
Sed0020818 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTATAACCCCCCAAAAATCTTTCTTTTCACTTCAATCTCTTATATATATATTAACATAATCTTCACCCCAAAGAAAACAACTCCAAAAAACAAAAGCTACCCAATTTTTGATATCATAAATCAACAGCAATGGCCAAGAGTATATCAACAATGATGGAGATTTTGGCTTTGGTTTTGGTTTTGAGCTGTTGGTCATGCCATTGCAAGAGCCAAGAGTTATTGATGGGTTGTGATGAGATATATGTTGTTCGTGAAGGGGAAACATTGCATAGCATTAGTGAAAAATGTGGAGATCTTTTTATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTCATCAAAATCACTCCTTTTCATCATATTGTTCACGGGCTTCGTCACATTTGAATTTCGTGATAGCAATGGATTCAATATATGATGGTCGTCAACCCAAAAATTAATTTCTTATCAATTTTCTTGACATTCAAATATTGTAGAATCATGCGGTATGTCCTATAACCTTAATTAACACGAGCATGAGATGACACTCACAAAAAGAAATTTTTTTTTCTTTTTTCTTTTTTTTTTTCTTTTCTCTTTCAAGTTTTGTGGATCTTCTTGTAAATATGGTAAGAGAACTTTATGTTCAAATTTACTTCATGATATATTAAAAGGAAG TTATAACCCCCCAAAAATCTTTCTTTTCACTTCAATCTCTTATATATATATTAACATAATCTTCACCCCAAAGAAAACAACTCCAAAAAACAAAAGCTACCCAATTTTTGATATCATAAATCAACAGCAATGGCCAAGAGTATATCAACAATGATGGAGATTTTGGCTTTGGTTTTGGTTTTGAGCTGTTGGTCATGCCATTGCAAGAGCCAAGAGTTATTGATGGGTTGTGATGAGATATATGTTGTTCGTGAAGGGGAAACATTGCATAGCATTAGTGAAAAATGTGGAGATCTTTTTATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTCATCAAAATCACTCCTTTTCATCATATTGTTCACGGGCTTCGTCACATTTGAATTTCGTGATAGCAATGGATTCAATATATGATGGTCGTCAACCCAAAAATTAATTTCTTATCAATTTTCTTGACATTCAAATATTGTAGAATCATGCGGTATGTCCTATAACCTTAATTAACACGAGCATGAGATGACACTCACAAAAAGAAATTTTTTTTTCTTTTTTCTTTTTTTTTTTCTTTTCTCTTTCAAGTTTTGTGGATCTTCTTGTAAATATGGTAAGAGAACTTTATGTTCAAATTTACTTCATGATATATTAAAAGGAAG ATGGCCAAGAGTATATCAACAATGATGGAGATTTTGGCTTTGGTTTTGGTTTTGAGCTGTTGGTCATGCCATTGCAAGAGCCAAGAGTTATTGATGGGTTGTGATGAGATATATGTTGTTCGTGAAGGGGAAACATTGCATAGCATTAGTGAAAAATGTGGAGATCTTTTTATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTCATCAAAATCACTCCTTTTCATCATATTGTTCACGGGCTTCGTCACATTTGA MAKSISTMMEILALVLVLSCWSCHCKSQELLMGCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHHIVHGLRHI Homology
BLAST of Sed0020818 vs. NCBI nr
Match: KAG6595189.1 (hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027207.1 hypothetical protein SDJN02_11218, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 125.6 bits (314), Expect = 2.3e-25 Identity = 67/92 (72.83%), Postives = 71/92 (77.17%), Query Frame = 0
BLAST of Sed0020818 vs. NCBI nr
Match: KAE8647420.1 (hypothetical protein Csa_003059 [Cucumis sativus]) HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23 Identity = 60/84 (71.43%), Postives = 66/84 (78.57%), Query Frame = 0
BLAST of Sed0020818 vs. NCBI nr
Match: XP_012066520.1 (uncharacterized protein LOC105629522 [Jatropha curcas]) HSP 1 Score: 109.8 bits (273), Expect = 1.3e-20 Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 0
BLAST of Sed0020818 vs. NCBI nr
Match: PIN05403.1 (hypothetical protein CDL12_22060 [Handroanthus impetiginosus]) HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19 Identity = 61/101 (60.40%), Postives = 70/101 (69.31%), Query Frame = 0
BLAST of Sed0020818 vs. NCBI nr
Match: XP_002283136.1 (PREDICTED: uncharacterized protein LOC100244252 [Vitis vinifera] >XP_034694604.1 uncharacterized protein LOC117920978 [Vitis riparia] >RVX11881.1 hypothetical protein CK203_009562 [Vitis vinifera]) HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19 Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 0
BLAST of Sed0020818 vs. ExPASy TrEMBL
Match: A0A438JSE7 (LysM domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_009562 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 9.0e-20 Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 0
BLAST of Sed0020818 vs. ExPASy TrEMBL
Match: A0A2G9GJE3 (LysM domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22060 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 9.0e-20 Identity = 61/101 (60.40%), Postives = 70/101 (69.31%), Query Frame = 0
BLAST of Sed0020818 vs. ExPASy TrEMBL
Match: A0A438EJV6 (LysM domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_089200 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19 Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 0
BLAST of Sed0020818 vs. ExPASy TrEMBL
Match: A0A7J6W511 (Peptidoglycan-binding LysM domain-containing protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_017960 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19 Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 0
BLAST of Sed0020818 vs. ExPASy TrEMBL
Match: A0A6N2LQ08 (LysM domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS263395 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19 Identity = 60/94 (63.83%), Postives = 66/94 (70.21%), Query Frame = 0
BLAST of Sed0020818 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 90.9 bits (224), Expect = 5.8e-19 Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 0
BLAST of Sed0020818 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 85.9 bits (211), Expect = 1.9e-17 Identity = 37/46 (80.43%), Postives = 43/46 (93.48%), Query Frame = 0
BLAST of Sed0020818 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 82.4 bits (202), Expect = 2.1e-16 Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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