Sed0020888 (gene) Chayote v1

Overview


Name	Sed0020888
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	LG03: 16910163 .. 16914994 (+)
RNA-Seq Expression	Sed0020888
Synteny	Sed0020888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAACTTGAAATAATGCAATTTTATATATTATTTTCTAAAAAATCTATCCTAAAGAGAAATGAAACATTGTGCTTTCCAACTTCAAGGTCTCTCTCTGCTTCATTAACCCTACCTCATCAAATCCTCTTCTTGAATGTCAAGGAAACAACCTCCGGTATCACAACGGTAGGGGAATTGATGGAATCTTCGACTAGGAGTTCGCTGCCCACTATTGTATTCGACCTTTAAATTTCCTCCCTCGCATCCCGACCCATTTCACTCTTTTTTACCTTCATTTTCATTCATCGCGATTTTACACACATTTCACCCTTTTCTCTCCAACTCCAACCCCCTTCATCGCCATTGCCACTACCGAAGCACCTAAAGTCCTCATCATCTCGATCACCGCCAGCTTCATCTGCCTGTCGCAACCTATATTTGAAAGGTTAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATTTCAATGGAAATTTCTCATTTTTTGCACTCATATGTTTGATTATATTAGGTATAATGTGAATTTAGAATTAATTTTTTGGTTAAGTTTTAGATTTAGATTTAAATAAGAAATTTAAAATTTTAGATTTAGAATTGAAATTAGATTTAGGTTTAGTGTAATTTCAGGATTGAAAATACATTAGGTTTATTTTAAGTTTAGGATTGTATTTAGATGTAGCGTTTATTGTAATTGTAGGATTGAAAATAGATTTAGGTTTAGTTTAAGTTTAAGATTGCAATTAGATGTTTATGCATAGGTTGTAATTAGTTTTTTAGACTAGTTTTTTACTCAATCAATTTCACGGTTGAAGAATGGGTGAAAAGGCATGTGAAGAAGGTGACCAAAATGTTTCGGTCATTGAAACTAATTCTTTTAGTGATAAATCAATCAAAATATTCAATGTTCCATTTCTCCCAAAAAATGAAGGAATTTCTAGTAACCATAATTTAGATAGTGCTATGGCATGTATGGCACCAGAGCAAGTAGATGAAACATTTAAAAGGGAAATTAATGGAAGAAGGAATCAAACTTCAAGACAAGTGAATATATTTTTTAACTTTCAAATGTATTTTTTAGTTGTTAAAACTTTATATTAAAGACTATTTTAGTACTTATAATTTATTCAATCATTTCTCCTATCTAACATGCTTAATATAACTTCAAATACTTGTCCATATTGATATAATGGATCAGCCTGGTGGTCAAATAAATAATTTGCGTAAAATAAACTGGATTGAGGTTATAAGTTCAATCTATAGTAACCATTAAGTTTCTCAGGCTATCAAGTATAATTAGGTCAAATGGTTGTTTCGTGAAGGTCTCGTAGATTCTAGTTTTCATTATATGAATCAATTGTTTTTTTTTCACTTTACAATTGTGATTTTCTATAATATATTTTGCCTTACTCGTCATAAGCCTTATTGGAGTAGAAATATATGCAATCAAGCAGAAGAAACGAACTTTTTGAAGCATTAAATGACAATACTTTGAGCTTTTTGATGCATTAAATGGCAATACTTTGTCAGAGTTAGGTTCTATCACTAAATATTGCTATCACTACAGTATGGTCATTTTAAACTATATGTCCATATCTCAAAATAAAAGTAGAGTTAAAAGAAGTGTTTTTTAAAGCATGTGTCTTGAGAAACCATGTATCTTAGCCAAAAGTAAGAAATTAGGAAATTTTCTTTCTTGGGGATTTTATTTAATTTTAAAAAATAATATATATGTGTGTTAAGTAGATGACATGTTTAAAGGCACAATTGAAGTGTGGTGGGCTTCAAGATTGCCCTTGCCTTGCCTCACATTAGACAAGGTGCCTTTGTTGCGGTCTCCTCGAGTGTTTTCTAAATGCATTCTATACGTGATTCTCTCTGTGCATGAAATGGGAGAGTAATATTAATATTTTTAAAGAAGTTGAGGATGGGTGTAGGTGCCCTCAGAGATAGTAGATAGTAGAGTGAAACTTTGATTTCCCAGTTTGAGTAAAAAATATTCTTAATGGAGTTTTTTTTATAAGCTTATGAATGTGGAGGCCAACAACCATCATTTTTTGTTGCATGATAAAAAATCTGCTACTTTTTGATAATCATTTGGTTTTTTGTTTCCAATTTTCGGTTTGGTTTCTAAGAATATATGTAGGATGTAGATATCCAAATAAGAAAAAACACAAGGTAAGAGAGTTGTTGTAGGCTTAAATTTTAAAAACAAAAAACTTAAAAAAAAATGGTTATCAAACATGGCCTATGTTAGTAGATTTCTATAACTTTTAATCTATTTTGTAAGTGAATGTCAGTGTTGTCTTGTGTACCTATTATTTTTTAAAAATGATTGCTTTTCTTTCTTTTAAAAGAAACTCCATTTGAAATGTATTTAGGGTCATTATAGAATCTTTGAAGTTTTGTTGAGAAGTAATAGATTTTCTTCGAATTCTGTTGGTGGCTGCTGTTAGTAAAAGGTCAATATATTTATCAACTCCAAATCCTCAGGTATACCAAAAAGTTCCCACCATTATTTTTTGGTTGAGTCTTTCCTTTATCGAAGTATTTGCATTTGCTTGATAGATTCAACTCTATGTGGAGACTTCACAGTTAATTTAACTATTGAGAGTGACCAATAATACCCATTTGTTTTTCAACTAATTTGTCATCTAGTATGTTTGCAAGCACTTGGACAGAATTTTAAAAAGAAAGTATGACTTATTCCCTTGACAATTTAGTAGTGTGGAAAAAGAAAGTGGAAGGTAAAGTCTTAGATACAAAATTTTAAAAAGTAAGTATCAAGACATTGCACAAGAAATAGATAACTTTGATTGACTGCCTTATGTTTTCATTTTATTTATATCTTAGGTAAACGAGAGGCTTTAGAAATTATTCAAACTTATAAAGTGAACCATTATAAGTAGATAACTTTGGTTGCCTTAATTTTTTAGAATTAGAATTGAAGCTGAAGTATATATTGGATTGATGCTTATAGGGAATATGGAAAGGGAAATAAAGAGGCTAGGGAAAAGACCTATGTTGTAGGCATTTAAATTTTAATGTAAGTTTCTCCATTGTTCTCATCATTTTCTTTTCTTGCTTAAGATTCTGAAATATTTATTGATGCATATTCGTTAGAATTACTTATTTACTCTTCTCTTCTCGATTTCAGTAATTCTTCACATTTCCTTGTGATTGAAAGTAGTAACGAAAATAGTAAGAGATACCAAACAAGCTCAAGGGGTCTAAATCTAAGTATTATAATAAGCAAAAATTGTTGAACATTGAGGTAATTTCTTTCGAGAAGTCATCACTTGAGATATTACAATTTTCAAATTCAACCATTGTATATATTAGGAGTATTGAACGTTTTTCTTTTCATTTGTTTGTTGCTGATTAATTTGATTAATTGTAGTGCATCTCTATTTTTCCTTTCTGATTAGGTGTATCTTCTAACAATTTGTTGGTTGTTACAAAGCTGTGGGCCATGTTACTTTATTTAGGCAAGTTTCTTTTTGGTGTGGTTGTATGGAATAAACAACCCCTAAGGATGGCACAATGGTTGAAGACTTGGTTTTTTAGGGTATGCTCCCCTCAAGGTCTCAGGTTCGAGACTAAGTTGTGACATTACTTCTTCGATGTAACTTAAGTGCAACTTCGCACAGGGGATAGTATATCATGCTTTTTTGTTATATTGTGTAAACTAACTAGTTTTCACACCCCTCTTAAACATTTTAAGAATTATAAGTTTATTGATATTGATTTTTTCTTTTTGGGCAAGTGTAATGTACAAATTATTTAGTCATATATGAAATAATATTTGTTGAATAAGACTTGTGGGCGCATAATATAAATGTTTCTTGACAGGTAAAGACAAACAAAACTGGTTATAAATAGGAAGCCCACAGTAGCAATGCTAAAATCCATAAGGATAAGCTCCTTGCGATTGTTGCCTATCATGATTATGAAATATGGCAGATGGATGTTAAAACCGCTTTCTTGAATGCGTTCTTGAAAGAGGATGTGTATATGACACACCCTGAAGGTTTTCAAGATCCAGCCAATCCTGGGAGAGTATACAGGCTTCAAAAATCTATTTATGGATTGAAAAAAGTATCTAGGAGTTGGAACCTCAGATTTGATGAGGCATTCAAACAGTTTAGGTTCCTTAAAAATGAAGAGGAATTTTGTGTATACAAGAAGTTAAGTGGGATCAGTGTTACCTTCCTTGTTCTGTATGTAGATGACATACTACTCATAGGAAACGATAGAACCATGCTTGAATCAGTCAAAGATTGACTTAAAAATTGTTCCTCTATGAAAGACATTGGAGAGGCTGAGTACATTCTAGGAATAAGAATCTATAGAGATAGATCCAAAAGAATGATTGGACTTAGTCAGGAAACTTATATTGATAAGGTTCTTACTAAGTTCAATATGGAAACTCTAAGAGAGGTTTCATTCCCATGCAACATGGCATATCGATTAGCAAGACTCAATGTCCTACAAGTCCTATTGAGGCTAAGCGTATGAGTATTGTTCCTTATGCTTTGGCAATAGGTTCAATCATGTATGCCATGATTTGTACTCGACCGGACGATGTGCTCATGCTTTTAGCATATGTAACAGATACCAGTCTAATCCTAGTGATACACACTGGATAGTAGTGAAAAATATTCTTAAGTACTTGAGAAAAACGAAGGATAATTTTATGGTTTATGGTGGAGTTAATGAGTTGGTTGTTACTGGATAAACTGATGCAAACATTGCAGATCCACTGACTAAACCATTACCGCAACCCAAACATGAGAGTCATACTAGGACTATGAGTATTAGAC

mRNA sequence

CGAACTTGAAATAATGCAATTTTATATATTATTTTCTAAAAAATCTATCCTAAAGAGAAATGAAACATTGTGCTTTCCAACTTCAAGGTCTCTCTCTGCTTCATTAACCCTACCTCATCAAATCCTCTTCTTGAATGTCAAGGAAACAACCTCCGGTATCACAACGGTAGGGGAATTGATGGAATCTTCGACTAGGAGTTCGCTGCCCACTATTGTATTCGACCTTTAAATTTCCTCCCTCGCATCCCGACCCATTTCACTCTTTTTTACCTTCATTTTCATTCATCGCGATTTTACACACATTTCACCCTTTTCTCTCCAACTCCAACCCCCTTCATCGCCATTGCCACTACCGAAGCACCTAAAGTCCTCATCATCTCGATCACCGCCAGCTTCATCTGCCTGTCGCAACCTATATTTGAAAGGGAATATGGAAAGGGAAATAAAGAGGCTAGGGAAAAGACCTATGTTGTAGGCATTTAAATTTTAATTAATTCTTCACATTTCCTTGTGATTGAAAGTAGTAACGAAAATAGTAAGAGATACCAAACAAGCTCAAGGGGTCTAAATCTAAGTATTATAATAAGCAAAAATTGTTGAACATTGAGGTGTATCTTCTAACAATTTGTTGGTTGTTACAAAGCTGTGGGCCATGTTACTTTATTTAGGCAAGTTTCTTTTTGGTGTGGTTGTATGGAATAAACAACCCCTAAGGATGGCACAATGGTTGAAGACTTGGTTTTTTAGGGTATGCTCCCCTCAAGGTCTCAGGTTCGAGACTAAGTTGTGACATTACTTCTTCGATGTAACTTAAGTGCAACTTCGCACAGGGGATAGTATATCATGCTTTTTTGTTATATTGTGTAAACTAACTAGTTTTCACACCCCTCTTAAACATTTTAAGAATTATAAGTTTATTGATATTGATTTTTTCTTTTTGGGCAAGTGTAATGTACAAATTATTTAGTCATATATGAAATAATATTTGTTGAATAAGACTTGTGGGCGCATAATATAAATGTTTCTTGACAGGTAAAGACAAACAAAACTGGTTATAAATAGGAAGCCCACAGTAGCAATGCTAAAATCCATAAGGATAAGCTCCTTGCGATTGTTGCCTATCATGATTATGAAATATGGCAGATGGATGTTAAAACCGCTTTCTTGAATGCGTTCTTGAAAGAGGATGTGTATATGACACACCCTGAAGGTTTTCAAGATCCAGCCAATCCTGGGAGAGTATACAGGCTTCAAAAATCTATTTATGGATTGAAAAAAGTATCTAGGAGTTGGAACCTCAGATTTGATGAGGCATTCAAACAGTTTAGGTTCCTTAAAAATGAAGAGGAATTTTGTGTATACAAGAAGTTAAGTGGGATCAGTGTTACCTTCCTTGTTCTGTATGTAGATGACATACTACTCATAGGAAACGATAGAACCATGCTTGAATCAGTCAAAGATTGACTTAAAAATTGTTCCTCTATGAAAGACATTGGAGAGGCTGAGTACATTCTAGGAATAAGAATCTATAGAGATAGATCCAAAAGAATGATTGGACTTAGTCAGGAAACTTATATTGATAAGGTTCTTACTAAGTTCAATATGGAAACTCTAAGAGAGGTTTCATTCCCATGCAACATGGCATATCGATTAGCAAGACTCAATGTCCTACAAGTCCTATTGAGGCTAAGCGTATGAGTATTGTTCCTTATGCTTTGGCAATAGGTTCAATCATGTATGCCATGATTTGTACTCGACCGGACGATGTGCTCATGCTTTTAGCATATGTAACAGATACCAGTCTAATCCTAGTGATACACACTGGATAGTAGTGAAAAATATTCTTAAGTACTTGAGAAAAACGAAGGATAATTTTATGGTTTATGGTGGAGTTAATGAGTTGGTTGTTACTGGATAAACTGATGCAAACATTGCAGATCCACTGACTAAACCATTACCGCAACCCAAACATGAGAGTCATACTAGGACTATGAGTATTAGAC

Coding sequence (CDS)

ATGGATGTTAAAACCGCTTTCTTGAATGCGTTCTTGAAAGAGGATGTGTATATGACACACCCTGAAGGTTTTCAAGATCCAGCCAATCCTGGGAGAGTATACAGGCTTCAAAAATCTATTTATGGATTGAAAAAAGTATCTAGGAGTTGGAACCTCAGATTTGATGAGGCATTCAAACAGTTTAGGTTCCTTAAAAATGAAGAGGAATTTTGTGTATACAAGAAGTTAAGTGGGATCAGTGTTACCTTCCTTGTTCTGTATGTAGATGACATACTACTCATAGGAAACGATAGAACCATGCTTGAATCAGTCAAAGATTGA

Protein sequence

MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQFRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVKD

Homology

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BLAST of Sed0020888 vs. NCBI nr
Match: BAA22288.1 (polyprotein [Oryza australiensis])

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35
Identity = 75/105 (71.43%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1    MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
            MDVKTAFLN  L EDVYM  P+GF DP +PG++ +LQKSIYGLK+ SRSWN+RFDE  K 
Sbjct: 905  MDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKG 964

Query: 61   FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
            F F+KNEEE CVYKK+SG ++ FL+LYVDDILLIGND  MLESVK
Sbjct: 965  FGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVK 1009

[Close]

BLAST of Sed0020888 vs. NCBI nr
Match: KAG7543183.1 (Reverse transcriptase RNA-dependent DNA polymerase [Arabidopsis thaliana x Arabidopsis arenosa] >KAG7547824.1 Reverse transcriptase RNA-dependent DNA polymerase [Arabidopsis suecica])

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-35
Identity = 77/105 (73.33%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
           MDVKTAFLN  L+EDVYMT PEGF  P N G+V +LQ+SIYGL+K SRSWNLRFDEA K+
Sbjct: 88  MDVKTAFLNGNLEEDVYMTQPEGFTSPQNAGKVCKLQRSIYGLQKASRSWNLRFDEAIKE 147

Query: 61  FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
           F F++NEEE CVYKK SG +V FLVLYVDDILLIGND  +L+SVK
Sbjct: 148 FDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLIGNDIPLLQSVK 192

[Close]

BLAST of Sed0020888 vs. NCBI nr
Match: KAF5783325.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 157.5 bits (397), Expect = 6.2e-35
Identity = 76/105 (72.38%), Postives = 84/105 (80.00%), Query Frame = 0


Query: 1   MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
           MDVKTAFLN  L EDVYM  PEGF DP NP +V +L KSIYGLK+ SRSWNLRFD+  KQ
Sbjct: 882 MDVKTAFLNGHLTEDVYMEQPEGFVDPKNPKKVCKLNKSIYGLKQASRSWNLRFDQKIKQ 941

Query: 61  FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
           F F+KNE+E CVYKK SG S+TFL+LYVDDILLIGND  ML  VK
Sbjct: 942 FGFIKNEDEPCVYKKASGSSITFLILYVDDILLIGNDIPMLRDVK 986

[Close]

BLAST of Sed0020888 vs. NCBI nr
Match: KAF5788164.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 157.5 bits (397), Expect = 6.2e-35
Identity = 76/105 (72.38%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
           MDVKTAFLN  L EDVYM  PEGF DP NP +V +L KSIYGLK+ SRSWNLRFD+  KQ
Sbjct: 858 MDVKTAFLNGHLIEDVYMEQPEGFVDPKNPKKVCKLNKSIYGLKQASRSWNLRFDQKIKQ 917

Query: 61  FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
           F F+KNE+E CVYKK SG S+TFL+LYVDDILLIGND  ML+ VK
Sbjct: 918 FGFIKNEDEPCVYKKASGSSITFLILYVDDILLIGNDIPMLQDVK 962

[Close]

BLAST of Sed0020888 vs. NCBI nr
Match: KAF5757832.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 155.2 bits (391), Expect = 3.1e-34
Identity = 74/105 (70.48%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
           MDVKTAFLN  L EDVYM  PEGF DP NP +V +L KSIYGLK+ SR+WNLRFD+  KQ
Sbjct: 882 MDVKTAFLNGHLTEDVYMEQPEGFVDPKNPKKVCKLNKSIYGLKQASRTWNLRFDQKIKQ 941

Query: 61  FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
           F F+KNE+E CVYKK SG S+TFL+LYVDDILLIGN+  ML+ VK
Sbjct: 942 FGFIKNEDEPCVYKKASGSSITFLILYVDDILLIGNNIPMLQDVK 986

[Close]

BLAST of Sed0020888 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.0e-19
Identity = 45/106 (42.45%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 1    MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
            +DVKTAFL+  L+E++YM  PEGF+       V +L KS+YGLK+  R W ++FD   K 
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   FRFLKNEEEFCVY-KKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
              +LK   + CVY K+ S  +   L+LYVDD+L++G D+ ++  +K
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLK 1026

[Close]

BLAST of Sed0020888 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.8e-16
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 1    MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
            +DV  AFL   L +DVYM+ P GF D   P  V +L+K++YGLK+  R+W +        
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVKD 107
              F+ +  +  ++    G S+ ++++YVDDIL+ GND T+L +  D
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLD 1169

[Close]

BLAST of Sed0020888 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.4e-15
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 1    MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
            +DV  AFL   L ++VYM+ P GF D   P  V RL+K+IYGLK+  R+W +        
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVKD 107
              F+ +  +  ++    G S+ ++++YVDDIL+ GND  +L+   D
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLD 1152

[Close]

BLAST of Sed0020888 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-14
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 1    MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
            MDVKTAFLN  LKE++YM  P+G     N   V +L K+IYGLK+ +R W   F++A K+
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGIS--CNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   FRFLKNEEEFCVY--KKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
              F+ +  + C+Y   K +     +++LYVDD+++   D T + + K
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFK 1105

[Close]

BLAST of Sed0020888 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-12
Identity = 35/105 (33.33%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 1   MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
           MDV TAFLN+ + E +Y+  P GF +  NP  V+ L   +YGLK+    WN   +   K+
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
             F ++E E  +Y + +     ++ +YVDD+L+      + + VK
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVK 105

[Close]

BLAST of Sed0020888 vs. ExPASy TrEMBL
Match: O23864 (Polyprotein OS=Oryza australiensis OX=4532 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.1e-36
Identity = 75/105 (71.43%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1    MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
            MDVKTAFLN  L EDVYM  P+GF DP +PG++ +LQKSIYGLK+ SRSWN+RFDE  K 
Sbjct: 905  MDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKG 964

Query: 61   FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
            F F+KNEEE CVYKK+SG ++ FL+LYVDDILLIGND  MLESVK
Sbjct: 965  FGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVK 1009

[Close]

BLAST of Sed0020888 vs. ExPASy TrEMBL
Match: A0A6D2HJE2 (CCHC-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS1945 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.3e-34
Identity = 74/105 (70.48%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 1   MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
           MDVKTAFLN  L+EDVYM  PEGF  P N G+V +LQ++IYGLK+ SRSWNLRFDEA K+
Sbjct: 626 MDVKTAFLNGKLEEDVYMIQPEGFTSPENAGKVCKLQRAIYGLKQASRSWNLRFDEAIKE 685

Query: 61  FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
           F F++NEEE CVYKK SG +V FLVLYVDDI LIGND  +L+SVK
Sbjct: 686 FDFIRNEEEPCVYKKTSGSAVAFLVLYVDDIFLIGNDIPLLKSVK 730

[Close]

BLAST of Sed0020888 vs. ExPASy TrEMBL
Match: D3IVT9 (Putative retrotransposon protein OS=Phyllostachys edulis OX=38705 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.7e-34
Identity = 74/105 (70.48%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1    MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
            MDVKTAFLN  L EDVYMT PEGF DP N  +V +LQKSIYGLK+ SRSWN+RFDE  K+
Sbjct: 901  MDVKTAFLNGKLSEDVYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKR 960

Query: 61   FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
            F F+KN+EE CVY K+SG ++  L+LYVDDILLIGND  MLESVK
Sbjct: 961  FGFVKNKEEPCVYMKVSGSTLVILILYVDDILLIGNDIPMLESVK 1005

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BLAST of Sed0020888 vs. ExPASy TrEMBL
Match: Q2QQ28 (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g32440 PE=4 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 9.7e-34
Identity = 73/105 (69.52%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
           MDVKT FLN  L EDVYMT P+GF DP +  ++ +LQKSIYGLK+ SRSWN+RFDE  K 
Sbjct: 690 MDVKTTFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVVKA 749

Query: 61  FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
            RF+KNEEE CVYKK+SG ++ FL+LYVDDILLIGND  MLESVK
Sbjct: 750 LRFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDILMLESVK 794

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BLAST of Sed0020888 vs. ExPASy TrEMBL
Match: D3IVU0 (Putative retrotransposon protein OS=Phyllostachys edulis OX=38705 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 73/105 (69.52%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MDVKTAFLNAFLKEDVYMTHPEGFQDPANPGRVYRLQKSIYGLKKVSRSWNLRFDEAFKQ 60
           MDVKTAFLN  L EDVYMT PEGF DP N  +V +LQKSIYGLK+ SRSWN+RFDE  K+
Sbjct: 485 MDVKTAFLNGNLHEDVYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKR 544

Query: 61  FRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
           F F+KN+EE CVY K+SG ++  L+LYVDDILL+GND  MLESVK
Sbjct: 545 FGFIKNKEEPCVYMKVSGSTLVILILYVDDILLVGNDIPMLESVK 589

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BLAST of Sed0020888 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 74.7 bits (182), Expect = 5.0e-14
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 1   MDVKTAFLNAFLKEDVYMTHPEGFQ----DPANPGRVYRLQKSIYGLKKVSRSWNLRFDE 60
           +D+  AFLN  L E++YM  P G+     D   P  V  L+KSIYGLK+ SR W L+F  
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  AFKQFRFLKNEEEFCVYKKLSGISVTFLVLYVDDILLIGNDRTMLESVK 106
               F F+++  +   + K++      +++YVDDI++  N+   ++ +K
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELK 301

The following BLAST results are available for this feature:

BLAST of Sed0020888 vs. NCBI nr


Match Name	E-value	Identity	Description
BAA22288.1	1.3e-35	71.43	polyprotein [Oryza australiensis]	[more]
KAG7543183.1	1.6e-35	73.33	Reverse transcriptase RNA-dependent DNA polymerase [Arabidopsis thaliana x Arabi...	[more]
KAF5783325.1	6.2e-35	72.38	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
KAF5788164.1	6.2e-35	72.38	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
KAF5757832.1	3.1e-34	70.48	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]

BLAST of Sed0020888 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.0e-19	42.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	8.8e-16	36.79	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	7.4e-15	36.79	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.3e-14	39.25	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	2.0e-12	33.33	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Sed0020888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
O23864	6.1e-36	71.43	Polyprotein OS=Oryza australiensis OX=4532 PE=4 SV=1	[more]
A0A6D2HJE2	3.3e-34	70.48	CCHC-type domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR...	[more]
D3IVT9	9.7e-34	70.48	Putative retrotransposon protein OS=Phyllostachys edulis OX=38705 PE=4 SV=1	[more]
Q2QQ28	9.7e-34	69.52	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]
D3IVU0	1.3e-33	69.52	Putative retrotransposon protein OS=Phyllostachys edulis OX=38705 PE=4 SV=1	[more]

BLAST of Sed0020888 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.0e-14	33.94	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..105 e-value: 6.9E-27 score: 94.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..103
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020888.1	Sed0020888.1	mRNA
Sed0020888.2	Sed0020888.2	mRNA
Sed0020888.3	Sed0020888.3	mRNA
Sed0020888.4	Sed0020888.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding