Sed0020818 (gene) Chayote v1

Overview
NameSed0020818
Typegene
OrganismSechium edule (Chayote v1)
DescriptionLysM domain-containing protein
LocationLG14: 3299766 .. 3300443 (+)
RNA-Seq ExpressionSed0020818
SyntenySed0020818
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATAACCCCCCAAAAATCTTTCTTTTCACTTCAATCTCTTATATATATATTAACATAATCTTCACCCCAAAGAAAACAACTCCAAAAAACAAAAGCTACCCAATTTTTGATATCATAAATCAACAGCAATGGCCAAGAGTATATCAACAATGATGGAGATTTTGGCTTTGGTTTTGGTTTTGAGCTGTTGGTCATGCCATTGCAAGAGCCAAGAGTTATTGATGGGTTGTGATGAGATATATGTTGTTCGTGAAGGGGAAACATTGCATAGCATTAGTGAAAAATGTGGAGATCTTTTTATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTCATCAAAATCACTCCTTTTCATCATATTGTTCACGGGCTTCGTCACATTTGAATTTCGTGATAGCAATGGATTCAATATATGATGGTCGTCAACCCAAAAATTAATTTCTTATCAATTTTCTTGACATTCAAATATTGTAGAATCATGCGGTATGTCCTATAACCTTAATTAACACGAGCATGAGATGACACTCACAAAAAGAAATTTTTTTTTCTTTTTTCTTTTTTTTTTTCTTTTCTCTTTCAAGTTTTGTGGATCTTCTTGTAAATATGGTAAGAGAACTTTATGTTCAAATTTACTTCATGATATATTAAAAGGAAG

mRNA sequence

TTATAACCCCCCAAAAATCTTTCTTTTCACTTCAATCTCTTATATATATATTAACATAATCTTCACCCCAAAGAAAACAACTCCAAAAAACAAAAGCTACCCAATTTTTGATATCATAAATCAACAGCAATGGCCAAGAGTATATCAACAATGATGGAGATTTTGGCTTTGGTTTTGGTTTTGAGCTGTTGGTCATGCCATTGCAAGAGCCAAGAGTTATTGATGGGTTGTGATGAGATATATGTTGTTCGTGAAGGGGAAACATTGCATAGCATTAGTGAAAAATGTGGAGATCTTTTTATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTCATCAAAATCACTCCTTTTCATCATATTGTTCACGGGCTTCGTCACATTTGAATTTCGTGATAGCAATGGATTCAATATATGATGGTCGTCAACCCAAAAATTAATTTCTTATCAATTTTCTTGACATTCAAATATTGTAGAATCATGCGGTATGTCCTATAACCTTAATTAACACGAGCATGAGATGACACTCACAAAAAGAAATTTTTTTTTCTTTTTTCTTTTTTTTTTTCTTTTCTCTTTCAAGTTTTGTGGATCTTCTTGTAAATATGGTAAGAGAACTTTATGTTCAAATTTACTTCATGATATATTAAAAGGAAG

Coding sequence (CDS)

ATGGCCAAGAGTATATCAACAATGATGGAGATTTTGGCTTTGGTTTTGGTTTTGAGCTGTTGGTCATGCCATTGCAAGAGCCAAGAGTTATTGATGGGTTGTGATGAGATATATGTTGTTCGTGAAGGGGAAACATTGCATAGCATTAGTGAAAAATGTGGAGATCTTTTTATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTCATCAAAATCACTCCTTTTCATCATATTGTTCACGGGCTTCGTCACATTTGA

Protein sequence

MAKSISTMMEILALVLVLSCWSCHCKSQELLMGCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHHIVHGLRHI
Homology
BLAST of Sed0020818 vs. NCBI nr
Match: KAG6595189.1 (hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027207.1 hypothetical protein SDJN02_11218, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-25
Identity = 67/92 (72.83%), Postives = 71/92 (77.17%), Query Frame = 0

Query: 1  MAKSISTMMEILALVLVLSCWSCH-CKSQELLMGCDEIYVVREGETLHSISEKCGDLFIV 60
          MAK  S+  E L LVLVLS W    C SQE+LMGCDEIYVVREGETL SISEKCGD FI 
Sbjct: 1  MAKRSSSRREFLVLVLVLSWWCVWCCNSQEVLMGCDEIYVVREGETLQSISEKCGDPFIF 60

Query: 61 EENPHINDPDDVFPGLVIKITPF-HHIVHGLR 91
          E NPHIND DDVFPGLVIKITPF H  + G+R
Sbjct: 61 EHNPHINDVDDVFPGLVIKITPFLHRFLDGVR 92

BLAST of Sed0020818 vs. NCBI nr
Match: KAE8647420.1 (hypothetical protein Csa_003059 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23
Identity = 60/84 (71.43%), Postives = 66/84 (78.57%), Query Frame = 0

Query: 2  AKSISTMMEILALVLVLSCWSCHCKSQELL-MGCDEIYVVREGETLHSISEKCGDLFIVE 61
          + S+S    +  ++LVLSC    CKS ELL   C+EIYVV EGETL SISEKCGD FIVE
Sbjct: 10 SSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSISEKCGDPFIVE 69

Query: 62 ENPHINDPDDVFPGLVIKITPFHH 85
          ENPHINDPDDVFPGLVIKITPFHH
Sbjct: 70 ENPHINDPDDVFPGLVIKITPFHH 93

BLAST of Sed0020818 vs. NCBI nr
Match: XP_012066520.1 (uncharacterized protein LOC105629522 [Jatropha curcas])

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-20
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 0

Query: 11  ILALVLVLSCWSCHCKSQELLM----------GCDEIYVVREGETLHSISEKCGDLFIVE 70
           ++A++++LSC  C     E +M          GCDEIYVVREGETLHSISEKCGD +IVE
Sbjct: 21  LMAILMILSC--CEVSESEFVMKNQNGFVVNKGCDEIYVVREGETLHSISEKCGDPYIVE 80

Query: 71  ENPHINDPDDVFPGLVIKITPFHH 85
           ENPHI+DPDDVFPGLVIKITPF++
Sbjct: 81  ENPHIHDPDDVFPGLVIKITPFNN 102

BLAST of Sed0020818 vs. NCBI nr
Match: PIN05403.1 (hypothetical protein CDL12_22060 [Handroanthus impetiginosus])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 61/101 (60.40%), Postives = 70/101 (69.31%), Query Frame = 0

Query: 2   AKSISTMME--------ILALVLVLSCW---------SCHCKSQELLM---GCDEIYVVR 61
           AKS++ + E        +LAL+LVLSC          +   K+ E L     CDEIYVVR
Sbjct: 4   AKSLTALAEAVSWYSAMLLALMLVLSCCEPGEGGEFSAGEMKNMENLFSDRACDEIYVVR 63

Query: 62  EGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPF 83
           EGETLH+ISEKCGD FIVEENPHI+DPDDVFPGLVIKITPF
Sbjct: 64  EGETLHTISEKCGDPFIVEENPHIHDPDDVFPGLVIKITPF 104

BLAST of Sed0020818 vs. NCBI nr
Match: XP_002283136.1 (PREDICTED: uncharacterized protein LOC100244252 [Vitis vinifera] >XP_034694604.1 uncharacterized protein LOC117920978 [Vitis riparia] >RVX11881.1 hypothetical protein CK203_009562 [Vitis vinifera])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 11  ILALVLVLSCWSCHCKSQELLM---------GCDEIYVVREGETLHSISEKCGDLFIVEE 70
           +LAL+LVLSC        E+++          CDEIYVVREGETLH+ISEKCGD +IVEE
Sbjct: 21  LLALMLVLSCCESAQSHDEIMVRLHKKDAKKPCDEIYVVREGETLHTISEKCGDPYIVEE 80

Query: 71  NPHINDPDDVFPGLVIKITPFHH 85
           NPHI+DPDDVFPGLVIKITP+++
Sbjct: 81  NPHIHDPDDVFPGLVIKITPYNY 103

BLAST of Sed0020818 vs. ExPASy TrEMBL
Match: A0A438JSE7 (LysM domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_009562 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.0e-20
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 11  ILALVLVLSCWSCHCKSQELLM---------GCDEIYVVREGETLHSISEKCGDLFIVEE 70
           +LAL+LVLSC        E+++          CDEIYVVREGETLH+ISEKCGD +IVEE
Sbjct: 21  LLALMLVLSCCESAQSHDEIMVRLHKKDAKKPCDEIYVVREGETLHTISEKCGDPYIVEE 80

Query: 71  NPHINDPDDVFPGLVIKITPFHH 85
           NPHI+DPDDVFPGLVIKITP+++
Sbjct: 81  NPHIHDPDDVFPGLVIKITPYNY 103

BLAST of Sed0020818 vs. ExPASy TrEMBL
Match: A0A2G9GJE3 (LysM domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22060 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.0e-20
Identity = 61/101 (60.40%), Postives = 70/101 (69.31%), Query Frame = 0

Query: 2   AKSISTMME--------ILALVLVLSCW---------SCHCKSQELLM---GCDEIYVVR 61
           AKS++ + E        +LAL+LVLSC          +   K+ E L     CDEIYVVR
Sbjct: 4   AKSLTALAEAVSWYSAMLLALMLVLSCCEPGEGGEFSAGEMKNMENLFSDRACDEIYVVR 63

Query: 62  EGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPF 83
           EGETLH+ISEKCGD FIVEENPHI+DPDDVFPGLVIKITPF
Sbjct: 64  EGETLHTISEKCGDPFIVEENPHIHDPDDVFPGLVIKITPF 104

BLAST of Sed0020818 vs. ExPASy TrEMBL
Match: A0A438EJV6 (LysM domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_089200 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 11  ILALVLVLSCWSCHCKSQELLM---------GCDEIYVVREGETLHSISEKCGDLFIVEE 70
           +LAL+LVLSC        E+++          CDEIYVVREGETLH+ISEKCGD +IVEE
Sbjct: 21  LLALMLVLSCCESAQSHYEIMVRLHKKDAKKPCDEIYVVREGETLHTISEKCGDPYIVEE 80

Query: 71  NPHINDPDDVFPGLVIKITPFHH 85
           NPHI+DPDDVFPGLVIKITP+++
Sbjct: 81  NPHIHDPDDVFPGLVIKITPYNY 103

BLAST of Sed0020818 vs. ExPASy TrEMBL
Match: A0A7J6W511 (Peptidoglycan-binding LysM domain-containing protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_017960 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 12 LALVLVLSCWSCHCKSQELLMG------CDEIYVVREGETLHSISEKCGDLFIVEENPHI 71
          LA+VL+LSC         ++M       CDEIYVV EGETLH+ISEKCGD +IVEENPHI
Sbjct: 13 LAIVLLLSCCDSSETESSVMMNNNNRRPCDEIYVVGEGETLHTISEKCGDPYIVEENPHI 72

Query: 72 NDPDDVFPGLVIKITPF 83
          NDPDDVFPGLVIKITPF
Sbjct: 73 NDPDDVFPGLVIKITPF 89

BLAST of Sed0020818 vs. ExPASy TrEMBL
Match: A0A6N2LQ08 (LysM domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS263395 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 60/94 (63.83%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 1   MAKSISTMMEIL-ALVLVLSCWSCHCKSQELL----------MGCDEIYVVREGETLHSI 60
           MA+ IS    +L ALVLVL C  C     EL             CDEIYVVREGETLH+I
Sbjct: 53  MAEKISWCCALLMALVLVLGC--CEVSESELAAVGHPRVFEDRPCDEIYVVREGETLHTI 112

Query: 61  SEKCGDLFIVEENPHINDPDDVFPGLVIKITPFH 84
           SEKCGD +IVEENPHI+DPDDVFPGLVIKITPF+
Sbjct: 113 SEKCGDPYIVEENPHIHDPDDVFPGLVIKITPFN 144

BLAST of Sed0020818 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 90.9 bits (224), Expect = 5.8e-19
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 11 ILALVLVLSCWSCHCK-----SQELLMGCDEIYVVREGETLHSISEKCGDLFIVEENPHI 70
          +L+L+L+LS    +       SQ     C+EIY+V EGETLH+I +KCGD FIVE NPHI
Sbjct: 20 LLSLILLLSVRENNASNSIRGSQFSTKPCEEIYIVGEGETLHTIGDKCGDPFIVERNPHI 79

Query: 71 NDPDDVFPGLVIKITPFH 84
          +DPDDVFPGLV+KI PF+
Sbjct: 80 HDPDDVFPGLVLKIAPFY 97

BLAST of Sed0020818 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-17
Identity = 37/46 (80.43%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 34  CDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKI 80
           C+E+YVV EG+TLHSISEKCGD FIVE NPHI+DPDDVFPGL+IK+
Sbjct: 59  CEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

BLAST of Sed0020818 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-16
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 34  CDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITP 82
           CDEIY V+EGETL +ISEKCGD +IVE NPHI+D DD+FPGL+I+ITP
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITP 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6595189.12.3e-2572.83hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647420.12.1e-2371.43hypothetical protein Csa_003059 [Cucumis sativus][more]
XP_012066520.11.3e-2064.29uncharacterized protein LOC105629522 [Jatropha curcas][more]
PIN05403.11.9e-1960.40hypothetical protein CDL12_22060 [Handroanthus impetiginosus][more]
XP_002283136.11.9e-1963.86PREDICTED: uncharacterized protein LOC100244252 [Vitis vinifera] >XP_034694604.1... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A438JSE79.0e-2063.86LysM domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_009562 PE=4 S... [more]
A0A2G9GJE39.0e-2060.40LysM domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_... [more]
A0A438EJV61.2e-1963.86LysM domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_089200 PE=4 S... [more]
A0A7J6W5111.2e-1968.83Peptidoglycan-binding LysM domain-containing protein OS=Thalictrum thalictroides... [more]
A0A6N2LQ081.2e-1963.83LysM domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS263395 P... [more]
Match NameE-valueIdentityDescription
AT5G62150.15.8e-1957.69peptidoglycan-binding LysM domain-containing protein [more]
AT4G25433.11.9e-1780.43peptidoglycan-binding LysM domain-containing protein [more]
AT3G52790.12.1e-1675.00peptidoglycan-binding LysM domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainPFAMPF01476LysMcoord: 38..80
e-value: 2.9E-5
score: 24.0
IPR018392LysM domainCDDcd00118LysMcoord: 37..79
e-value: 1.01491E-6
score: 39.7761
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 27..84
e-value: 1.3E-8
score: 36.2
NoneNo IPR availablePANTHERPTHR33648:SF15EMBRYO SAC 1coord: 5..83
NoneNo IPR availablePANTHERPTHR33648EMBRYO SAC 1coord: 5..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0020818.1Sed0020818.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane