score: 418.7 bits (1075), Expect = 4.0e-113
Identity = 232/326 (71.17%), Postives = 246/326 (75.46%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP- 60
           ML LRDVL IAPT SSLH  T I+SSD       PSS ALGV VGI+PL AA PC PP  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  ----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----------------GDNSTAVC 120
               NH P+++ D TR+ +N+KRTQDFGFGKG+SLI                GD S AVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQ------- 240
           GSSGSSSAGAKRPRVLIPSQ       SAAAA+ ASTSN T   SFETTS+HQ       
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQ-------SAAAAAAASTSNATTPRSFETTSSHQDQFLNPP 240

Query: 241 ---------DASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLY 282
                    DASFKKSLPG VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLY
Sbjct: 241 LGILMTLKPDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLY 300

[Close]

BLAST of Sed0020931 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.8e-50
Identity = 133/301 (44.19%), Postives = 170/301 (56.48%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPHTHILS-----SDPSSAALGVGVGIYPLFAAAPCFPPPNHA 60
           M+ LRDV L+AP     H +  ++S     +  ++AA  +GVG+ PL  A         +
Sbjct: 3   MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGVGVIPLLTAGTPQQNVEDS 62

Query: 61  PEELADGTRSLEN-----------VKRTQDFGFGKGDSLIGDNS----TAVCRDCGNRAK 120
                   R  +N            K T     G   +  G  S    TA C+DCGN+AK
Sbjct: 63  DINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGTATCQDCGNQAK 122

Query: 121 KECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAG 180
           KEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ +        +   GSS S+S+G
Sbjct: 123 KECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM----PTGANPTAGSSLSTSSG 182

Query: 181 AKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQD-ASFKKSLPGKVRAP 240
            K+PR++   Q          A SH STSN T   SFET+S+ QD    +++ PG+VRA 
Sbjct: 183 TKKPRIVGSQQQ-----QQQQATSHTSTSN-TPPQSFETSSSRQDGGGSREAWPGQVRAA 242

Query: 241 AMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHL-ESGNH 280
           A+F+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG++ K  FPS+S LHL  S N+
Sbjct: 243 AVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLHLGGSANN 291

[Close]

BLAST of Sed0020931 vs. ExPASy Swiss-Prot
Match: Q9M2U4 (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.5e-33
Identity = 83/190 (43.68%), Postives = 107/190 (56.32%), Query Frame = 0


Query: 84  IGDNSTA---VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLV 143
           + DN+T    VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R      
Sbjct: 30  VEDNNTVGEKVCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATR------ 89

Query: 144 VMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETT 203
                          SSS   ++ ++ I  QS+                   N     TT
Sbjct: 90  --------------SSSSPSERKKKLKIDKQSS------------------PNVSLLPTT 149

Query: 204 SNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGV 263
           ++ Q+  F++ LPGK+ APA+F+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  GV
Sbjct: 150 TSRQERGFREGLPGKIEAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGV 181

Query: 264 DDKNAFPSLS 270
           D   AFP LS
Sbjct: 210 DHNKAFPCLS 181

[Close]

BLAST of Sed0020931 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.8e-31
Identity = 80/171 (46.78%), Postives = 101/171 (59.06%), Query Frame = 0


Query: 89  TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATS 148
           T  CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M     S
Sbjct: 91  TISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHM-----S 150

Query: 149 ADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASF 208
             GG  GS S GA      IP +     +          TS+ +  PS        +ASF
Sbjct: 151 TSGGGGGSGSGGAGGGGSSIPKRHRDPTL--------PGTSSSSRLPSHSAGLEMGEASF 210

Query: 209 KKSLPGKVRAPAMFRFHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG 259
               PG+V + A+FR  +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG
Sbjct: 211 ----PGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQG 244

[Close]

BLAST of Sed0020931 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-27
Identity = 84/232 (36.21%), Postives = 112/232 (48.28%), Query Frame = 0


Query: 27  DPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLENVKRTQDFGFGKGDSLIGD 86
           D  S+A G+GVG            P NH   +++ G  S     R       +     G 
Sbjct: 92  DLYSSAAGLGVG------------PSNHNQFDIS-GETSTAGAGRAAAMMMIRSGGSGGG 151

Query: 87  NSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVA 146
           +    C+DCGN+AKK+C + RCRTCCK RG  CSTHV+STWVPAA+RRERQ  +      
Sbjct: 152 SGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQPQ 211

Query: 147 TSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDA 206
           T    G S       KR R  +P+ S+++      + S     N                
Sbjct: 212 TQLPRGES-----VPKRHRENLPATSSSLVCTRIPSHSGLEVGN---------------- 271

Query: 207 SFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG 259
                 P +V + A+FR  RV+++  GE E AYQ  V+IGGH+FKG LYD G
Sbjct: 272 -----FPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLG 284

[Close]

BLAST of Sed0020931 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.7e-27
Identity = 77/173 (44.51%), Postives = 102/173 (58.96%), Query Frame = 0


Query: 92  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADG 151
           C+DCGN++KK+C + RCRTCCK RG  C THVKSTWVPAA+RRERQ   +  G      G
Sbjct: 120 CQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQ-QLSTGQQPQQLG 179

Query: 152 GSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKS 211
           GS        KR R  IP++ST++A               T  PS   TS  +  +F   
Sbjct: 180 GSV------PKRQRERIPARSTSMAY--------------TRIPS-NNTSGLEVGNF--- 239

Query: 212 LPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNA 265
            P +V + A+FR  RV+++   E E AY+  V+IGGHVFKG LYDQG  ++++
Sbjct: 240 -PPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSS 266

[Close]

BLAST of Sed0020931 vs. ExPASy TrEMBL
Match: A0A0A0KWX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=3 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.4e-116
Identity = 232/310 (74.84%), Postives = 246/310 (79.35%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP- 60
           ML LRDVL IAPT SSLH  T I+SSD       PSS ALGV VGI+PL AA PC PP  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  ----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----------------GDNSTAVC 120
               NH P+++ D TR+ +N+KRTQDFGFGKG+SLI                GD S AVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKS 240
           GSSGSSSAGAKRPRVLIPSQ       SAAAA+ ASTSN T   SFETTS+HQDASFKKS
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQ-------SAAAAAAASTSNATTPRSFETTSSHQDASFKKS 240

Query: 241 LPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHL 282
           LPG VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKNAFPS+SHL
Sbjct: 241 LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 300

[Close]

BLAST of Sed0020931 vs. ExPASy TrEMBL
Match: A0A1S3BFS5 (protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=3 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.4e-116
Identity = 232/310 (74.84%), Postives = 246/310 (79.35%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP- 60
           ML LRDVL IAPT SSLH  T I+SSD       PSS ALGV VGI+PL AA PC PP  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  ----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----------------GDNSTAVC 120
               NH P+++ D TR+ +N+KRTQDFGFGKG+SLI                GD S AVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKS 240
           GSSGSSSAGAKRPRVLIPSQ       SAAAA+ ASTSN T   SFETTS+HQDASFKKS
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQ-------SAAAAAAASTSNATTPRSFETTSSHQDASFKKS 240

Query: 241 LPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHL 282
           LPG VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKNAFPS+SHL
Sbjct: 241 LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 300

[Close]

BLAST of Sed0020931 vs. ExPASy TrEMBL
Match: A0A6J1CEG6 (protein LATERAL ROOT PRIMORDIUM 1 OS=Momordica charantia OX=3673 GN=LOC111009988 PE=3 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.5e-113
Identity = 230/307 (74.92%), Postives = 247/307 (80.46%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPH-THILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP 60
           ML LRDVL IAPT SSLH   T I+SSD       PSSAALGV VGI+PL AA PC P P
Sbjct: 5   MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPQP 64

Query: 61  NHAPEELADGT--RSLENVKRTQDFGFGKGDSLI---------------GDNSTAVCRDC 120
              P   A+ +  R ++N+KRTQDFGFGKGDSLI               GD+S  VCRDC
Sbjct: 65  PPPPPPAAEVSERRGVDNLKRTQDFGFGKGDSLIAGGNNALDEPVRGDAGDSSMGVCRDC 124

Query: 121 GNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSS 180
           GNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV AARRRERQ LVVMDGVAT S DGGSS
Sbjct: 125 GNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDGGSS 184

Query: 181 GSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPG 240
           GSSSAGAKRPRVLIPSQST  A A+AA+ASHASTSN T   SFET+SNHQDASFKKSLPG
Sbjct: 185 GSSSAGAKRPRVLIPSQST--AAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLPG 244

Query: 241 KVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHLE 282
           +VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG+DDKN FPS+SHLHLE
Sbjct: 245 QVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHLE 304

[Close]

BLAST of Sed0020931 vs. ExPASy TrEMBL
Match: A0A5D3CCT8 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G003120 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.9e-113
Identity = 232/326 (71.17%), Postives = 246/326 (75.46%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP- 60
           ML LRDVL IAPT SSLH  T I+SSD       PSS ALGV VGI+PL AA PC PP  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  ----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----------------GDNSTAVC 120
               NH P+++ D TR+ +N+KRTQDFGFGKG+SLI                GD S AVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQ------- 240
           GSSGSSSAGAKRPRVLIPSQ       SAAAA+ ASTSN T   SFETTS+HQ       
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQ-------SAAAAAAASTSNATTPRSFETTSSHQDQFLNPP 240

Query: 241 ---------DASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLY 282
                    DASFKKSLPG VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLY
Sbjct: 241 LGILMTLKPDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLY 300

[Close]

BLAST of Sed0020931 vs. ExPASy TrEMBL
Match: A0A6J1GXY1 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111458506 PE=3 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 4.3e-113
Identity = 226/305 (74.10%), Postives = 242/305 (79.34%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCF-PPP 60
           ML LRDVL IAPT SSLH HT I+SSD       PSS ALGV VGI+PL AA PC  PPP
Sbjct: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP 60

Query: 61  NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----------------GDNSTAVCRDCG 120
           N  P+EL+D +RSLEN+KRTQDFGFGKGDSLI                GD S  VCRDCG
Sbjct: 61  NQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCG 120

Query: 121 NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGS 180
           NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQ LVVMDGVATS   GSSGS
Sbjct: 121 NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS---GSSGS 180

Query: 181 SSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKV 240
           SSAGAKRP+VLIPSQ+TA A A       ASTSN T   SFETTS+HQDASFKKSLPG+V
Sbjct: 181 SSAGAKRPKVLIPSQTTAAAAA-------ASTSNATTPRSFETTSSHQDASFKKSLPGQV 240

Query: 241 RAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHLESG 282
           +APA+F+ HRVTAISSGEGEL YQATVNIGGHVFKGFLYDQG D KNA PS+SHLHLESG
Sbjct: 241 QAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESG 295

[Close]

BLAST of Sed0020931 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 199.9 bits (507), Expect = 2.7e-51
Identity = 133/301 (44.19%), Postives = 170/301 (56.48%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPHTHILS-----SDPSSAALGVGVGIYPLFAAAPCFPPPNHA 60
           M+ LRDV L+AP     H +  ++S     +  ++AA  +GVG+ PL  A         +
Sbjct: 3   MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGVGVIPLLTAGTPQQNVEDS 62

Query: 61  PEELADGTRSLEN-----------VKRTQDFGFGKGDSLIGDNS----TAVCRDCGNRAK 120
                   R  +N            K T     G   +  G  S    TA C+DCGN+AK
Sbjct: 63  DINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGTATCQDCGNQAK 122

Query: 121 KECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAG 180
           KEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ +        +   GSS S+S+G
Sbjct: 123 KECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM----PTGANPTAGSSLSTSSG 182

Query: 181 AKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQD-ASFKKSLPGKVRAP 240
            K+PR++   Q          A SH STSN T   SFET+S+ QD    +++ PG+VRA 
Sbjct: 183 TKKPRIVGSQQQ-----QQQQATSHTSTSN-TPPQSFETSSSRQDGGGSREAWPGQVRAA 242

Query: 241 AMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHL-ESGNH 280
           A+F+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG++ K  FPS+S LHL  S N+
Sbjct: 243 AVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLHLGGSANN 291

[Close]

BLAST of Sed0020931 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 199.9 bits (507), Expect = 2.7e-51
Identity = 133/301 (44.19%), Postives = 170/301 (56.48%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPHTHILS-----SDPSSAALGVGVGIYPLFAAAPCFPPPNHA 60
           M+ LRDV L+AP     H +  ++S     +  ++AA  +GVG+ PL  A         +
Sbjct: 3   MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGVGVIPLLTAGTPQQNVEDS 62

Query: 61  PEELADGTRSLEN-----------VKRTQDFGFGKGDSLIGDNS----TAVCRDCGNRAK 120
                   R  +N            K T     G   +  G  S    TA C+DCGN+AK
Sbjct: 63  DINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGTATCQDCGNQAK 122

Query: 121 KECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAG 180
           KEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ +        +   GSS S+S+G
Sbjct: 123 KECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM----PTGANPTAGSSLSTSSG 182

Query: 181 AKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQD-ASFKKSLPGKVRAP 240
            K+PR++   Q          A SH STSN T   SFET+S+ QD    +++ PG+VRA 
Sbjct: 183 TKKPRIVGSQQQ-----QQQQATSHTSTSN-TPPQSFETSSSRQDGGGSREAWPGQVRAA 242

Query: 241 AMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHL-ESGNH 280
           A+F+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG++ K  FPS+S LHL  S N+
Sbjct: 243 AVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLHLGGSANN 291

[Close]

BLAST of Sed0020931 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 199.9 bits (507), Expect = 2.7e-51
Identity = 133/301 (44.19%), Postives = 170/301 (56.48%), Query Frame = 0


Query: 1   MLSLRDVLLIAPTSSSLHPHTHILS-----SDPSSAALGVGVGIYPLFAAAPCFPPPNHA 60
           M+ LRDV L+AP     H +  ++S     +  ++AA  +GVG+ PL  A         +
Sbjct: 90  MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGVGVIPLLTAGTPQQNVEDS 149

Query: 61  PEELADGTRSLEN-----------VKRTQDFGFGKGDSLIGDNS----TAVCRDCGNRAK 120
                   R  +N            K T     G   +  G  S    TA C+DCGN+AK
Sbjct: 150 DINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGTATCQDCGNQAK 209

Query: 121 KECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAG 180
           KEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ +        +   GSS S+S+G
Sbjct: 210 KECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM----PTGANPTAGSSLSTSSG 269

Query: 181 AKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQD-ASFKKSLPGKVRAP 240
            K+PR++   Q          A SH STSN T   SFET+S+ QD    +++ PG+VRA 
Sbjct: 270 TKKPRIVGSQQQ-----QQQQATSHTSTSN-TPPQSFETSSSRQDGGGSREAWPGQVRAA 329

Query: 241 AMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHL-ESGNH 280
           A+F+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG++ K  FPS+S LHL  S N+
Sbjct: 330 AVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLHLGGSANN 378

[Close]

BLAST of Sed0020931 vs. TAIR 10
Match: AT3G54430.1 (SHI-related sequence 6 )

HSP 1 Score: 142.9 bits (359), Expect = 3.9e-34
Identity = 83/190 (43.68%), Postives = 107/190 (56.32%), Query Frame = 0


Query: 84  IGDNSTA---VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLV 143
           + DN+T    VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R      
Sbjct: 30  VEDNNTVGEKVCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATR------ 89

Query: 144 VMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETT 203
                          SSS   ++ ++ I  QS+                   N     TT
Sbjct: 90  --------------SSSSPSERKKKLKIDKQSS------------------PNVSLLPTT 149

Query: 204 SNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGV 263
           ++ Q+  F++ LPGK+ APA+F+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  GV
Sbjct: 150 TSRQERGFREGLPGKIEAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGV 181

Query: 264 DDKNAFPSLS 270
           D   AFP LS
Sbjct: 210 DHNKAFPCLS 181

[Close]

BLAST of Sed0020931 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 136.0 bits (341), Expect = 4.8e-32
Identity = 80/171 (46.78%), Postives = 101/171 (59.06%), Query Frame = 0


Query: 89  TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATS 148
           T  CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M     S
Sbjct: 91  TISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHM-----S 150

Query: 149 ADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASF 208
             GG  GS S GA      IP +     +          TS+ +  PS        +ASF
Sbjct: 151 TSGGGGGSGSGGAGGGGSSIPKRHRDPTL--------PGTSSSSRLPSHSAGLEMGEASF 210

Query: 209 KKSLPGKVRAPAMFRFHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG 259
               PG+V + A+FR  +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG
Sbjct: 211 ----PGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQG 244

The following BLAST results are available for this feature:

BLAST of Sed0020931 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142483.1	2.9e-116	74.84	protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN52321.1 hypothetical pro...	[more]
XP_008446964.1	2.9e-116	74.84	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]	[more]
XP_038892899.1	6.6e-116	74.76	protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]	[more]
XP_022138928.1	3.0e-113	74.92	protein LATERAL ROOT PRIMORDIUM 1 [Momordica charantia]	[more]
KAA0034761.1	4.0e-113	71.17	protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa] >TYK09315.1 protein...	[more]

BLAST of Sed0020931 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	3.8e-50	44.19	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
Q9M2U4	5.5e-33	43.68	Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1	[more]
O65517	6.8e-31	46.78	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9SD40	1.6e-27	36.21	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9XGX0	7.7e-27	44.51	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]

BLAST of Sed0020931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX6	1.4e-116	74.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=3 SV=1	[more]
A0A1S3BFS5	1.4e-116	74.84	protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=3 S...	[more]
A0A6J1CEG6	1.5e-113	74.92	protein LATERAL ROOT PRIMORDIUM 1 OS=Momordica charantia OX=3673 GN=LOC111009988...	[more]
A0A5D3CCT8	1.9e-113	71.17	Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1GXY1	4.3e-113	74.10	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Sed0020931 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.2	2.7e-51	44.19	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	2.7e-51	44.19	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.4	2.7e-51	44.19	Lateral root primordium (LRP) protein-related	[more]
AT3G54430.1	3.9e-34	43.68	SHI-related sequence 6	[more]
AT4G36260.1	4.8e-32	46.78	Lateral root primordium (LRP) protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 91..133 e-value: 1.2E-24 score: 83.9
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 212..259 e-value: 8.9E-25 score: 84.4
None	No IPR available	PFAM	PF05142	DUF702	coord: 89..260 e-value: 4.0E-55 score: 186.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..212
None	No IPR available	PANTHER	PTHR31604:SF28	PROTEIN SHI RELATED SEQUENCE 6	coord: 1..274
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 1..274

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020931.1	Sed0020931.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding