Sed0020905 (gene) Chayote v1

Overview


Name	Sed0020905
Type	gene
Organism	Sechium edule (Chayote v1)
Description	GATA transcription factor 24-like
Location	LG06: 8463385 .. 8466668 (+)
RNA-Seq Expression	Sed0020905
Synteny	Sed0020905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGAATCGAACCCTAAAAACCCATTTGATCGAAGGTCATTTCTCGTTCTTTGATTTCTTCTTCTATTTTCTGACTATCTTCAATCATCGCCAATTTGAATTTCTCTGTTTCTTGTTGAGTATGTTTCTACTGATCTTCTTTTCGATTATCCGTCGTGTTTTGTTTGTTTCTAAGTTTCTTGGGGTTTTCTTTTTGGTTTCTTGTTGTATTAACTAACGTGTTCTAGGTCTTGTTATGTATGTTGTTGTAGAAGGAAGAAATGCCGAACTCCAATTCTCGAGACGGGATGGGCAATGTTAGCGACGAAGACAAGGACGGCGTTAAGGGCGGGGAAGATCCCATTCACAGCCCTCCGGTGCAGCCTGAAGAGCCCGGTGATGCTGATGGCCTTACGGTTGTTTACCAAGGGAATGTTTACTCTGTGTCGCCGGACAAGGTTTGAGTCTCAATTGTGTGTATTACTTGCATAACTATTAAAAAACTTGGATGTTTCTTGAATCTTGATGATGAATATGTGCTATTTCATCTTGCCGCGTTAAAGGATTTTCTGAAAATTTAGACAAGGGGTATAGTTTTATACCCTCTATTTTAGTTTCCTACTGAGATGTTGCTGTATTCTTGGGACTTGTCGTTCTTTTGAAAGCATCGGATTCTATCGAAACTCGATCGAACTCTCTACAGTTTAGCGTGCTTGGGCGGCAAGAGTAGTGTACTAAGTTAGGAGAGCTTGCTCATGTTACACCCTTTTTAACTCCATCTTAATAGCTTATAAAAATGTAAATGATGGAGGAACAGATTGTGGTGTGAGTTGAGCCTGAGATTATGGTTGTCATTGTCAAATTAGATTTAGGAGGCATTTGGTTAGTTTTCCACATATGTGATGCCATACTTTGACAATCAAGTACATGACTATGAACTTGAGAAGTTTTATGTGTTTTTCGTGGTTTAATTTGACAGGTGCAAGCCGCGCTTTCGATTTTAAGGGATATAGTTACTCCCGACATGCTTTCGATGTTAGGAAATATAGTTCCTGCTGGTAATCCTGATGTTGGAAGTGATCCCGTGAACCAACAGGTTTGTTTGAATGGTCTTCTACCCCACAGACACTTATTTAAATCATCACCTGTTGTTGATTTATCTGCAATGCTCATTTGTGTTATAATTCTTGTAGGGCACTGATGGCCTTCCTGTCCTAGAAAAGAGAAAAGAAAGCTTTCCGGAAGATGCTGCTCTCGGGTATACTATACATACCATTTTGTTTATATATTAGTAGATACAAATCCAAGAGCCCTTAGAAATGAAGAACACACACAGATTCTTCATTTATTTAGTTCTTGATCTTCTTTTTCTTGACGGTTTTGTTGTTGTCTGTTCTTCAATCAAGAGAGTTAGAAAGTGAAATGGGTTTTGTAGTTTTCCAAAAGGGTCTTTGTTGGATCTACTGAAAAGAGCACACTGGATTTTAAGGCCATGCTTAGTTTGCTCATAGCTCTTGTATGCTCTGTTTTTGAGTGTTTGAATTTCATGTATCATATTGGTTGTATGGTATTTTAATCAAATCTATCTACGTTTCATTTTCACTTGTGTGTGTATATTTGTTCTTCTTTGGAATGCTAGACCAAGTGTTGGAATGCTTTCCCATCTTATTGATACAGATCAAAATGTATCCATTAGTGAATTGTGTTTGAGGATCGAGTAATGATATGATTGTTCTTAGGGATAAAGTAGACATTAGATTTTTTTTTATATCCATAAGTGTCCAAGCCAGCTTGTGCGGACCTCGTCTATTGTCATGAACAATTCTCTGACCCTCCTTGATAGGTTGCCACAATGTATTTCACAATGTGTTGAAGTATAGCAGAAAGCATATGCTAGTGTACTTCTAAAGTTACAATTCTATTAATTCAATATTGTTTATGTTATGTGCAACTCAATGTGATATATATTCACCTCCTTCATAATCCAGAGTATACATACTAAATTACTTTCTTGCATTATTCCCATCTTATTGTCTGCTGCTCAACGTAGAATTTAAACTTTGCTATAATCAAATGTTCAGTTGTTCTAACAACTTCTGTCTGGATTTATCAGAATGCAGTTGAAGAAGGGAAAGTTTGTAGATGATGGTGAGGGCTCATCTTCAGGTTTGGCTCGAAGTCTGGATTCCGATCAAGATGACGGCTTGTTAGAAACTTCGTAAGTATTTGCGAAACTTACCCTCCAAATGTGCTATAGGATAGTATCAAAATGGAATATGAAATACTAAATAAATCTTGTCATTTATTTCAATTAGTAATATTGTCCTCCATTGTTCTTATGCAGATGTAAGCAGTGTGGAATCAGTTCAAAATCTACTATGATGCTTAGTGGACCAGATGGACCACAGACTCTATGCAATGCATGTGGACTGCTGTGGGACTCTAAGGTTTGCTTCTTAATCTATAATTATTTCCACTTCTTTAGGTACAGAGTTTTCTTTGGCTAAAATATGTACAGAGTTTTGGGAGCTTAATGATGGGGAAAACTATGGGGTGTTTAACTTTTCATTCTCAAATCAAATGTGTTTTTCAGTTAGTTGATAATGGTTTTAACTTTCTAGTTAGTTTTGCAGATCAATCTTGCTTTTTAGTTTTTTTTAATTGTAGCATCAAAATTTCTTAGTGGTTGCTACATTGATTGATATCCTTGATACATATTTCATAAGCCTTTTTATTGTGTTTGGTTTCTCCGAGATATATTAGTTCTTTAAATTACTAACTTTTTTGCATAAGAGAGTTCGACAATAATTAGAGGATTTGAATTCATGACCTCTAGAAACATAGATATGCCAGTTGCACTATTGTTTTTGTTGACTGAGCATAGCTCAACTGACATAAAAAAAAAACATGTGATCTCGGCTTAGAGGTTAGAAGTTCTGATCCCTCTCCTACATATGTTGAACTCAAAAACCCTATGCAAAAAAGGGAAAAAATCAAATGGTGTTTTCTGCAACTCAGATGAATCTGAAAGAGTGAAAATGTCTGTCTCTGATTTTGAACTTTCCATTTTTTTTTTTTTTTTTTTGTATCAGAGCAATGAAGAAGCTAAGGATTCAGATGCTTCAAAGAATGTGAGTGGTAAATAGGGCCCATAAACTCCAAAAGGTAGCTGTGTACAAAAATTGATGCTGGTTGTAGTAGAAAAGGAGCATTTGAGTATTCCAACAAATTGTATGGAAAAGTCTTAGCTGTAAATAGAGCACACTTTAGACAGTACATATAAGAACCAAAAAAACCATTTGTTA

mRNA sequence

TCTGAATCGAACCCTAAAAACCCATTTGATCGAAGAAGGAAGAAATGCCGAACTCCAATTCTCGAGACGGGATGGGCAATGTTAGCGACGAAGACAAGGACGGCGTTAAGGGCGGGGAAGATCCCATTCACAGCCCTCCGGTGCAGCCTGAAGAGCCCGGTGATGCTGATGGCCTTACGGTTGTTTACCAAGGGAATGTTTACTCTGTGTCGCCGGACAAGGTGCAAGCCGCGCTTTCGATTTTAAGGGATATAGTTACTCCCGACATGCTTTCGATGTTAGGAAATATAGTTCCTGCTGGTAATCCTGATGTTGGAAGTGATCCCGTGAACCAACAGGGCACTGATGGCCTTCCTGTCCTAGAAAAGAGAAAAGAAAGCTTTCCGGAAGATGCTGCTCTCGGAATGCAGTTGAAGAAGGGAAAGTTTGTAGATGATGGTGAGGGCTCATCTTCAGGTTTGGCTCGAAGTCTGGATTCCGATCAAGATGACGGCTTGTTAGAAACTTCATGTAAGCAGTGTGGAATCAGTTCAAAATCTACTATGATGCTTAGTGGACCAGATGGACCACAGACTCTATGCAATGCATGTGGACTGCTGTGGGACTCTAAGAGCAATGAAGAAGCTAAGGATTCAGATGCTTCAAAGAATGTGAGTGGTAAATAGGGCCCATAAACTCCAAAAGGTAGCTGTGTACAAAAATTGATGCTGGTTGTAGTAGAAAAGGAGCATTTGAGTATTCCAACAAATTGTATGGAAAAGTCTTAGCTGTAAATAGAGCACACTTTAGACAGTACATATAAGAACCAAAAAAACCATTTGTTA

Coding sequence (CDS)

ATGCCGAACTCCAATTCTCGAGACGGGATGGGCAATGTTAGCGACGAAGACAAGGACGGCGTTAAGGGCGGGGAAGATCCCATTCACAGCCCTCCGGTGCAGCCTGAAGAGCCCGGTGATGCTGATGGCCTTACGGTTGTTTACCAAGGGAATGTTTACTCTGTGTCGCCGGACAAGGTGCAAGCCGCGCTTTCGATTTTAAGGGATATAGTTACTCCCGACATGCTTTCGATGTTAGGAAATATAGTTCCTGCTGGTAATCCTGATGTTGGAAGTGATCCCGTGAACCAACAGGGCACTGATGGCCTTCCTGTCCTAGAAAAGAGAAAAGAAAGCTTTCCGGAAGATGCTGCTCTCGGAATGCAGTTGAAGAAGGGAAAGTTTGTAGATGATGGTGAGGGCTCATCTTCAGGTTTGGCTCGAAGTCTGGATTCCGATCAAGATGACGGCTTGTTAGAAACTTCATGTAAGCAGTGTGGAATCAGTTCAAAATCTACTATGATGCTTAGTGGACCAGATGGACCACAGACTCTATGCAATGCATGTGGACTGCTGTGGGACTCTAAGAGCAATGAAGAAGCTAAGGATTCAGATGCTTCAAAGAATGTGAGTGGTAAATAG

Protein sequence

MPNSNSRDGMGNVSDEDKDGVKGGEDPIHSPPVQPEEPGDADGLTVVYQGNVYSVSPDKVQAALSILRDIVTPDMLSMLGNIVPAGNPDVGSDPVNQQGTDGLPVLEKRKESFPEDAALGMQLKKGKFVDDGEGSSSGLARSLDSDQDDGLLETSCKQCGISSKSTMMLSGPDGPQTLCNACGLLWDSKSNEEAKDSDASKNVSGK

Homology

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BLAST of Sed0020905 vs. NCBI nr
Match: XP_022136698.1 (GATA transcription factor 19-like isoform X2 [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-29
Identity = 102/246 (41.46%), Postives = 130/246 (52.85%), Query Frame = 0


Query: 8   DGMGNVSDEDKDGVKGGEDPIHSPPVQPEEPG---------------------------- 67
           D + N   +++D V GGE+ I +P ++ E+ G                            
Sbjct: 24  DNIQNRVGDEEDDVTGGEESIDNPQMRFEDSGGISGSVSVMNRVQDIVPATYVSGSDYNP 83

Query: 68  ----DADGLTVVYQGNVY---SVSPDKVQAALSILRDIVTPDMLSMLGNIVPAGNPDVGS 127
                AD LT+ ++G VY   SVSPDKVQA L +L            G  +P+G P VG+
Sbjct: 84  LTGNGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLG-----------GYEIPSGIPAVGN 143

Query: 128 DPVNQQGTDGLPV--------------LEKRKE---------SFPEDAALGMQLKKGKF- 187
            P+NQQGTDGLP+               EKRKE         +  ++ AL MQ KKG+F 
Sbjct: 144 VPINQQGTDGLPIRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFI 203

Query: 188 ----VDDGEGSSSGLARSLDSDQDDGLLETSCKQCGISSKST-MMLSGPDGPQTLCNACG 190
               + DG GSSS LA++LDS QDDG+LETSC  CGISSKST MM  GP GP+TLCNACG
Sbjct: 204 SSKAISDGVGSSSVLAQTLDSGQDDGMLETSCTHCGISSKSTPMMRRGPAGPRTLCNACG 258

[Close]

BLAST of Sed0020905 vs. NCBI nr
Match: XP_022988859.1 (GATA transcription factor 24-like [Cucurbita maxima])

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-29
Identity = 94/183 (51.37%), Postives = 108/183 (59.02%), Query Frame = 0


Query: 39  GDADGLTVVYQGNVY---SVSPDKVQAALSILRDIVTPDMLSMLGNIVPAGNPDVGSDPV 98
           G AD LT+ ++G VY   SVSPDKVQA L +L            G  VP+G P VGS PV
Sbjct: 88  GGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLG-----------GYEVPSGIPAVGSIPV 147

Query: 99  NQQGTDGLPV--------------LEKRKE---------SFPEDAALGMQLKKGKFVD-- 158
           NQQG DG PV               EKRKE         +  ++ AL MQ KKG+F+   
Sbjct: 148 NQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSK 207

Query: 159 ---DGEGSSSGLARSLDSDQDDGLLETSCKQCGISSKST-MMLSGPDGPQTLCNACGLLW 190
              D EGSSS LA +LDS QDDGLLETSC  CG+SSKST MM  GP GP+TLCNACGL W
Sbjct: 208 AIPDEEGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKW 259

[Close]

BLAST of Sed0020905 vs. NCBI nr
Match: XP_038887962.1 (GATA transcription factor 19-like [Benincasa hispida] >XP_038887963.1 GATA transcription factor 19-like [Benincasa hispida])

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-28
Identity = 111/271 (40.96%), Postives = 134/271 (49.45%), Query Frame = 0


Query: 1   MPNSNSRDGM-----------------GNVSDEDKDGVKGGEDPIHSPPVQPEEP----- 60
           MPNSN +D M                   V DED D + GGE+ I +P ++ E+      
Sbjct: 1   MPNSNFQDAMYGSGVMNNGGRDLDSIQNRVGDED-DDINGGEESIDNPQMRFEDSGGMSG 60

Query: 61  ----------------------------GDADGLTVVYQGNVY---SVSPDKVQAALSIL 120
                                       G AD LT+ ++G+VY   SVSPDKVQA L +L
Sbjct: 61  SVAVMNRVQDVVPSAYVSGSDYNPLTGNGGADQLTLSFRGDVYAFDSVSPDKVQAVLLLL 120

Query: 121 RDIVTPDMLSMLGNIVPAGNPDVGSDPVNQQGTDGLPV--------------LEKRKE-- 180
                       G  +P+G P VGS PVNQQGTDG PV               EKRKE  
Sbjct: 121 G-----------GYELPSGIPAVGSVPVNQQGTDGFPVRSVQPQRAASLSRFREKRKERC 180

Query: 181 -------SFPEDAALGMQLKKGKFVD-----DGEGSSSGLARSLDSDQDDGLLETSCKQC 190
                  S  ++ AL MQ KKG+F+      D  GSSS L+++LDS QDDGLLETSC  C
Sbjct: 181 FEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHC 240

[Close]

BLAST of Sed0020905 vs. NCBI nr
Match: XP_008455162.1 (PREDICTED: GATA transcription factor 24-like isoform X1 [Cucumis melo] >XP_008455163.1 PREDICTED: GATA transcription factor 24-like isoform X1 [Cucumis melo])

HSP 1 Score: 135.6 bits (340), Expect = 4.9e-28
Identity = 107/270 (39.63%), Postives = 134/270 (49.63%), Query Frame = 0


Query: 1   MPNSNSRDGM-------------GNVS---DEDKDGVKGGEDPIHSPPVQPEEP------ 60
           MP+SN +D M             GN+    D++ D + GGE+ I +P ++ E+       
Sbjct: 1   MPDSNFQDAMYGSGVMNDGGRDLGNIQNRVDDEDDDINGGEESIDNPQMRFEDSGGMSGS 60

Query: 61  ---------------------------GDADGLTVVYQGNVY---SVSPDKVQAALSILR 120
                                      G AD LT+ ++G VY   SVSPDKVQA L +L 
Sbjct: 61  VSVISRVEDVVPSTYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLG 120

Query: 121 DIVTPDMLSMLGNIVPAGNPDVGSDPVNQQGTDGLPV--------------LEKRKE--- 180
                      G  +P+G P +GS PVNQQG DG PV               EKRKE   
Sbjct: 121 -----------GYEIPSGIPAIGSVPVNQQGADGFPVRSVQPQRAASLSRFREKRKERCF 180

Query: 181 ------SFPEDAALGMQLKKGKFVD-----DGEGSSSGLARSLDSDQDDGLLETSCKQCG 190
                 S  ++ AL MQ KKG+F+      D  GSSS L+++LDS QDDGLLETSC  CG
Sbjct: 181 EKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCG 240

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BLAST of Sed0020905 vs. NCBI nr
Match: XP_022927910.1 (GATA transcription factor 24-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 135.6 bits (340), Expect = 4.9e-28
Identity = 101/221 (45.70%), Postives = 118/221 (53.39%), Query Frame = 0


Query: 39  GDADGLTVVYQGNVY---SVSPDKVQAALSILRDIVTPDMLSMLGNIVPAGNPDVGSDPV 98
           G AD LT+ ++G VY   SVSPDKVQA L +L            G  VP+G P VGS PV
Sbjct: 103 GGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLG-----------GYEVPSGIPAVGSIPV 162

Query: 99  NQQGTDGLPV--------------LEKRKE---------SFPEDAALGMQLKKGKFVD-- 158
           NQQG DG PV               EKRKE         +  ++ AL MQ KKG+F+   
Sbjct: 163 NQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSK 222

Query: 159 ---DGEGSSSGLARSLDSDQDDGLLETSCKQCGISSKST-MMLSGPDGPQTLCNACGLLW 204
              D  GSSS LA +LDS QDDGLLETSC  CG+SSKST MM  GP GP+TLCNACGL W
Sbjct: 223 ASADEVGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKW 282

[Close]

BLAST of Sed0020905 vs. ExPASy Swiss-Prot
Match: Q10F25 (GATA transcription factor 18 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA18 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-16
Identity = 77/207 (37.20%), Postives = 108/207 (52.17%), Query Frame = 0


Query: 15  DEDKDG----VKGGEDPIHSPPVQPEEPGDADGLTVVYQGNVY---SVSPDKVQAALSIL 74
           D+D++G    +   EDP    PV    PG  + LT+++QG VY   SV+P+KVQA L +L
Sbjct: 48  DDDEEGDEEELPPAEDPAAPEPVSALLPGSPNQLTLLFQGEVYVFESVTPEKVQAVLLLL 107

Query: 75  -RDIVTPDMLSMLGNIVPAGNPDVGSDPVNQQGTDGLPV---------LEKRKE------ 134
            R  + P + +M   ++P    + G D + Q+ TD +P           EKRKE      
Sbjct: 108 GRSEMPPGLANM---VLPNQRENRGYDDLLQR-TD-IPAKRVASLIRFREKRKERNFDKK 167

Query: 135 ---SFPEDAALGMQLKKGKFVD----DGEGSSSGL-ARSLDSDQDDGLLETSCKQCGISS 190
              +  ++ AL MQ +KG+F      +GE  S G    S  S QD    E+ C+ CG S 
Sbjct: 168 IRYAVRKEVALRMQRRKGQFAGRANMEGESLSPGCELASQGSGQDFLSRESKCQNCGTSE 227

[Close]

BLAST of Sed0020905 vs. ExPASy Swiss-Prot
Match: A2XKR7 (GATA transcription factor 18 OS=Oryza sativa subsp. indica OX=39946 GN=GATA18 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-15
Identity = 81/223 (36.32%), Postives = 112/223 (50.22%), Query Frame = 0


Query: 3   NSNSRDG-MGNVSDEDKDGVKGG--------EDPIHSPPVQPEEPGDADGLTVVYQGNVY 62
           ++N  DG  G   DE++D  + G        EDP    PV    PG  + LT+++QG VY
Sbjct: 31  DNNDDDGDDGTEEDEEEDDDEEGDEEELPPAEDPAAPEPVSALLPGSPNQLTLLFQGEVY 90

Query: 63  ---SVSPDKVQAALSILRDIVTPDMLSMLGNIVPAGNPDVGSDPVNQQGTDGLPV----- 122
              SV+P+KVQA L +L     P  L+ +  ++P    + G D + Q+ TD +P      
Sbjct: 91  VFESVTPEKVQAVLLLLGSCEMPPGLANM--VLPNQRENRGYDDLLQR-TD-IPAKRVAS 150

Query: 123 ----LEKRKE---------SFPEDAALGMQLKKGKFVD----DGEGSSSGL-ARSLDSDQ 182
                EKRKE         +  ++ AL MQ +KG+F      +GE  S G    S  S Q
Sbjct: 151 LIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRANMEGESLSPGCELASQGSGQ 210

Query: 183 DDGLLETSCKQCGISSKST-MMLSGPDGPQTLCNACGLLWDSK 190
           D    E+ C+ CG S K T  M  GP GP+TLCNACGL+W +K
Sbjct: 211 DFLSRESKCQNCGTSEKMTPAMRRGPAGPRTLCNACGLMWANK 249

[Close]

BLAST of Sed0020905 vs. ExPASy Swiss-Prot
Match: Q0DNU1 (GATA transcription factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA19 PE=2 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-14
Identity = 68/193 (35.23%), Postives = 98/193 (50.78%), Query Frame = 0


Query: 15  DEDKDGVKGGEDPIHSPPVQPEEPGDADGLTVVYQGNVY---SVSPDKVQAALSIL-RDI 74
           D   D    G+  + S   +      ++ LT+VYQG VY    V P KVQA L +L    
Sbjct: 11  DPPADDGAAGDGAVESAAAEALLSAASEQLTLVYQGEVYVFDPVPPQKVQAVLLVLGGSD 70

Query: 75  VTPDMLSMLGNIVPAGNPDVGSDPVNQQGTDGLPVLEKRKE---------SFPEDAALGM 134
           + P ++SM    VP    +  +    ++    +   EKRKE         S  ++ A  M
Sbjct: 71  MPPGLVSM---AVPTTFDEKSTTVAARRVASLMRFREKRKERCFDKKIRYSVRKEVAQKM 130

Query: 135 QLKKGKF---VDDGEGS-SSGLARSLDSDQDDGLLETSCKQCGISSKST-MMLSGPDGPQ 190
           + +KG+F    D G+GS SS    S  + +DD + ET C+ CGISS+ T  M  GP GP+
Sbjct: 131 KRRKGQFAGRADFGDGSCSSAPCGSTANGEDDHIRETHCQNCGISSRLTPAMRRGPAGPR 190

[Close]

BLAST of Sed0020905 vs. ExPASy Swiss-Prot
Match: B8AR30 (GATA transcription factor 19 OS=Oryza sativa subsp. indica OX=39946 GN=GATA19 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-14
Identity = 68/193 (35.23%), Postives = 98/193 (50.78%), Query Frame = 0


Query: 15  DEDKDGVKGGEDPIHSPPVQPEEPGDADGLTVVYQGNVY---SVSPDKVQAALSIL-RDI 74
           D   D    G+  + S   +      ++ LT+VYQG VY    V P KVQA L +L    
Sbjct: 11  DPPADDGAAGDGAVESAAAEALLSAASEQLTLVYQGEVYVFDPVPPQKVQAVLLVLGGSD 70

Query: 75  VTPDMLSMLGNIVPAGNPDVGSDPVNQQGTDGLPVLEKRKE---------SFPEDAALGM 134
           + P ++SM    VP    +  +    ++    +   EKRKE         S  ++ A  M
Sbjct: 71  MPPGLVSM---AVPTTFDEKSTTVAARRIASLMRFREKRKERCFDKKIRYSVRKEVAQKM 130

Query: 135 QLKKGKF---VDDGEGS-SSGLARSLDSDQDDGLLETSCKQCGISSKST-MMLSGPDGPQ 190
           + +KG+F    D G+GS SS    S  + +DD + ET C+ CGISS+ T  M  GP GP+
Sbjct: 131 KRRKGQFAGRADFGDGSCSSAPCGSTANGEDDHIRETHCQNCGISSRLTPAMRRGPAGPR 190

[Close]

BLAST of Sed0020905 vs. ExPASy Swiss-Prot
Match: Q8GXL7 (GATA transcription factor 24 OS=Arabidopsis thaliana OX=3702 GN=GATA24 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 8.8e-12
Identity = 77/215 (35.81%), Postives = 99/215 (46.05%), Query Frame = 0


Query: 5   NSRDGMGNVSDEDKDGVKGGEDPIHSPPVQPEEPGDADGLTVVYQGNVY---SVSPDKVQ 64
           NS D  G V D    G++ G                 D LT+ +QG VY    VSP+KVQ
Sbjct: 61  NSADNRGEVVDR---GIENG-----------------DQLTLSFQGQVYVFDRVSPEKVQ 120

Query: 65  AALSILRDIVTPDML-SMLGN-------IVPAGNPDVGSDPVNQQGTDGLPVLEKRK--- 124
           A L +L     P  L + LG+       +  +G P   S P  Q+    L   EKRK   
Sbjct: 121 AVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRLSVP--QRLASLLRFREKRKGRN 180

Query: 125 ------ESFPEDAALGMQLKKGKFV-----DDGEGSSSGLARSLDSDQDDGL----LETS 184
                  +  ++ AL MQ KKG+F      +D  GS+     S  S   +G      E  
Sbjct: 181 FDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVL 240

Query: 185 CKQCGISSKST-MMLSGPDGPQTLCNACGLLWDSK 190
           C+ CG S KST MM  GPDGP+TLCNACGL+W +K
Sbjct: 241 CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANK 253

[Close]

BLAST of Sed0020905 vs. ExPASy TrEMBL
Match: A0A6J1JMS2 (GATA transcription factor 24-like OS=Cucurbita maxima OX=3661 GN=LOC111486083 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-29
Identity = 94/183 (51.37%), Postives = 108/183 (59.02%), Query Frame = 0


Query: 39  GDADGLTVVYQGNVY---SVSPDKVQAALSILRDIVTPDMLSMLGNIVPAGNPDVGSDPV 98
           G AD LT+ ++G VY   SVSPDKVQA L +L            G  VP+G P VGS PV
Sbjct: 88  GGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLG-----------GYEVPSGIPAVGSIPV 147

Query: 99  NQQGTDGLPV--------------LEKRKE---------SFPEDAALGMQLKKGKFVD-- 158
           NQQG DG PV               EKRKE         +  ++ AL MQ KKG+F+   
Sbjct: 148 NQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSK 207

Query: 159 ---DGEGSSSGLARSLDSDQDDGLLETSCKQCGISSKST-MMLSGPDGPQTLCNACGLLW 190
              D EGSSS LA +LDS QDDGLLETSC  CG+SSKST MM  GP GP+TLCNACGL W
Sbjct: 208 AIPDEEGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKW 259

[Close]

BLAST of Sed0020905 vs. ExPASy TrEMBL
Match: A0A6J1C897 (GATA transcription factor 19-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008345 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-29
Identity = 102/246 (41.46%), Postives = 130/246 (52.85%), Query Frame = 0


Query: 8   DGMGNVSDEDKDGVKGGEDPIHSPPVQPEEPG---------------------------- 67
           D + N   +++D V GGE+ I +P ++ E+ G                            
Sbjct: 24  DNIQNRVGDEEDDVTGGEESIDNPQMRFEDSGGISGSVSVMNRVQDIVPATYVSGSDYNP 83

Query: 68  ----DADGLTVVYQGNVY---SVSPDKVQAALSILRDIVTPDMLSMLGNIVPAGNPDVGS 127
                AD LT+ ++G VY   SVSPDKVQA L +L            G  +P+G P VG+
Sbjct: 84  LTGNGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLG-----------GYEIPSGIPAVGN 143

Query: 128 DPVNQQGTDGLPV--------------LEKRKE---------SFPEDAALGMQLKKGKF- 187
            P+NQQGTDGLP+               EKRKE         +  ++ AL MQ KKG+F 
Sbjct: 144 VPINQQGTDGLPIRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFI 203

Query: 188 ----VDDGEGSSSGLARSLDSDQDDGLLETSCKQCGISSKST-MMLSGPDGPQTLCNACG 190
               + DG GSSS LA++LDS QDDG+LETSC  CGISSKST MM  GP GP+TLCNACG
Sbjct: 204 SSKAISDGVGSSSVLAQTLDSGQDDGMLETSCTHCGISSKSTPMMRRGPAGPRTLCNACG 258

[Close]

BLAST of Sed0020905 vs. ExPASy TrEMBL
Match: A0A1S3BZV1 (GATA transcription factor 24-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495397 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.4e-28
Identity = 107/270 (39.63%), Postives = 134/270 (49.63%), Query Frame = 0


Query: 1   MPNSNSRDGM-------------GNVS---DEDKDGVKGGEDPIHSPPVQPEEP------ 60
           MP+SN +D M             GN+    D++ D + GGE+ I +P ++ E+       
Sbjct: 1   MPDSNFQDAMYGSGVMNDGGRDLGNIQNRVDDEDDDINGGEESIDNPQMRFEDSGGMSGS 60

Query: 61  ---------------------------GDADGLTVVYQGNVY---SVSPDKVQAALSILR 120
                                      G AD LT+ ++G VY   SVSPDKVQA L +L 
Sbjct: 61  VSVISRVEDVVPSTYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLG 120

Query: 121 DIVTPDMLSMLGNIVPAGNPDVGSDPVNQQGTDGLPV--------------LEKRKE--- 180
                      G  +P+G P +GS PVNQQG DG PV               EKRKE   
Sbjct: 121 -----------GYEIPSGIPAIGSVPVNQQGADGFPVRSVQPQRAASLSRFREKRKERCF 180

Query: 181 ------SFPEDAALGMQLKKGKFVD-----DGEGSSSGLARSLDSDQDDGLLETSCKQCG 190
                 S  ++ AL MQ KKG+F+      D  GSSS L+++LDS QDDGLLETSC  CG
Sbjct: 181 EKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCG 240

[Close]

BLAST of Sed0020905 vs. ExPASy TrEMBL
Match: A0A5A7SN59 (GATA transcription factor 24-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002170 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.4e-28
Identity = 107/270 (39.63%), Postives = 134/270 (49.63%), Query Frame = 0


Query: 1   MPNSNSRDGM-------------GNVS---DEDKDGVKGGEDPIHSPPVQPEEP------ 60
           MP+SN +D M             GN+    D++ D + GGE+ I +P ++ E+       
Sbjct: 1   MPDSNFQDAMYGSGVMNDGGRDLGNIQNRVDDEDDDINGGEESIDNPQMRFEDSGGMSGS 60

Query: 61  ---------------------------GDADGLTVVYQGNVY---SVSPDKVQAALSILR 120
                                      G AD LT+ ++G VY   SVSPDKVQA L +L 
Sbjct: 61  VSVISRVEDVVPSTYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLG 120

Query: 121 DIVTPDMLSMLGNIVPAGNPDVGSDPVNQQGTDGLPV--------------LEKRKE--- 180
                      G  +P+G P +GS PVNQQG DG PV               EKRKE   
Sbjct: 121 -----------GYEIPSGIPAIGSVPVNQQGADGFPVRSVQPQRAASLSRFREKRKERCF 180

Query: 181 ------SFPEDAALGMQLKKGKFVD-----DGEGSSSGLARSLDSDQDDGLLETSCKQCG 190
                 S  ++ AL MQ KKG+F+      D  GSSS L+++LDS QDDGLLETSC  CG
Sbjct: 181 EKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCG 240

[Close]

BLAST of Sed0020905 vs. ExPASy TrEMBL
Match: A0A6J1EIU4 (GATA transcription factor 24-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434672 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.4e-28
Identity = 101/221 (45.70%), Postives = 118/221 (53.39%), Query Frame = 0


Query: 39  GDADGLTVVYQGNVY---SVSPDKVQAALSILRDIVTPDMLSMLGNIVPAGNPDVGSDPV 98
           G AD LT+ ++G VY   SVSPDKVQA L +L            G  VP+G P VGS PV
Sbjct: 88  GGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLG-----------GYEVPSGIPAVGSIPV 147

Query: 99  NQQGTDGLPV--------------LEKRKE---------SFPEDAALGMQLKKGKFVD-- 158
           NQQG DG PV               EKRKE         +  ++ AL MQ KKG+F+   
Sbjct: 148 NQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSK 207

Query: 159 ---DGEGSSSGLARSLDSDQDDGLLETSCKQCGISSKST-MMLSGPDGPQTLCNACGLLW 204
              D  GSSS LA +LDS QDDGLLETSC  CG+SSKST MM  GP GP+TLCNACGL W
Sbjct: 208 ASADEVGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKW 267

[Close]

BLAST of Sed0020905 vs. TAIR 10
Match: AT3G21175.2 (ZIM-like 1 )

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-13
Identity = 74/211 (35.07%), Postives = 93/211 (44.08%), Query Frame = 0


Query: 5   NSRDGMGNVSDEDKDGVKGGEDPIHSPPVQPEEPGDADGLTVVYQGNVY---SVSPDKVQ 64
           NS D  G V D    G++ G                 D LT+ +QG VY    VSP+KVQ
Sbjct: 61  NSADNRGEVVDR---GIENG-----------------DQLTLSFQGQVYVFDRVSPEKVQ 120

Query: 65  AALSILRDIVTPDMLSMLGNIVPAGNPDVGSDP----VNQQGTDGLPVLEKRK------- 124
           A L +L     P  L          N  +   P    V Q+    L   EKRK       
Sbjct: 121 AVLLLLGGREVPHTLPTTLGSPHQNNRGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKT 180

Query: 125 --ESFPEDAALGMQLKKGKFV-----DDGEGSSSGLARSLDSDQDDGL----LETSCKQC 184
              +  ++ AL MQ KKG+F      +D  GS+     S  S   +G      E  C+ C
Sbjct: 181 IRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHC 240

Query: 185 GISSKST-MMLSGPDGPQTLCNACGLLWDSK 190
           G S KST MM  GPDGP+TLCNACGL+W +K
Sbjct: 241 GTSEKSTPMMRRGPDGPRTLCNACGLMWANK 251

[Close]

BLAST of Sed0020905 vs. TAIR 10
Match: AT3G21175.1 (ZIM-like 1 )

HSP 1 Score: 72.0 bits (175), Expect = 6.2e-13
Identity = 77/215 (35.81%), Postives = 99/215 (46.05%), Query Frame = 0


Query: 5   NSRDGMGNVSDEDKDGVKGGEDPIHSPPVQPEEPGDADGLTVVYQGNVY---SVSPDKVQ 64
           NS D  G V D    G++ G                 D LT+ +QG VY    VSP+KVQ
Sbjct: 61  NSADNRGEVVDR---GIENG-----------------DQLTLSFQGQVYVFDRVSPEKVQ 120

Query: 65  AALSILRDIVTPDML-SMLGN-------IVPAGNPDVGSDPVNQQGTDGLPVLEKRK--- 124
           A L +L     P  L + LG+       +  +G P   S P  Q+    L   EKRK   
Sbjct: 121 AVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRLSVP--QRLASLLRFREKRKGRN 180

Query: 125 ------ESFPEDAALGMQLKKGKFV-----DDGEGSSSGLARSLDSDQDDGL----LETS 184
                  +  ++ AL MQ KKG+F      +D  GS+     S  S   +G      E  
Sbjct: 181 FDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVL 240

Query: 185 CKQCGISSKST-MMLSGPDGPQTLCNACGLLWDSK 190
           C+ CG S KST MM  GPDGP+TLCNACGL+W +K
Sbjct: 241 CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANK 253

[Close]

BLAST of Sed0020905 vs. TAIR 10
Match: AT1G51600.1 (ZIM-LIKE 2 )

HSP 1 Score: 68.2 bits (165), Expect = 9.0e-12
Identity = 80/228 (35.09%), Postives = 104/228 (45.61%), Query Frame = 0


Query: 8   DGMGNVSDEDKDGVKGG-----EDPIHSPP---------VQPEEPGDADGLTVVYQGNVY 67
           +G G V D+  DG  GG     E  I S P         V        D LT+ +QG VY
Sbjct: 34  NGSGMVDDQADDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRGSEQGDQLTLSFQGQVY 93

Query: 68  ---SVSPDKVQAALSILRDIVTPDMLSM-LGNIVPAGNPDVGSDP-------VNQQGTDG 127
              SV P+KVQA L +L     P      LG+  P  N  V S P       + Q+    
Sbjct: 94  VFDSVLPEKVQAVLLLLGGRELPQAAPPGLGS--PHQNNRVSSLPGTPQRFSIPQRLASL 153

Query: 128 LPVLEKRK---------ESFPEDAALGMQLKKGKFV----DDGEGSSSGLARSLDSDQDD 187
           +   EKRK          +  ++ AL MQ  KG+F     ++ E +S+G   S  S+Q  
Sbjct: 154 VRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAG--SSWGSNQTW 213

Query: 188 GL-------LETSCKQCGISSKST-MMLSGPDGPQTLCNACGLLWDSK 190
            +        E SC+ CGI  KST MM  GP GP+TLCNACGL+W +K
Sbjct: 214 AIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANK 257

[Close]

BLAST of Sed0020905 vs. TAIR 10
Match: AT1G51600.2 (ZIM-LIKE 2 )

HSP 1 Score: 68.2 bits (165), Expect = 9.0e-12
Identity = 80/228 (35.09%), Postives = 104/228 (45.61%), Query Frame = 0


Query: 8   DGMGNVSDEDKDGVKGG-----EDPIHSPP---------VQPEEPGDADGLTVVYQGNVY 67
           +G G V D+  DG  GG     E  I S P         V        D LT+ +QG VY
Sbjct: 34  NGSGMVDDQADDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRGSEQGDQLTLSFQGQVY 93

Query: 68  ---SVSPDKVQAALSILRDIVTPDMLSM-LGNIVPAGNPDVGSDP-------VNQQGTDG 127
              SV P+KVQA L +L     P      LG+  P  N  V S P       + Q+    
Sbjct: 94  VFDSVLPEKVQAVLLLLGGRELPQAAPPGLGS--PHQNNRVSSLPGTPQRFSIPQRLASL 153

Query: 128 LPVLEKRK---------ESFPEDAALGMQLKKGKFV----DDGEGSSSGLARSLDSDQDD 187
           +   EKRK          +  ++ AL MQ  KG+F     ++ E +S+G   S  S+Q  
Sbjct: 154 VRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAG--SSWGSNQTW 213

Query: 188 GL-------LETSCKQCGISSKST-MMLSGPDGPQTLCNACGLLWDSK 190
            +        E SC+ CGI  KST MM  GP GP+TLCNACGL+W +K
Sbjct: 214 AIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANK 257

[Close]

BLAST of Sed0020905 vs. TAIR 10
Match: AT4G24470.1 (GATA-type zinc finger protein with TIFY domain )

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11
Identity = 64/174 (36.78%), Postives = 83/174 (47.70%), Query Frame = 0


Query: 38  PGDADGLTVVYQGNVY---SVSPDKVQAALSILRDIVT----PDM--LSMLGNIVPAGN- 97
           P  A+ LT+ ++G VY   +V  DKV A LS+L         P +  L+   N +P    
Sbjct: 78  PEGANQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEY 137

Query: 98  PDVGSDPVNQQGTD------GLPVLEKR-KESFPEDAALGMQLKKGKF----VDDGEGSS 157
               S P   Q  D           EK+ +    ++ AL M   KG+F    + DG  +S
Sbjct: 138 QSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDGAYNS 197

Query: 158 SGLARSLDSDQDDGLLETSCKQCGISSKST-MMLSGPDGPQTLCNACGLLWDSK 190
                  DS QDD   E SC  CGISSK T MM  GP GP+TLCNACGL W ++
Sbjct: 198 ---GTDQDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANR 248

The following BLAST results are available for this feature:

BLAST of Sed0020905 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136698.1	3.4e-29	41.46	GATA transcription factor 19-like isoform X2 [Momordica charantia]	[more]
XP_022988859.1	3.4e-29	51.37	GATA transcription factor 24-like [Cucurbita maxima]	[more]
XP_038887962.1	1.3e-28	40.96	GATA transcription factor 19-like [Benincasa hispida] >XP_038887963.1 GATA trans...	[more]
XP_008455162.1	4.9e-28	39.63	PREDICTED: GATA transcription factor 24-like isoform X1 [Cucumis melo] >XP_00845...	[more]
XP_022927910.1	4.9e-28	45.70	GATA transcription factor 24-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Sed0020905 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10F25	7.7e-16	37.20	GATA transcription factor 18 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA18 ...	[more]
A2XKR7	1.3e-15	36.32	GATA transcription factor 18 OS=Oryza sativa subsp. indica OX=39946 GN=GATA18 PE...	[more]
Q0DNU1	3.2e-14	35.23	GATA transcription factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA19 ...	[more]
B8AR30	4.2e-14	35.23	GATA transcription factor 19 OS=Oryza sativa subsp. indica OX=39946 GN=GATA19 PE...	[more]
Q8GXL7	8.8e-12	35.81	GATA transcription factor 24 OS=Arabidopsis thaliana OX=3702 GN=GATA24 PE=1 SV=2	[more]

BLAST of Sed0020905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMS2	1.7e-29	51.37	GATA transcription factor 24-like OS=Cucurbita maxima OX=3661 GN=LOC111486083 PE...	[more]
A0A6J1C897	1.7e-29	41.46	GATA transcription factor 19-like isoform X2 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S3BZV1	2.4e-28	39.63	GATA transcription factor 24-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A5A7SN59	2.4e-28	39.63	GATA transcription factor 24-like isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1EIU4	2.4e-28	45.70	GATA transcription factor 24-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Sed0020905 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21175.2	2.1e-13	35.07	ZIM-like 1	[more]
AT3G21175.1	6.2e-13	35.81	ZIM-like 1	[more]
AT1G51600.1	9.0e-12	35.09	ZIM-LIKE 2	[more]
AT1G51600.2	9.0e-12	35.09	ZIM-LIKE 2	[more]
AT4G24470.1	1.2e-11	36.78	GATA-type zinc finger protein with TIFY domain	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 150..206 e-value: 1.5E-4 score: 24.3
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 156..189 e-value: 6.3E-8 score: 32.1
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 151..204 e-value: 2.8E-8 score: 35.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	PANTHER	PTHR46125	GATA TRANSCRIPTION FACTOR 28	coord: 117..189
None	No IPR available	PANTHER	PTHR46125:SF24	GATA TRANSCRIPTION FACTOR 18	coord: 117..189
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 153..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020905.1	Sed0020905.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding